BacMap

Definition	Rhodopseudomonas palustris HaA2, complete genome.
Accession	NC_007778
Length	5,331,656

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The map label for this gene is rhlG [H]

Identifier: 86747896

GI number: 86747896

Start: 863164

End: 863970

Strand: Reverse

Name: rhlG [H]

Synonym: RPB_0770

Alternate gene names: 86747896

Gene position: 863970-863164 (Counterclockwise)

Preceding gene: 86747897

Following gene: 86747884

Centisome position: 16.2

GC content: 68.28

Gene sequence:

>807_bases
ATGTTCCACAATCTGTTTTCGCTGGAGGGCCGCGTCGCCCTGGTGACCGGCGGCTCGCGCGGCATCGGCAAGATGATCGC
CTCGGGCTTTCTCGCTTACGGCGCGTCACGGGTCTACATCACCGCGCGCAAGGCCGCGGCCTGCGAAGCCACCGCGGCGG
AATTGACCGCGCAGCATTCCGGCGACTGCATCGCGCTGCCGATCGACATCTCCACCATGACCGGCATCGACATGCTGGCC
GGCGAGATCAAGAAGCGCGAACCGAAGCTCGACATTCTGGTCAACAATGCCGGCGCCGCCTGGGCGGCCGACTTCGATGA
ATTCCCGGAGGCCGGCTGGGACAAGGTGATGGACCTCAACGTCAAGACGCCGTTCTTCCTCACCAAGGCGCTGCACGGCC
CGCTGCGCGCCGCCGCCACCGCCGAGCGCCCCGGCAAGGTGATCAACATCGCCTCGATCGACGGCATCTTCGTCAATCCG
CTCGAGACCTATCCGTATGCGGCCTCGAAAGCCGGACTGATCCACCTGACGCGGCGGATGGCGGTGCGGCTGATCAAGGA
CCACATCGTGGTGACGGCGATCGCGCCGGGCCCGTTCGCGTCGGACATGAACAAGGCCGCCCGCGACGAGGCCGAGGCGG
TGGCCGGCCGCGTGCCGGCCGGCCGGATCGGCACCGACGAGGACATGGCCGGCACCGCGATCTACCTGGCGTCGCGCGCC
GGCGACTACGTCGTCGGCACCACCATCGCCGTCGACGGCGGCGTCGCCTACGCCAACCCGGGCATCAAGGGCGACGGCTG
GGCTTAA

Upstream 100 bases:

>100_bases
TGAATTTCCGAGACACGGAACGCATCCGGATCGCCTCGCGGCTCGCCTTGACTCGTCCCGGGCCGCACCGCAAACCATCG
GGCAAACACAGGGAGGATGC

Downstream 100 bases:

>100_bases
GCCGGGCGGTTGCGCGCGTCGGCTCGGCGAGCGCCTGCTCGAGCAGCTCTGGTTTTGATGGAGCCACCGCCGTCATCCTG
AGGTGCCCGCCGGGCCGCGC

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MFHNLFSLEGRVALVTGGSRGIGKMIASGFLAYGASRVYITARKAAACEATAAELTAQHSGDCIALPIDISTMTGIDMLA
GEIKKREPKLDILVNNAGAAWAADFDEFPEAGWDKVMDLNVKTPFFLTKALHGPLRAAATAERPGKVINIASIDGIFVNP
LETYPYAASKAGLIHLTRRMAVRLIKDHIVVTAIAPGPFASDMNKAARDEAEAVAGRVPAGRIGTDEDMAGTAIYLASRA
GDYVVGTTIAVDGGVAYANPGIKGDGWA

Sequences:

>Translated_268_residues
MFHNLFSLEGRVALVTGGSRGIGKMIASGFLAYGASRVYITARKAAACEATAAELTAQHSGDCIALPIDISTMTGIDMLA
GEIKKREPKLDILVNNAGAAWAADFDEFPEAGWDKVMDLNVKTPFFLTKALHGPLRAAATAERPGKVINIASIDGIFVNP
LETYPYAASKAGLIHLTRRMAVRLIKDHIVVTAIAPGPFASDMNKAARDEAEAVAGRVPAGRIGTDEDMAGTAIYLASRA
GDYVVGTTIAVDGGVAYANPGIKGDGWA
>Mature_268_residues
MFHNLFSLEGRVALVTGGSRGIGKMIASGFLAYGASRVYITARKAAACEATAAELTAQHSGDCIALPIDISTMTGIDMLA
GEIKKREPKLDILVNNAGAAWAADFDEFPEAGWDKVMDLNVKTPFFLTKALHGPLRAAATAERPGKVINIASIDGIFVNP
LETYPYAASKAGLIHLTRRMAVRLIKDHIVVTAIAPGPFASDMNKAARDEAEAVAGRVPAGRIGTDEDMAGTAIYLASRA
GDYVVGTTIAVDGGVAYANPGIKGDGWA

Specific function: Required for the synthesis of the beta-hydroxy acid moiety of rhamnolipids [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI19923817, Length=260, Percent_Identity=28.4615384615385, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI15277342, Length=258, Percent_Identity=31.3953488372093, Blast_Score=88, Evalue=7e-18,
Organism=Homo sapiens, GI32483357, Length=261, Percent_Identity=28.735632183908, Blast_Score=88, Evalue=9e-18,
Organism=Homo sapiens, GI66933014, Length=194, Percent_Identity=28.8659793814433, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI10190704, Length=272, Percent_Identity=26.1029411764706, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI109715829, Length=241, Percent_Identity=29.4605809128631, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI5031737, Length=252, Percent_Identity=31.3492063492063, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI4503301, Length=258, Percent_Identity=26.7441860465116, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI7705925, Length=250, Percent_Identity=25.2, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI20149619, Length=202, Percent_Identity=29.7029702970297, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1790717, Length=262, Percent_Identity=37.0229007633588, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1789208, Length=257, Percent_Identity=39.2996108949416, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1787335, Length=251, Percent_Identity=33.8645418326693, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI87082160, Length=256, Percent_Identity=31.25, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI87082100, Length=258, Percent_Identity=31.0077519379845, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1788459, Length=251, Percent_Identity=28.2868525896414, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787905, Length=251, Percent_Identity=33.0677290836653, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI2367175, Length=246, Percent_Identity=27.6422764227642, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI2367365, Length=247, Percent_Identity=27.1255060728745, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1789378, Length=252, Percent_Identity=27.7777777777778, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1786812, Length=261, Percent_Identity=24.5210727969349, Blast_Score=64, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17555706, Length=250, Percent_Identity=34, Blast_Score=117, Evalue=6e-27,
Organism=Caenorhabditis elegans, GI17562906, Length=266, Percent_Identity=32.3308270676692, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI25147288, Length=250, Percent_Identity=34.4, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17561402, Length=262, Percent_Identity=32.0610687022901, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17562908, Length=283, Percent_Identity=31.095406360424, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17559104, Length=265, Percent_Identity=32.4528301886792, Blast_Score=96, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17538480, Length=270, Percent_Identity=29.2592592592593, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17560676, Length=253, Percent_Identity=32.0158102766798, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17562910, Length=262, Percent_Identity=31.2977099236641, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17551412, Length=265, Percent_Identity=29.811320754717, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17531453, Length=263, Percent_Identity=32.319391634981, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17536025, Length=268, Percent_Identity=30.2238805970149, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI72000259, Length=272, Percent_Identity=30.1470588235294, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17538486, Length=266, Percent_Identity=29.6992481203008, Blast_Score=87, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI17565030, Length=268, Percent_Identity=30.9701492537313, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17560150, Length=266, Percent_Identity=30.4511278195489, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17563726, Length=271, Percent_Identity=29.520295202952, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI193204405, Length=267, Percent_Identity=31.0861423220974, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17536651, Length=270, Percent_Identity=28.1481481481481, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17560332, Length=267, Percent_Identity=29.2134831460674, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17560220, Length=270, Percent_Identity=30.3703703703704, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI17561272, Length=262, Percent_Identity=29.7709923664122, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17562904, Length=273, Percent_Identity=30.03663003663, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17562990, Length=264, Percent_Identity=30.3030303030303, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI71997099, Length=234, Percent_Identity=30.7692307692308, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI71994604, Length=258, Percent_Identity=26.3565891472868, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17544670, Length=273, Percent_Identity=26.7399267399267, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17555612, Length=226, Percent_Identity=31.858407079646, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI115534694, Length=252, Percent_Identity=29.3650793650794, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI71994600, Length=259, Percent_Identity=26.2548262548263, Blast_Score=74, Evalue=6e-14,
Organism=Saccharomyces cerevisiae, GI6324126, Length=255, Percent_Identity=24.3137254901961, Blast_Score=70, Evalue=4e-13,
Organism=Drosophila melanogaster, GI21355319, Length=253, Percent_Identity=32.8063241106719, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24639444, Length=253, Percent_Identity=32.8063241106719, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24644339, Length=256, Percent_Identity=26.5625, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24647946, Length=240, Percent_Identity=27.9166666666667, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI45553409, Length=239, Percent_Identity=28.0334728033473, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24647948, Length=239, Percent_Identity=28.0334728033473, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI21357041, Length=255, Percent_Identity=25.4901960784314, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI28571526, Length=257, Percent_Identity=25.6809338521401, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI23397609, Length=264, Percent_Identity=26.8939393939394, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI24643142, Length=250, Percent_Identity=28.4, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI28573296, Length=206, Percent_Identity=30.0970873786408, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24644337, Length=268, Percent_Identity=27.2388059701493, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24656154, Length=214, Percent_Identity=28.0373831775701, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI19922628, Length=214, Percent_Identity=28.0373831775701, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.100 [H]

Molecular weight: Translated: 28075; Mature: 28075

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFHNLFSLEGRVALVTGGSRGIGKMIASGFLAYGASRVYITARKAAACEATAAELTAQHS
CCCCEEECCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCC
GDCIALPIDISTMTGIDMLAGEIKKREPKLDILVNNAGAAWAADFDEFPEAGWDKVMDLN
CCEEEEEEECHHHCCHHHHHHHHHHCCCCEEEEEECCCCEEECCHHHCCCCCCCCEEEEC
VKTPFFLTKALHGPLRAAATAERPGKVINIASIDGIFVNPLETYPYAASKAGLIHLTRRM
CCCCHHHHHHHCCCHHHHHCCCCCCCEEEEEEECCEEECCCCCCCCCCCCCCHHHHHHHH
AVRLIKDHIVVTAIAPGPFASDMNKAARDEAEAVAGRVPAGRIGTDEDMAGTAIYLASRA
HHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECC
GDYVVGTTIAVDGGVAYANPGIKGDGWA
CCEEEEEEEEEECCEEECCCCCCCCCCC
>Mature Secondary Structure
MFHNLFSLEGRVALVTGGSRGIGKMIASGFLAYGASRVYITARKAAACEATAAELTAQHS
CCCCEEECCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCC
GDCIALPIDISTMTGIDMLAGEIKKREPKLDILVNNAGAAWAADFDEFPEAGWDKVMDLN
CCEEEEEEECHHHCCHHHHHHHHHHCCCCEEEEEECCCCEEECCHHHCCCCCCCCEEEEC
VKTPFFLTKALHGPLRAAATAERPGKVINIASIDGIFVNPLETYPYAASKAGLIHLTRRM
CCCCHHHHHHHCCCHHHHHCCCCCCCEEEEEEECCEEECCCCCCCCCCCCCCHHHHHHHH
AVRLIKDHIVVTAIAPGPFASDMNKAARDEAEAVAGRVPAGRIGTDEDMAGTAIYLASRA
HHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECC
GDYVVGTTIAVDGGVAYANPGIKGDGWA
CCEEEEEEEEEECCEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9721281; 10984043 [H]