Click here to switch to the map view.

The map label for this gene is rbfA

Identifier: 86747727

GI number: 86747727

Start: 676260

End: 676667

Strand: Direct

Name: rbfA

Synonym: RPB_0601

Alternate gene names: 86747727

Gene position: 676260-676667 (Clockwise)

Preceding gene: 86747726

Following gene: 86747728

Centisome position: 12.68

GC content: 65.69

Gene sequence:

>408_bases
ATGCCGCGCAACGAGAAGAAGACCGGCCAGAGCGCCTCGCCGCGCAAGCTGCGCGTCGGCGAGCTGGTGCGCCATGCCGT
GGCGGAGATCCTCAGCCAGGGCGGGGTGCACGACCCGGTGCTGGAGACGCATCTGATCACCGTGCCCGAAGTGCGGATGT
CGCCCGACCTCAAGCTCGCCACCGTCTATGTGATGCCGCTCGGCGGCAAGGACGAGAAGCCGGTGCTGGCGGCGCTCGAA
CAGCACAAGCGCTTCCTGCGCGGCGAGGTCGCCCGCCGCGTCAACCTCAAATACGCCCCCGATCTTCGCTTCCGCATCGA
CGAACGTTTCGCCGAAGCCGAGCGGATCGAAAAGCTGCTCCGCACGCCCGCGGTGCAAAAAGATTTGAGTGGAGAAGAGG
AAACTTGA

Upstream 100 bases:

>100_bases
GGCCGGGCTTGTCCCGGCCATCCACGGCTTCCTTTTCCGTATCAAAGGCGTGGATGCCCGCGACAAGCGCGGGCATGACG
ACAGTTTTGAGAGACCATCA

Downstream 100 bases:

>100_bases
ATGAAAACGAAAATCGATGAAGCCGCATTATTCGCAATGAATGTTCATCAGCGCCACCAGCTTTGGATAAATGCTCGTAA
GATTGATAGTGAGGAGGCAA

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 134

Protein sequence:

>135_residues
MPRNEKKTGQSASPRKLRVGELVRHAVAEILSQGGVHDPVLETHLITVPEVRMSPDLKLATVYVMPLGGKDEKPVLAALE
QHKRFLRGEVARRVNLKYAPDLRFRIDERFAEAERIEKLLRTPAVQKDLSGEEET

Sequences:

>Translated_135_residues
MPRNEKKTGQSASPRKLRVGELVRHAVAEILSQGGVHDPVLETHLITVPEVRMSPDLKLATVYVMPLGGKDEKPVLAALE
QHKRFLRGEVARRVNLKYAPDLRFRIDERFAEAERIEKLLRTPAVQKDLSGEEET
>Mature_134_residues
PRNEKKTGQSASPRKLRVGELVRHAVAEILSQGGVHDPVLETHLITVPEVRMSPDLKLATVYVMPLGGKDEKPVLAALEQ
HKRFLRGEVARRVNLKYAPDLRFRIDERFAEAERIEKLLRTPAVQKDLSGEEET

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_RHOP2 (Q2J2J8)

Other databases:

- EMBL:   CP000250
- RefSeq:   YP_484223.1
- ProteinModelPortal:   Q2J2J8
- STRING:   Q2J2J8
- GeneID:   3908294
- GenomeReviews:   CP000250_GR
- KEGG:   rpb:RPB_0601
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   LRQMKYM
- ProtClustDB:   PRK00521
- BioCyc:   RPAL316058:RPB_0601-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 15271; Mature: 15140

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRNEKKTGQSASPRKLRVGELVRHAVAEILSQGGVHDPVLETHLITVPEVRMSPDLKLA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCEEE
TVYVMPLGGKDEKPVLAALEQHKRFLRGEVARRVNLKYAPDLRFRIDERFAEAERIEKLL
EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
RTPAVQKDLSGEEET
HCCCHHHHCCCCCCC
>Mature Secondary Structure 
PRNEKKTGQSASPRKLRVGELVRHAVAEILSQGGVHDPVLETHLITVPEVRMSPDLKLA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCEEE
TVYVMPLGGKDEKPVLAALEQHKRFLRGEVARRVNLKYAPDLRFRIDERFAEAERIEKLL
EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
RTPAVQKDLSGEEET
HCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA