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The map label for this gene is ydiK [C]

Identifier: 86747614

GI number: 86747614

Start: 546115

End: 547230

Strand: Reverse

Name: ydiK [C]

Synonym: RPB_0488

Alternate gene names: 86747614

Gene position: 547230-546115 (Counterclockwise)

Preceding gene: 86747617

Following gene: 86747610

Centisome position: 10.26

GC content: 66.4

Gene sequence:

>1116_bases
ATGCGCGCGGGTGACAACAAGTTCTTCATCTTTCTGCTGGCGGCCGCTTCGGTCGCATTCGTCTGGATCCTGCTGCCGTT
CTACGGCGCGTTGCTGTGGGGCGTAGTGATCGCGATCCTGTTCGCGCCGCTGTATCGACAGCTCAACCGCGCCTTCGGCT
TCCGCCGCAACCTCGCCGCGGTGGTCGGGGTGACGGTCATCGTGCTGCTGGTTCTGCTGCCGTTCTCGGCGATCGGCACT
GCGCTGGCGAAGGAGGCCACCGGCCTCTACGCCAGGATCGAATCCGGCAATCTGGCTTTGCTCAACAACCTGCGGAACTT
CATCGAGCAGCCCCCGAGCTGGATCAACGATCTGCTCGAGCGGTTCGGCATCGGCAGCGTCGCCGAACTGCAGCAGCGGC
TGAGTTCGGTGCTGATGCGCGGCAGCCAGTATTTGGCCGGCCAGGCGCTGACGATCGGCCAGAGCACCGTCGATTTCACC
GTCAACCTGTTCGTGATGTTGTATCTGCTGTTCTTCCTGCTGCGCGACGGCGACCTGATCGCCGGCCGGCTCCGCCGCGG
GCTGCCGCTGTCGGTCGATCAGCAGAACCTGCTGCTGAACAAATTCACCGTGGTGATCCGCGCCACGGTGAAGGGCAACA
TGCTGATCGCGCTGATCCAGGGCGCGCTCGGCGGGCTGGCGTTCTATGTTCTGGGCATCGGCGGCGCGCTGCTGTGGGCG
GTGGTGATGGCGTTCGTGTCGCTGCTCCCGGCGGTCGGCGCCGGCCTGGTGTGGGCGCCGGTGGCGGTTTATCTGATCGC
GACCGGGTCGATGTGGCAGGGCATCCTGCTGATCGCCTATGGGGCGCTGGTGATCGGCATGGTCGACAACGTGCTGCGCC
CGGTGCTGGTCGGCAAGGACACAAGGATGCCGGACTACGTGGTGCTGATCTCGACGCTCGGCGGCCTGCAGGTGTTCGGC
CTCAACGGCTTCGTCATCGGCCCGGTGATCGCGGCGATGTTCATCGCGGTGTGGGACATCTACTCCGCATCGCGCGAGGA
CGCCGCCAACGCCGGCGAGGCGACCACCGGCGGCGTGCCGAGCAGCGGCGAGGTGCGGAGCGCCGACGCGCCCTAG

Upstream 100 bases:

>100_bases
GGTCGGTACGACACACGCCGCGTTTGCGGGACTGCGGTCGGCGCGGGAGCCATCGGCCGCCCCGATCGTTTGCTTCCGCG
ACGGCAATGGGGATTTCTGA

Downstream 100 bases:

>100_bases
AGCGCTTCATCGCTTGATTGAAGCAACGCGGCATTTGCGCGTGCGGAGTCGTCATCCTGAGAGCCTGCCCCGGACTTGAT
CCGGGGTGCGAGCGCAGCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MRAGDNKFFIFLLAAASVAFVWILLPFYGALLWGVVIAILFAPLYRQLNRAFGFRRNLAAVVGVTVIVLLVLLPFSAIGT
ALAKEATGLYARIESGNLALLNNLRNFIEQPPSWINDLLERFGIGSVAELQQRLSSVLMRGSQYLAGQALTIGQSTVDFT
VNLFVMLYLLFFLLRDGDLIAGRLRRGLPLSVDQQNLLLNKFTVVIRATVKGNMLIALIQGALGGLAFYVLGIGGALLWA
VVMAFVSLLPAVGAGLVWAPVAVYLIATGSMWQGILLIAYGALVIGMVDNVLRPVLVGKDTRMPDYVVLISTLGGLQVFG
LNGFVIGPVIAAMFIAVWDIYSASREDAANAGEATTGGVPSSGEVRSADAP

Sequences:

>Translated_371_residues
MRAGDNKFFIFLLAAASVAFVWILLPFYGALLWGVVIAILFAPLYRQLNRAFGFRRNLAAVVGVTVIVLLVLLPFSAIGT
ALAKEATGLYARIESGNLALLNNLRNFIEQPPSWINDLLERFGIGSVAELQQRLSSVLMRGSQYLAGQALTIGQSTVDFT
VNLFVMLYLLFFLLRDGDLIAGRLRRGLPLSVDQQNLLLNKFTVVIRATVKGNMLIALIQGALGGLAFYVLGIGGALLWA
VVMAFVSLLPAVGAGLVWAPVAVYLIATGSMWQGILLIAYGALVIGMVDNVLRPVLVGKDTRMPDYVVLISTLGGLQVFG
LNGFVIGPVIAAMFIAVWDIYSASREDAANAGEATTGGVPSSGEVRSADAP
>Mature_371_residues
MRAGDNKFFIFLLAAASVAFVWILLPFYGALLWGVVIAILFAPLYRQLNRAFGFRRNLAAVVGVTVIVLLVLLPFSAIGT
ALAKEATGLYARIESGNLALLNNLRNFIEQPPSWINDLLERFGIGSVAELQQRLSSVLMRGSQYLAGQALTIGQSTVDFT
VNLFVMLYLLFFLLRDGDLIAGRLRRGLPLSVDQQNLLLNKFTVVIRATVKGNMLIALIQGALGGLAFYVLGIGGALLWA
VVMAFVSLLPAVGAGLVWAPVAVYLIATGSMWQGILLIAYGALVIGMVDNVLRPVLVGKDTRMPDYVVLISTLGGLQVFG
LNGFVIGPVIAAMFIAVWDIYSASREDAANAGEATTGGVPSSGEVRSADAP

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1787979, Length=348, Percent_Identity=28.735632183908, Blast_Score=95, Evalue=8e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 39649; Mature: 39649

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAGDNKFFIFLLAAASVAFVWILLPFYGALLWGVVIAILFAPLYRQLNRAFGFRRNLAA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVGVTVIVLLVLLPFSAIGTALAKEATGLYARIESGNLALLNNLRNFIEQPPSWINDLLE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCHHHHHHHHH
RFGIGSVAELQQRLSSVLMRGSQYLAGQALTIGQSTVDFTVNLFVMLYLLFFLLRDGDLI
HCCCCCHHHHHHHHHHHHHCCCHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHH
AGRLRRGLPLSVDQQNLLLNKFTVVIRATVKGNMLIALIQGALGGLAFYVLGIGGALLWA
HHHHHCCCCCCCCHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VVMAFVSLLPAVGAGLVWAPVAVYLIATGSMWQGILLIAYGALVIGMVDNVLRPVLVGKD
HHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
TRMPDYVVLISTLGGLQVFGLNGFVIGPVIAAMFIAVWDIYSASREDAANAGEATTGGVP
CCCCHHHHHEEHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCC
SSGEVRSADAP
CCCCCCCCCCC
>Mature Secondary Structure
MRAGDNKFFIFLLAAASVAFVWILLPFYGALLWGVVIAILFAPLYRQLNRAFGFRRNLAA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVGVTVIVLLVLLPFSAIGTALAKEATGLYARIESGNLALLNNLRNFIEQPPSWINDLLE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCHHHHHHHHH
RFGIGSVAELQQRLSSVLMRGSQYLAGQALTIGQSTVDFTVNLFVMLYLLFFLLRDGDLI
HCCCCCHHHHHHHHHHHHHCCCHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHH
AGRLRRGLPLSVDQQNLLLNKFTVVIRATVKGNMLIALIQGALGGLAFYVLGIGGALLWA
HHHHHCCCCCCCCHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VVMAFVSLLPAVGAGLVWAPVAVYLIATGSMWQGILLIAYGALVIGMVDNVLRPVLVGKD
HHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
TRMPDYVVLISTLGGLQVFGLNGFVIGPVIAAMFIAVWDIYSASREDAANAGEATTGGVP
CCCCHHHHHEEHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCC
SSGEVRSADAP
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]