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The map label for this gene is yohK [H]

Identifier: 86747618

GI number: 86747618

Start: 551346

End: 552071

Strand: Reverse

Name: yohK [H]

Synonym: RPB_0492

Alternate gene names: 86747618

Gene position: 552071-551346 (Counterclockwise)

Preceding gene: 86747619

Following gene: 86747617

Centisome position: 10.35

GC content: 69.42

Gene sequence:

>726_bases
ATGAGCGCCGCCGACCCGTTCGCGCTGTGGGTCTATCTCTCGCAGACGCCGCTGCTGTGGCTGACGGTGACGCTGCTGGT
CTACGCCGCCACCGACGCCATGTCGCAGGCCACCGGGCGCAATCCGCTGATGAACCCGGTGCTGCACGCGATGTGGATCA
TCGGCGCCTTCCTGTGGCTGACCGGCACCTCCTACACGACCTATTTCAGCGGCGCGCAGTTCGTACATTTTCTGCTCGGC
CCGGCGACCGTGGCGCTGGCGGTGCCGCTCTACGAGAACCGCCATCGTGTCGTCGCCGCGATCCTGCCGATGGCGATCGC
GCTGGTGGTCGGCTGCGTCGCCGCAATCGTCTCGGTGGTGGTGCTGGCGCAGCTCGCGGGTCTGCCCGAGCCGGTGGTGC
TGTCGCTGGCGCCGAAATCGGTCACCGCCGGCGTCGCGATGGGTATCAGCGAATCGCTGCGCGCCGATCCGTCGCTGACC
GCCGTCGCCGTGATCCTCACCGGCATCATGGGGGCGATCGTGGTGACGCCGCTGATGAACGCGCTCGGCATCCGCGACTT
CCGCGCCCGCGGCTTCGCGGTCGGGCTGGCATCGCACGGCATCGGCACCGCCCGCGCCTTCCAGGTCGACGCCATCGCCG
GCGTGTTCGCCGGCATCGCCATGAGCCTGAACGCGCTGATCACCGCCCTGCTGGTGCCGGTGCTGGTCACGCTGCTGGTG
AGGTAG

Upstream 100 bases:

>100_bases
CGATCGCGCTGGTGCTCGCCGGTTCGGTGCTGATCACGCTGCTGGTGACGGTCGCGACCTTCCTGGTCACGGCGCGTCTG
CTGTCGATGTGGGGCGCGCG

Downstream 100 bases:

>100_bases
GTCGTCCGCCGCCTGGCGCCCGCGCCTTGTGACAAAGCGGTCGCCCCGACTCTCGGCCGTCACCCTCCGCGCAGGCGGAG
GGCCCCGTATTGCAGAGCGC

Product: LrgB-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MSAADPFALWVYLSQTPLLWLTVTLLVYAATDAMSQATGRNPLMNPVLHAMWIIGAFLWLTGTSYTTYFSGAQFVHFLLG
PATVALAVPLYENRHRVVAAILPMAIALVVGCVAAIVSVVVLAQLAGLPEPVVLSLAPKSVTAGVAMGISESLRADPSLT
AVAVILTGIMGAIVVTPLMNALGIRDFRARGFAVGLASHGIGTARAFQVDAIAGVFAGIAMSLNALITALLVPVLVTLLV
R

Sequences:

>Translated_241_residues
MSAADPFALWVYLSQTPLLWLTVTLLVYAATDAMSQATGRNPLMNPVLHAMWIIGAFLWLTGTSYTTYFSGAQFVHFLLG
PATVALAVPLYENRHRVVAAILPMAIALVVGCVAAIVSVVVLAQLAGLPEPVVLSLAPKSVTAGVAMGISESLRADPSLT
AVAVILTGIMGAIVVTPLMNALGIRDFRARGFAVGLASHGIGTARAFQVDAIAGVFAGIAMSLNALITALLVPVLVTLLV
R
>Mature_240_residues
SAADPFALWVYLSQTPLLWLTVTLLVYAATDAMSQATGRNPLMNPVLHAMWIIGAFLWLTGTSYTTYFSGAQFVHFLLGP
ATVALAVPLYENRHRVVAAILPMAIALVVGCVAAIVSVVVLAQLAGLPEPVVLSLAPKSVTAGVAMGISESLRADPSLTA
VAVILTGIMGAIVVTPLMNALGIRDFRARGFAVGLASHGIGTARAFQVDAIAGVFAGIAMSLNALITALLVPVLVTLLVR

Specific function: Unknown

COG id: COG1346

COG function: function code M; Putative effector of murein hydrolase

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yohK (E.coli)/ywbG (IPA-22R) (B.subtilis) family [H]

Homologues:

Organism=Escherichia coli, GI1788464, Length=215, Percent_Identity=41.8604651162791, Blast_Score=148, Evalue=3e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005261
- InterPro:   IPR007300 [H]

Pfam domain/function: PF04172 LrgB [H]

EC number: NA

Molecular weight: Translated: 25045; Mature: 24914

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAADPFALWVYLSQTPLLWLTVTLLVYAATDAMSQATGRNPLMNPVLHAMWIIGAFLWL
CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
TGTSYTTYFSGAQFVHFLLGPATVALAVPLYENRHRVVAAILPMAIALVVGCVAAIVSVV
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VLAQLAGLPEPVVLSLAPKSVTAGVAMGISESLRADPSLTAVAVILTGIMGAIVVTPLMN
HHHHHHCCCCCEEEEECCCHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
ALGIRDFRARGFAVGLASHGIGTARAFQVDAIAGVFAGIAMSLNALITALLVPVLVTLLV
HHCCHHHHHCHHEEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
R
C
>Mature Secondary Structure 
SAADPFALWVYLSQTPLLWLTVTLLVYAATDAMSQATGRNPLMNPVLHAMWIIGAFLWL
CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
TGTSYTTYFSGAQFVHFLLGPATVALAVPLYENRHRVVAAILPMAIALVVGCVAAIVSVV
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VLAQLAGLPEPVVLSLAPKSVTAGVAMGISESLRADPSLTAVAVILTGIMGAIVVTPLMN
HHHHHHCCCCCEEEEECCCHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
ALGIRDFRARGFAVGLASHGIGTARAFQVDAIAGVFAGIAMSLNALITALLVPVLVTLLV
HHCCHHHHHCHHEEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
R
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 2575702 [H]