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The map label for this gene is rhiR [H]

Identifier: 86747544

GI number: 86747544

Start: 461487

End: 462215

Strand: Reverse

Name: rhiR [H]

Synonym: RPB_0418

Alternate gene names: 86747544

Gene position: 462215-461487 (Counterclockwise)

Preceding gene: 86747545

Following gene: 86747543

Centisome position: 8.67

GC content: 66.67

Gene sequence:

>729_bases
ATGTTGGCGGGCGAAAGTCATCTTTGGGGACGGCGCGCACTGGAATTCGTCGACGCCGCGGACCGGCTCGACGCTCCATC
CCTCGTTCGACAGTTCGAATCCCACATCGCCAGCGCCGGCTTCAGCGCCTACATCATGGCCGCACTGCCCGCGCCCGGCG
CCGGGCTTGCCGAACTGACCCTGGCGAACGGCTGGCCGCGCGGCTGGTTCGAACTCTATGTCGGCCGGAACTACATGGCG
GTCGATCCGGTGCCCCGCCACGGCGCCGCCACGGTGCAGCCGTTCGAATGGTCGGACGCACCCTACGATCGCAAGCGAGA
TCGGGCCGCGCACCAGGTCATGACCGACGCGGCGGAGTTCGGTCTGGTCCGCGGCTACTGCATTCCGCTGCATTACGACG
ACGGCGGCGCCATGATCAGCATGGCCGGCGAGGCGCCCGACCTCGATCCGACCGCCAAAGGCGCGATGCAGCTGATCGGC
GTCTATGCCCATAACCGGCTTCGGTCGCTCAACCGGCCGAAGCCACAGCGCCGGCTGCTGACCTCTCGCGAATGCGAGAT
CCTGTCGTGGGCGGCGCAGGGCAAGACGGCATGGGAGATCTCTATGATTCTCCGCATCGCCGAGCGCACCGTGAAGTTCC
ACCTGATCGAAGCGTCCCGCAAACTCAATGCCGTGAACCGGACGGCCGCCGTCGCCAAGGCACTGTCACTCGGACTGATC
CGGCTGTGA

Upstream 100 bases:

>100_bases
TTTCGCCGCGGCCCTGTTTGACGTTAGTATCGATTGTCCCCTCTTGCTAGTTCGGTGACGCCGCTCCAGAAGTAGTGGGG
TGCGGGCGGAGCGTCGGGCG

Downstream 100 bases:

>100_bases
CCTGTCCGATCGGACAGTAGGCCGCAACCGACCACCACGTCACTCTCATCCCCGGGACTACCGGGGAGAGGACAATGGAC
GTTCACGTCGTGCGCCGCGA

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MLAGESHLWGRRALEFVDAADRLDAPSLVRQFESHIASAGFSAYIMAALPAPGAGLAELTLANGWPRGWFELYVGRNYMA
VDPVPRHGAATVQPFEWSDAPYDRKRDRAAHQVMTDAAEFGLVRGYCIPLHYDDGGAMISMAGEAPDLDPTAKGAMQLIG
VYAHNRLRSLNRPKPQRRLLTSRECEILSWAAQGKTAWEISMILRIAERTVKFHLIEASRKLNAVNRTAAVAKALSLGLI
RL

Sequences:

>Translated_242_residues
MLAGESHLWGRRALEFVDAADRLDAPSLVRQFESHIASAGFSAYIMAALPAPGAGLAELTLANGWPRGWFELYVGRNYMA
VDPVPRHGAATVQPFEWSDAPYDRKRDRAAHQVMTDAAEFGLVRGYCIPLHYDDGGAMISMAGEAPDLDPTAKGAMQLIG
VYAHNRLRSLNRPKPQRRLLTSRECEILSWAAQGKTAWEISMILRIAERTVKFHLIEASRKLNAVNRTAAVAKALSLGLI
RL
>Mature_242_residues
MLAGESHLWGRRALEFVDAADRLDAPSLVRQFESHIASAGFSAYIMAALPAPGAGLAELTLANGWPRGWFELYVGRNYMA
VDPVPRHGAATVQPFEWSDAPYDRKRDRAAHQVMTDAAEFGLVRGYCIPLHYDDGGAMISMAGEAPDLDPTAKGAMQLIG
VYAHNRLRSLNRPKPQRRLLTSRECEILSWAAQGKTAWEISMILRIAERTVKFHLIEASRKLNAVNRTAAVAKALSLGLI
RL

Specific function: Positive regulator of the rhiABC operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788224, Length=191, Percent_Identity=30.8900523560209, Blast_Score=75, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 26678; Mature: 26678

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAGESHLWGRRALEFVDAADRLDAPSLVRQFESHIASAGFSAYIMAALPAPGAGLAELT
CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHEEEEEECCCCCCCCEEEE
LANGWPRGWFELYVGRNYMAVDPVPRHGAATVQPFEWSDAPYDRKRDRAAHQVMTDAAEF
ECCCCCCCCEEEEECCCEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
GLVRGYCIPLHYDDGGAMISMAGEAPDLDPTAKGAMQLIGVYAHNRLRSLNRPKPQRRLL
CCEEEEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
TSRECEILSWAAQGKTAWEISMILRIAERTVKFHLIEASRKLNAVNRTAAVAKALSLGLI
CCCCCCEEEHHCCCCCHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHH
RL
CC
>Mature Secondary Structure
MLAGESHLWGRRALEFVDAADRLDAPSLVRQFESHIASAGFSAYIMAALPAPGAGLAELT
CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHEEEEEECCCCCCCCEEEE
LANGWPRGWFELYVGRNYMAVDPVPRHGAATVQPFEWSDAPYDRKRDRAAHQVMTDAAEF
ECCCCCCCCEEEEECCCEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
GLVRGYCIPLHYDDGGAMISMAGEAPDLDPTAKGAMQLIGVYAHNRLRSLNRPKPQRRLL
CCEEEEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
TSRECEILSWAAQGKTAWEISMILRIAERTVKFHLIEASRKLNAVNRTAAVAKALSLGLI
CCCCCCEEEHHCCCCCHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHH
RL
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1597418 [H]