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The map label for this gene is ycaR [C]

Identifier: 86747420

GI number: 86747420

Start: 333696

End: 333893

Strand: Reverse

Name: ycaR [C]

Synonym: RPB_0294

Alternate gene names: 86747420

Gene position: 333893-333696 (Counterclockwise)

Preceding gene: 86747421

Following gene: 162138525

Centisome position: 6.26

GC content: 65.15

Gene sequence:

>198_bases
ATGACGACACCCCCCGAGCGCCCCGAGACCTCCGTCGATCGCAAGCTCCTCGAAATCCTGGTATGCCCCGTCACCAAGGG
GCCGCTGGAATTCGACGCCGCCCGGCAGGAATTGATCTCGCGCGGTGCCAAGCTGGCTTATCCGATCCGCGACGGCATTC
CGATCATGCTGCCGGAAGAGGCGCGCAAGCTGGGGTGA

Upstream 100 bases:

>100_bases
TCCGCTGCAGTGAGCGCAGCCCCGAATTGCGCCGCCGCGTTGACGCCGGCGCCGACTTGCCTCTTCAATCCCGCAATATT
CCCCATCCAGATCGTGGACC

Downstream 100 bases:

>100_bases
GGTTGCCGCGGGCGTCGGCTTAGCGGCACAGCCTGGCGGCCTGGGTTCAATCCAGCCCGTGGCGCAGGCTCGCCGCGGCG
CCCAGCGGTCCGATCACCCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 65; Mature: 64

Protein sequence:

>65_residues
MTTPPERPETSVDRKLLEILVCPVTKGPLEFDAARQELISRGAKLAYPIRDGIPIMLPEEARKLG

Sequences:

>Translated_65_residues
MTTPPERPETSVDRKLLEILVCPVTKGPLEFDAARQELISRGAKLAYPIRDGIPIMLPEEARKLG
>Mature_64_residues
TTPPERPETSVDRKLLEILVCPVTKGPLEFDAARQELISRGAKLAYPIRDGIPIMLPEEARKLG

Specific function: Unknown

COG id: COG2835

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0434 family

Homologues:

Organism=Escherichia coli, GI1787146, Length=53, Percent_Identity=50.9433962264151, Blast_Score=62, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y294_RHOP2 (Q2J3F5)

Other databases:

- EMBL:   CP000250
- RefSeq:   YP_483916.1
- ProteinModelPortal:   Q2J3F5
- SMR:   Q2J3F5
- STRING:   Q2J3F5
- GeneID:   3907922
- GenomeReviews:   CP000250_GR
- KEGG:   rpb:RPB_0294
- eggNOG:   COG2835
- HOGENOM:   HBG713593
- OMA:   NELVSEK
- ProtClustDB:   CLSK772852
- BioCyc:   RPAL316058:RPB_0294-MONOMER
- HAMAP:   MF_01187
- InterPro:   IPR005651

Pfam domain/function: PF03966 Trm112p

EC number: NA

Molecular weight: Translated: 7229; Mature: 7097

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTPPERPETSVDRKLLEILVCPVTKGPLEFDAARQELISRGAKLAYPIRDGIPIMLPEE
CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEECCCCCCCCEEECHH
ARKLG
HHCCC
>Mature Secondary Structure 
TTPPERPETSVDRKLLEILVCPVTKGPLEFDAARQELISRGAKLAYPIRDGIPIMLPEE
CCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEECCCCCCCCEEECHH
ARKLG
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA