BacMap

Definition	Rhodopseudomonas palustris HaA2, complete genome.
Accession	NC_007778
Length	5,331,656

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The map label for this gene is gra-orf6 [H]

Identifier: 86747686

GI number: 86747686

Start: 630846

End: 631628

Strand: Direct

Name: gra-orf6 [H]

Synonym: RPB_0560

Alternate gene names: 86747686

Gene position: 630846-631628 (Clockwise)

Preceding gene: 86747682

Following gene: 86747692

Centisome position: 11.83

GC content: 67.82

Gene sequence:

>783_bases
ATGGCGACGAACGGATTGAATGTGATCGTGACAGGCTCGGCCTCCGGCCTCGGCGCCGCGACGGCGAAGATTCTGGCGCG
CGACGGCGCCCGGCTCGTGATCAACTATTCGTCCAGCCAGGCCGACGCCGAGACGACCGCGGAGGAATGCCGCAAGCTCG
GCGCCGCCGAGGTCGTGGTGGTGCAGGGCGACGTGTCGAAGGACGACGACTGCAAGCGCATCGTCGACGCCGCCGCGAAG
TGGGGCGGGCTCGACGCGCTGATCAACAATGCCGGCATCACCAAGCACGTCGCGCATCATCTGCTCGATCAATTGTCGGC
GGAGGATTTCCAGCGGCTCTACGCGGTCAACACCATCGGCCCGTATCAGATGGTCCGCGCCGCGCGGTCGCTGCTGTCGG
CCGGCGCCAAGGCGGCGGGCCGGGCGTCGGCGGTGGTCAACGTGTCGTCGGTCGCCGGCATCAGCGGCGTCGGCTCGTCG
ATCGCCTATGCGGCCAGCAAGGGCGCGCTCAACACCATGACGCTGTCGCTGTCGCGCGCGCTGGCGCCTGCGATCCGCGT
CAATGCGATCTGCCCGGGCTATATCGACACGCCGTGGTTCACCAAGGGCCGCGGCGCCGAGGAGGCCAAGCAGGTCCGCG
ACATGGTGGTGGCGAAGGTGCCGCTGAAGATCGCGTCCAGCCCCGAGGACATCGCCGAGCTGGTGTGTTTTCTGGCGACG
CCGAAATCCAACAGCATGACCGGCGAGATGGTGAGGATGGACGCCGGGATGCATCTCGGCTGA

Upstream 100 bases:

>100_bases
AGTTATTCCGCGATGCGGGCTGAGGCTGCTTGCCCAACCCGTCGCAGCCGATATGGTGCTGCCCGCAACGCGGCGCGCAA
GCCGAACCCAGGGAGCGAAG

Downstream 100 bases:

>100_bases
TCGATCGGCCGTGCAAAAACAAACGGCCCGGTGATGAGCCGGGCCGTTTGCTTGTCAGCGATCGAGGAAGCGGCGATTGC
CCGGATCGGAAATCACCCGC

Product: short-chain dehydrogenase/reductase SDR

Products: 3-oxoacyl-[acyl-carrier protein]; NADPH; H+

Alternate protein names: ORF6 [H]

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MATNGLNVIVTGSASGLGAATAKILARDGARLVINYSSSQADAETTAEECRKLGAAEVVVVQGDVSKDDDCKRIVDAAAK
WGGLDALINNAGITKHVAHHLLDQLSAEDFQRLYAVNTIGPYQMVRAARSLLSAGAKAAGRASAVVNVSSVAGISGVGSS
IAYAASKGALNTMTLSLSRALAPAIRVNAICPGYIDTPWFTKGRGAEEAKQVRDMVVAKVPLKIASSPEDIAELVCFLAT
PKSNSMTGEMVRMDAGMHLG

Sequences:

>Translated_260_residues
MATNGLNVIVTGSASGLGAATAKILARDGARLVINYSSSQADAETTAEECRKLGAAEVVVVQGDVSKDDDCKRIVDAAAK
WGGLDALINNAGITKHVAHHLLDQLSAEDFQRLYAVNTIGPYQMVRAARSLLSAGAKAAGRASAVVNVSSVAGISGVGSS
IAYAASKGALNTMTLSLSRALAPAIRVNAICPGYIDTPWFTKGRGAEEAKQVRDMVVAKVPLKIASSPEDIAELVCFLAT
PKSNSMTGEMVRMDAGMHLG
>Mature_259_residues
ATNGLNVIVTGSASGLGAATAKILARDGARLVINYSSSQADAETTAEECRKLGAAEVVVVQGDVSKDDDCKRIVDAAAKW
GGLDALINNAGITKHVAHHLLDQLSAEDFQRLYAVNTIGPYQMVRAARSLLSAGAKAAGRASAVVNVSSVAGISGVGSSI
AYAASKGALNTMTLSLSRALAPAIRVNAICPGYIDTPWFTKGRGAEEAKQVRDMVVAKVPLKIASSPEDIAELVCFLATP
KSNSMTGEMVRMDAGMHLG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI4758504, Length=266, Percent_Identity=31.203007518797, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI83715985, Length=265, Percent_Identity=29.4339622641509, Blast_Score=88, Evalue=8e-18,
Organism=Homo sapiens, GI59889578, Length=206, Percent_Identity=31.0679611650485, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI15277342, Length=264, Percent_Identity=28.4090909090909, Blast_Score=85, Evalue=5e-17,
Organism=Homo sapiens, GI5031737, Length=247, Percent_Identity=31.5789473684211, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI7705925, Length=254, Percent_Identity=28.740157480315, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI32483357, Length=256, Percent_Identity=30.46875, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI40254992, Length=261, Percent_Identity=27.9693486590038, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI31542939, Length=230, Percent_Identity=25.2173913043478, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI19923817, Length=259, Percent_Identity=25.4826254826255, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI33667109, Length=197, Percent_Identity=34.010152284264, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI66933014, Length=264, Percent_Identity=29.1666666666667, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI2367175, Length=251, Percent_Identity=31.8725099601594, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI2367365, Length=257, Percent_Identity=33.852140077821, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1789378, Length=261, Percent_Identity=30.2681992337165, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1786812, Length=268, Percent_Identity=30.2238805970149, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1787335, Length=253, Percent_Identity=29.6442687747036, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87082100, Length=262, Percent_Identity=30.9160305343511, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1790717, Length=256, Percent_Identity=28.125, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI87082160, Length=258, Percent_Identity=29.8449612403101, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1788459, Length=260, Percent_Identity=28.4615384615385, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1787891, Length=260, Percent_Identity=28.0769230769231, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1789208, Length=251, Percent_Identity=27.4900398406374, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1788891, Length=218, Percent_Identity=28.8990825688073, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787545, Length=262, Percent_Identity=23.6641221374046, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17538182, Length=266, Percent_Identity=28.9473684210526, Blast_Score=100, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI17560332, Length=266, Percent_Identity=31.5789473684211, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI72000259, Length=266, Percent_Identity=33.4586466165414, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17563726, Length=264, Percent_Identity=31.0606060606061, Blast_Score=94, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17544670, Length=271, Percent_Identity=30.6273062730627, Blast_Score=94, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI71994600, Length=260, Percent_Identity=31.9230769230769, Blast_Score=94, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI17561402, Length=258, Percent_Identity=31.3953488372093, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI71994604, Length=259, Percent_Identity=32.8185328185328, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17555706, Length=253, Percent_Identity=33.201581027668, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17562910, Length=262, Percent_Identity=29.7709923664122, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17562904, Length=265, Percent_Identity=32.0754716981132, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI115534694, Length=254, Percent_Identity=28.3464566929134, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17538486, Length=263, Percent_Identity=29.6577946768061, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17531453, Length=263, Percent_Identity=30.4182509505703, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17560676, Length=252, Percent_Identity=28.968253968254, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17551412, Length=268, Percent_Identity=28.3582089552239, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI25147288, Length=255, Percent_Identity=29.4117647058824, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17562990, Length=268, Percent_Identity=31.3432835820896, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17559104, Length=267, Percent_Identity=31.0861423220974, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17560150, Length=267, Percent_Identity=29.2134831460674, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17562906, Length=264, Percent_Identity=31.0606060606061, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17562908, Length=264, Percent_Identity=29.5454545454545, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI32563809, Length=198, Percent_Identity=29.2929292929293, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17507613, Length=198, Percent_Identity=29.2929292929293, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI193204405, Length=264, Percent_Identity=28.4090909090909, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17538480, Length=264, Percent_Identity=28.030303030303, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17560220, Length=270, Percent_Identity=28.8888888888889, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17508651, Length=254, Percent_Identity=27.9527559055118, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17565030, Length=263, Percent_Identity=28.1368821292776, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI193203117, Length=255, Percent_Identity=29.4117647058824, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI193203115, Length=251, Percent_Identity=29.8804780876494, Blast_Score=65, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=250, Percent_Identity=26.8, Blast_Score=73, Evalue=4e-14,
Organism=Saccharomyces cerevisiae, GI6322861, Length=262, Percent_Identity=27.4809160305344, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI17737361, Length=265, Percent_Identity=33.2075471698113, Blast_Score=111, Evalue=6e-25,
Organism=Drosophila melanogaster, GI23397609, Length=253, Percent_Identity=35.1778656126482, Blast_Score=108, Evalue=4e-24,
Organism=Drosophila melanogaster, GI28571526, Length=256, Percent_Identity=33.59375, Blast_Score=105, Evalue=4e-23,
Organism=Drosophila melanogaster, GI24639444, Length=255, Percent_Identity=32.5490196078431, Blast_Score=105, Evalue=4e-23,
Organism=Drosophila melanogaster, GI21357041, Length=255, Percent_Identity=33.3333333333333, Blast_Score=102, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24644339, Length=256, Percent_Identity=30.859375, Blast_Score=99, Evalue=2e-21,
Organism=Drosophila melanogaster, GI21355319, Length=251, Percent_Identity=31.0756972111554, Blast_Score=94, Evalue=8e-20,
Organism=Drosophila melanogaster, GI24643142, Length=250, Percent_Identity=26.8, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI281364892, Length=196, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24580925, Length=210, Percent_Identity=29.0476190476191, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.1.1.100

Molecular weight: Translated: 26857; Mature: 26726

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATNGLNVIVTGSASGLGAATAKILARDGARLVINYSSSQADAETTAEECRKLGAAEVVV
CCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEE
VQGDVSKDDDCKRIVDAAAKWGGLDALINNAGITKHVAHHLLDQLSAEDFQRLYAVNTIG
EECCCCCCHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHCCCC
PYQMVRAARSLLSAGAKAAGRASAVVNVSSVAGISGVGSSIAYAASKGALNTMTLSLSRA
HHHHHHHHHHHHHHCCCCCCCHHHEEEHHHHCCCCCCCCHHHHHHCCCCHHHHHHHHHHH
LAPAIRVNAICPGYIDTPWFTKGRGAEEAKQVRDMVVAKVPLKIASSPEDIAELVCFLAT
HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHCC
PKSNSMTGEMVRMDAGMHLG
CCCCCCCCHHEEECCCCCCC
>Mature Secondary Structure 
ATNGLNVIVTGSASGLGAATAKILARDGARLVINYSSSQADAETTAEECRKLGAAEVVV
CCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEE
VQGDVSKDDDCKRIVDAAAKWGGLDALINNAGITKHVAHHLLDQLSAEDFQRLYAVNTIG
EECCCCCCHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHCCCC
PYQMVRAARSLLSAGAKAAGRASAVVNVSSVAGISGVGSSIAYAASKGALNTMTLSLSRA
HHHHHHHHHHHHHHCCCCCCCHHHEEEHHHHCCCCCCCCHHHHHHCCCCHHHHHHHHHHH
LAPAIRVNAICPGYIDTPWFTKGRGAEEAKQVRDMVVAKVPLKIASSPEDIAELVCFLAT
HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHCC
PKSNSMTGEMVRMDAGMHLG
CCCCCCCCHHEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: (3R)-3-hydroxyacyl-[acyl-carrier protein]; NADP+

Specific reaction: (3R)-3-hydroxyacyl-[acyl-carrier protein] + NADP+ = 3-oxoacyl-[acyl-carrier protein] + NADPH + H+

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2583128; 9831526 [H]