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The map label for this gene is yraN [C]

Identifier: 86747546

GI number: 86747546

Start: 463349

End: 463735

Strand: Reverse

Name: yraN [C]

Synonym: RPB_0420

Alternate gene names: 86747546

Gene position: 463735-463349 (Counterclockwise)

Preceding gene: 86747547

Following gene: 86747545

Centisome position: 8.7

GC content: 68.73

Gene sequence:

>387_bases
ATGGCGAAGACTAAGCATCCACCGGCGCCTGACCGCGTCGCCGCGTTTCAGACCGGGATCTCCGCCGAAACCCGCGCCGC
AGCCTATCTGATGGCGAAGGGCTACCGGATCCTGGCGCGACGGTTCAAGACGCCCTGTGGCGAGATCGACATCGTGGCGC
AGCGGCGCCAGCTGATCGCCTTCGTCGAGGTCAAGGCGCGCGCCCGGCTCGACGACGCCGCCTATGCGGTGACGCCCCGA
CAGCAGCAACGCATCATCGCCGCCGCCGAGGCGTGGCTGATGGCCAATCCCGACCACGCCACGTTCGAGCTGCGCTTCGA
CGCGGTGCTGGTGGCGCCGAAGCGATTGCCGCAGCATTTGCCGGCGGCGTTCGACGCGAGCCCTTGA

Upstream 100 bases:

>100_bases
GCGCAAGCCGTCGAAATCTCCGGGCGTCCTCGTCGCGAGATCTACGCCCGCGCGCTCGAACTGGCGCGACAGCGCGAGGC
CGGCAATGACGAAAGTTGCG

Downstream 100 bases:

>100_bases
CCCGCCGGTCCTGATCGCCGGTCCTTGACCGCGGCATCCGATCGGCCGATAGCCCTTTCCGCCCGCAACCCTGGAAGCTC
TGCATGACATTGAAGGTCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 127

Protein sequence:

>128_residues
MAKTKHPPAPDRVAAFQTGISAETRAAAYLMAKGYRILARRFKTPCGEIDIVAQRRQLIAFVEVKARARLDDAAYAVTPR
QQQRIIAAAEAWLMANPDHATFELRFDAVLVAPKRLPQHLPAAFDASP

Sequences:

>Translated_128_residues
MAKTKHPPAPDRVAAFQTGISAETRAAAYLMAKGYRILARRFKTPCGEIDIVAQRRQLIAFVEVKARARLDDAAYAVTPR
QQQRIIAAAEAWLMANPDHATFELRFDAVLVAPKRLPQHLPAAFDASP
>Mature_127_residues
AKTKHPPAPDRVAAFQTGISAETRAAAYLMAKGYRILARRFKTPCGEIDIVAQRRQLIAFVEVKARARLDDAAYAVTPRQ
QQRIIAAAEAWLMANPDHATFELRFDAVLVAPKRLPQHLPAAFDASP

Specific function: Unknown

COG id: COG0792

COG function: function code L; Predicted endonuclease distantly related to archaeal Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0102 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y420_RHOP2 (Q2J329)

Other databases:

- EMBL:   CP000250
- RefSeq:   YP_484042.1
- ProteinModelPortal:   Q2J329
- STRING:   Q2J329
- GeneID:   3909976
- GenomeReviews:   CP000250_GR
- KEGG:   rpb:RPB_0420
- eggNOG:   COG0792
- HOGENOM:   HBG710155
- OMA:   QRYDIVA
- ProtClustDB:   PRK12497
- BioCyc:   RPAL316058:RPB_0420-MONOMER
- HAMAP:   MF_00048
- InterPro:   IPR011856
- InterPro:   IPR011335
- InterPro:   IPR003509
- Gene3D:   G3DSA:3.40.1350.10
- TIGRFAMs:   TIGR00252

Pfam domain/function: PF02021 UPF0102; SSF52980 Restrict_endonuc_II-like_core

EC number: NA

Molecular weight: Translated: 14165; Mature: 14033

Theoretical pI: Translated: 10.65; Mature: 10.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKTKHPPAPDRVAAFQTGISAETRAAAYLMAKGYRILARRFKTPCGEIDIVAQRRQLIA
CCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHH
FVEVKARARLDDAAYAVTPRQQQRIIAAAEAWLMANPDHATFELRFDAVLVAPKRLPQHL
HHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHEEECCCCCEEEEEEEEEEECCHHHHHHC
PAAFDASP
CCCCCCCC
>Mature Secondary Structure 
AKTKHPPAPDRVAAFQTGISAETRAAAYLMAKGYRILARRFKTPCGEIDIVAQRRQLIA
CCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHH
FVEVKARARLDDAAYAVTPRQQQRIIAAAEAWLMANPDHATFELRFDAVLVAPKRLPQHL
HHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHEEECCCCCEEEEEEEEEEECCHHHHHHC
PAAFDASP
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA