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The map label for this gene is ybbN [H]

Identifier: 86747422

GI number: 86747422

Start: 334683

End: 335603

Strand: Reverse

Name: ybbN [H]

Synonym: RPB_0296

Alternate gene names: 86747422

Gene position: 335603-334683 (Counterclockwise)

Preceding gene: 86747423

Following gene: 86747421

Centisome position: 6.29

GC content: 69.27

Gene sequence:

>921_bases
GTGACAATCATCGAGCAGGGCAGCGGTGCGGCCCCCCAGGCGGCGCCCGATCTGATCAAGGACACCACGACGCAGACCTT
CGTCCGCGACGTCATCGAAGAGTCCAAGCTCCAGCCGGTGCTGATCGACTTCTGGGCGCCCTGGTGCGGTCCCTGCCGCC
AGCTCACCCCAATGCTGGAAAAGGCGGTCCGCGCTGCCGGCGGCAAGGTCAAGCTGGTCAAGATGAACATCGACGAGCAT
CCGTCGATCCCGGGCCAGATGGGCATCCAGTCGATCCCCGCGGTGATCGCCTTCGTCGACGGTCGCCCGGCCGACGGCTT
CATGGGCGCGGTGCCGGAGAGCCAGGTCGCTGCCTTCATCGAGAAACTGACCGCCGGCGTTCCCGGCGGCGCGCCGACGG
CCGCGGAACTGCTGCAGGAAGCCGAGGCGGTGATGGCCGAGGGCGATCTGCAGACCGCCGGCGCGATCTATGCCGAGGTG
CTGCGCGCCGACGCCGCCAATGTCGAGGCGATCGTCGGGCTGGCGCGCTGCTACATGGTGTCCGGCGCGGTCGACGAGGC
CAAGGCGACGCTGGCCCAGGTGCCCGAAGCCAGACGCGAGGACGCCGCCGTCAAGGCGGTGCAGGCGATGATCGATCTCG
CCGCGCAGGCCGAGCAGGTCGGCCCGATCGCCGAGCTGGAGCAGAAGGTCGCCGCCGATCCGCTCGACCATCAGGCGCGG
TTCGATCTCGCCACCGCGCTCAATGCGGCCGGCCGGCGCGACGAGGCCACCACGCATCTGCTGGAGATCGTCCGGCGCGA
CCGCAAGTGGAACGAGGACGGCGCCCGCAAGCAGCTGGTGCAATTGTTCGAGGCCTGGGGCCCGACCGACGACGCCACCA
TCGAGGGGCGCAAGCGGCTCTCGACCATTCTGTTCTCTTAA

Upstream 100 bases:

>100_bases
AACCGATCATGCTCGAATACGAATCTGGAGCAGGATGACGATTCGAACAGACGTCATCCTGATCTAAACTGCGCACTTCC
GGACATCAGGCGAGGATCAC

Downstream 100 bases:

>100_bases
TTCGCTCTCGAACCGCGGGATTCGCCGATGCCGATCAATGCCGATTATCGCGGCCCCGCCGATCTTCCCGAGGTAATCCC
GGTGTTTCCGCTGCCGGGCG

Product: thioredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 305

Protein sequence:

>306_residues
MTIIEQGSGAAPQAAPDLIKDTTTQTFVRDVIEESKLQPVLIDFWAPWCGPCRQLTPMLEKAVRAAGGKVKLVKMNIDEH
PSIPGQMGIQSIPAVIAFVDGRPADGFMGAVPESQVAAFIEKLTAGVPGGAPTAAELLQEAEAVMAEGDLQTAGAIYAEV
LRADAANVEAIVGLARCYMVSGAVDEAKATLAQVPEARREDAAVKAVQAMIDLAAQAEQVGPIAELEQKVAADPLDHQAR
FDLATALNAAGRRDEATTHLLEIVRRDRKWNEDGARKQLVQLFEAWGPTDDATIEGRKRLSTILFS

Sequences:

>Translated_306_residues
MTIIEQGSGAAPQAAPDLIKDTTTQTFVRDVIEESKLQPVLIDFWAPWCGPCRQLTPMLEKAVRAAGGKVKLVKMNIDEH
PSIPGQMGIQSIPAVIAFVDGRPADGFMGAVPESQVAAFIEKLTAGVPGGAPTAAELLQEAEAVMAEGDLQTAGAIYAEV
LRADAANVEAIVGLARCYMVSGAVDEAKATLAQVPEARREDAAVKAVQAMIDLAAQAEQVGPIAELEQKVAADPLDHQAR
FDLATALNAAGRRDEATTHLLEIVRRDRKWNEDGARKQLVQLFEAWGPTDDATIEGRKRLSTILFS
>Mature_305_residues
TIIEQGSGAAPQAAPDLIKDTTTQTFVRDVIEESKLQPVLIDFWAPWCGPCRQLTPMLEKAVRAAGGKVKLVKMNIDEHP
SIPGQMGIQSIPAVIAFVDGRPADGFMGAVPESQVAAFIEKLTAGVPGGAPTAAELLQEAEAVMAEGDLQTAGAIYAEVL
RADAANVEAIVGLARCYMVSGAVDEAKATLAQVPEARREDAAVKAVQAMIDLAAQAEQVGPIAELEQKVAADPLDHQARF
DLATALNAAGRRDEATTHLLEIVRRDRKWNEDGARKQLVQLFEAWGPTDDATIEGRKRLSTILFS

Specific function: Unknown

COG id: COG3118

COG function: function code O; Thioredoxin domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI21361403, Length=85, Percent_Identity=42.3529411764706, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI5031973, Length=112, Percent_Identity=35.7142857142857, Blast_Score=70, Evalue=3e-12,
Organism=Escherichia coli, GI87081747, Length=285, Percent_Identity=29.1228070175439, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1788936, Length=84, Percent_Identity=40.4761904761905, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI87082331, Length=105, Percent_Identity=34.2857142857143, Blast_Score=79, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI212646193, Length=103, Percent_Identity=38.8349514563107, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI28573567, Length=137, Percent_Identity=27.7372262773723, Blast_Score=71, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005746
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR013766
- InterPro:   IPR012335
- InterPro:   IPR011990 [H]

Pfam domain/function: PF00085 Thioredoxin [H]

EC number: NA

Molecular weight: Translated: 32642; Mature: 32510

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: PS00194 THIOREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIIEQGSGAAPQAAPDLIKDTTTQTFVRDVIEESKLQPVLIDFWAPWCGPCRQLTPMLE
CCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHH
KAVRAAGGKVKLVKMNIDEHPSIPGQMGIQSIPAVIAFVDGRPADGFMGAVPESQVAAFI
HHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCCCHHHHHHHH
EKLTAGVPGGAPTAAELLQEAEAVMAEGDLQTAGAIYAEVLRADAANVEAIVGLARCYMV
HHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
SGAVDEAKATLAQVPEARREDAAVKAVQAMIDLAAQAEQVGPIAELEQKVAADPLDHQAR
HCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHH
FDLATALNAAGRRDEATTHLLEIVRRDRKWNEDGARKQLVQLFEAWGPTDDATIEGRKRL
HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHH
STILFS
HHHHCC
>Mature Secondary Structure 
TIIEQGSGAAPQAAPDLIKDTTTQTFVRDVIEESKLQPVLIDFWAPWCGPCRQLTPMLE
CEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHH
KAVRAAGGKVKLVKMNIDEHPSIPGQMGIQSIPAVIAFVDGRPADGFMGAVPESQVAAFI
HHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCCCHHHHHHHH
EKLTAGVPGGAPTAAELLQEAEAVMAEGDLQTAGAIYAEVLRADAANVEAIVGLARCYMV
HHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
SGAVDEAKATLAQVPEARREDAAVKAVQAMIDLAAQAEQVGPIAELEQKVAADPLDHQAR
HCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHH
FDLATALNAAGRRDEATTHLLEIVRRDRKWNEDGARKQLVQLFEAWGPTDDATIEGRKRL
HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHH
STILFS
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]