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The map label for this gene is atpD [H]

Identifier: 86747391

GI number: 86747391

Start: 297934

End: 299364

Strand: Reverse

Name: atpD [H]

Synonym: RPB_0265

Alternate gene names: 86747391

Gene position: 299364-297934 (Counterclockwise)

Preceding gene: 86747392

Following gene: 86747390

Centisome position: 5.61

GC content: 65.76

Gene sequence:

>1431_bases
ATGGCTACACCCGCCAATCAGACCGGACGCATCACCCAGGTCATCGGCGCCGTCGTCGACGTGCAGTTCGAAGGCCATCT
GCCGGCCATTCTGAACGCGATCGAGACCAAGAACGGCGACAACCGCCTGGTGCTCGAAGTCGCCCAGCATCTCGGCGAAT
CGACCGTCCGCACCATCGCGATGGACACCACCGAGGGTCTGGTCCGCGGCCAGGAAGTCACCGACACCGGCAACCCGATC
ATGGTGCCGGTCGGCGTCGGCACGCTCGGCCGCATCATGAACGTGATCGGCGAGCCGGTCGACGAGCAGGGCCCGGTCGC
CAATGAGGGTCTGCGTCCGATCCACGCGGAAGCCCCGACCTACACCGACCAGTCGACCGAAGCGGAAATCCTCGTCACCG
GCATCAAGGTCGTCGACCTGCTGGCGCCCTACGCCAAGGGCGGCAAGATCGGCCTGTTCGGCGGCGCCGGCGTCGGCAAG
ACCGTGCTGATCCAGGAACTGATCAATAACGTCGCCAAGGCCCACGGCGGCTACTCGGTGTTCGCCGGCGTCGGCGAGCG
CACCCGCGAAGGCAACGACCTCTACCACGAGTTCATCGAATCCGGCGTCAACAAGAAGGGCGGCGGCGAAGGCTCGAAAT
GCGCCCTCGTTTACGGCCAGATGAACGAGCCGCCGGGCGCCCGCGCCCGCGTCGCGCTGTCGGGTCTGACCGTCGCCGAG
CATTTCCGCGACCAGGGCCAGGACGTGCTGTTCTTCGTCGACAACATCTTCCGCTTCACCCAGGCCGGCTCGGAAGTGTC
GGCGCTGCTCGGCCGTATTCCTTCGGCGGTGGGCTATCAGCCGACGCTCGCCACCGACATGGGCGCGCTGCAGGAGCGCA
TCACCACCACCCATAAGGGCTCGATCACGTCGGTGCAGGCGATCTACGTGCCGGCCGACGATTTGACCGACCCGGCGCCC
GCCACCTCGTTCGCGCATCTTGACGCGACCACCGTGCTCAACCGCGCGATCTCGGAAAAGGGCATCTATCCGGCGGTCGA
CCCGCTCGACTCGACCTCGCGCATGCTCTCCCCGCTGATCGTCGGCGAGGAGCACTACCAGACCGCCCGTATGGTCCAGC
AGGTGCTGCAGAAGTACAAGTCGCTGCAGGACATCATCGCGATTCTCGGGATGGACGAACTGTCCGAAGAGGACAAGCTC
GCCGTCGCCCGCGCCCGCAAGATCGAGCGCTTCCTGTCACAGCCGTTCTTCGTCGCCGAAATCTTCACCGGCTCGCCGGG
CAAGTTCGTCGACCTCGCCGACACCATCAAGGGCTTCCGCGCGATCTGCGAAGGCAAGTATGATCACCTCCCGGAGGCCG
CCTTCTACATGGTCGGCGCCATCGAAGAGGCGGTCGAAAAGGGCAAGAAGCTGGCCGCGGAAGCGGCCTGA

Upstream 100 bases:

>100_bases
GAGATCATCTCGGGCGCCGAGGCGATCTGACGACACGACTTCAGGCTTACATCCGGTCGACGACCGCGATTTGGATTTCG
GACTTCAGGGAGAGAGTTTA

Downstream 100 bases:

>100_bases
TCAACTAAGCCTCACCCTGAGGAGCCGGCCGTAGGCCGGCGTCTCGAAGGGTGACGAACAACTCACTCATCCTTCGAGAC
GCGCGCAACGGCGCGCTCCT

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 476; Mature: 475

Protein sequence:

>476_residues
MATPANQTGRITQVIGAVVDVQFEGHLPAILNAIETKNGDNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVTDTGNPI
MVPVGVGTLGRIMNVIGEPVDEQGPVANEGLRPIHAEAPTYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGK
TVLIQELINNVAKAHGGYSVFAGVGERTREGNDLYHEFIESGVNKKGGGEGSKCALVYGQMNEPPGARARVALSGLTVAE
HFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTTHKGSITSVQAIYVPADDLTDPAP
ATSFAHLDATTVLNRAISEKGIYPAVDPLDSTSRMLSPLIVGEEHYQTARMVQQVLQKYKSLQDIIAILGMDELSEEDKL
AVARARKIERFLSQPFFVAEIFTGSPGKFVDLADTIKGFRAICEGKYDHLPEAAFYMVGAIEEAVEKGKKLAAEAA

Sequences:

>Translated_476_residues
MATPANQTGRITQVIGAVVDVQFEGHLPAILNAIETKNGDNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVTDTGNPI
MVPVGVGTLGRIMNVIGEPVDEQGPVANEGLRPIHAEAPTYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGK
TVLIQELINNVAKAHGGYSVFAGVGERTREGNDLYHEFIESGVNKKGGGEGSKCALVYGQMNEPPGARARVALSGLTVAE
HFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTTHKGSITSVQAIYVPADDLTDPAP
ATSFAHLDATTVLNRAISEKGIYPAVDPLDSTSRMLSPLIVGEEHYQTARMVQQVLQKYKSLQDIIAILGMDELSEEDKL
AVARARKIERFLSQPFFVAEIFTGSPGKFVDLADTIKGFRAICEGKYDHLPEAAFYMVGAIEEAVEKGKKLAAEAA
>Mature_475_residues
ATPANQTGRITQVIGAVVDVQFEGHLPAILNAIETKNGDNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVTDTGNPIM
VPVGVGTLGRIMNVIGEPVDEQGPVANEGLRPIHAEAPTYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKT
VLIQELINNVAKAHGGYSVFAGVGERTREGNDLYHEFIESGVNKKGGGEGSKCALVYGQMNEPPGARARVALSGLTVAEH
FRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTTHKGSITSVQAIYVPADDLTDPAPA
TSFAHLDATTVLNRAISEKGIYPAVDPLDSTSRMLSPLIVGEEHYQTARMVQQVLQKYKSLQDIIAILGMDELSEEDKLA
VARARKIERFLSQPFFVAEIFTGSPGKFVDLADTIKGFRAICEGKYDHLPEAAFYMVGAIEEAVEKGKKLAAEAA

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=469, Percent_Identity=80.1705756929638, Blast_Score=743, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=302, Percent_Identity=27.8145695364238, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI19913426, Length=373, Percent_Identity=26.2734584450402, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI19913428, Length=364, Percent_Identity=26.0989010989011, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI50345984, Length=297, Percent_Identity=25.5892255892256, Blast_Score=90, Evalue=4e-18,
Organism=Homo sapiens, GI4757810, Length=297, Percent_Identity=25.5892255892256, Blast_Score=90, Evalue=4e-18,
Organism=Escherichia coli, GI1790170, Length=465, Percent_Identity=69.6774193548387, Blast_Score=660, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=368, Percent_Identity=29.8913043478261, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1790172, Length=325, Percent_Identity=25.8461538461538, Blast_Score=107, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI25144756, Length=474, Percent_Identity=75.3164556962025, Blast_Score=721, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17565854, Length=322, Percent_Identity=27.639751552795, Blast_Score=123, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI17510931, Length=357, Percent_Identity=25.4901960784314, Blast_Score=109, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI17570191, Length=357, Percent_Identity=25.4901960784314, Blast_Score=105, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI71988080, Length=320, Percent_Identity=25.625, Blast_Score=99, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI71988063, Length=320, Percent_Identity=25.625, Blast_Score=99, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI71988074, Length=295, Percent_Identity=25.0847457627119, Blast_Score=81, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6322581, Length=460, Percent_Identity=75.8695652173913, Blast_Score=706, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=371, Percent_Identity=26.9541778975741, Blast_Score=107, Evalue=3e-24,
Organism=Saccharomyces cerevisiae, GI6319370, Length=359, Percent_Identity=25.9052924791086, Blast_Score=97, Evalue=6e-21,
Organism=Saccharomyces cerevisiae, GI6320016, Length=254, Percent_Identity=25.9842519685039, Blast_Score=82, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24638766, Length=470, Percent_Identity=78.936170212766, Blast_Score=735, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=469, Percent_Identity=68.8699360341151, Blast_Score=647, Evalue=0.0,
Organism=Drosophila melanogaster, GI24638768, Length=91, Percent_Identity=72.5274725274725, Blast_Score=130, Evalue=2e-30,
Organism=Drosophila melanogaster, GI20129479, Length=335, Percent_Identity=26.5671641791045, Blast_Score=123, Evalue=3e-28,
Organism=Drosophila melanogaster, GI24583988, Length=332, Percent_Identity=26.5060240963855, Blast_Score=119, Evalue=4e-27,
Organism=Drosophila melanogaster, GI24583986, Length=332, Percent_Identity=26.5060240963855, Blast_Score=119, Evalue=4e-27,
Organism=Drosophila melanogaster, GI24583984, Length=332, Percent_Identity=26.5060240963855, Blast_Score=119, Evalue=4e-27,
Organism=Drosophila melanogaster, GI24583992, Length=302, Percent_Identity=27.4834437086093, Blast_Score=118, Evalue=9e-27,
Organism=Drosophila melanogaster, GI281361666, Length=366, Percent_Identity=25.6830601092896, Blast_Score=103, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24646341, Length=366, Percent_Identity=25.6830601092896, Blast_Score=103, Evalue=3e-22,
Organism=Drosophila melanogaster, GI17136796, Length=366, Percent_Identity=25.6830601092896, Blast_Score=103, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24658560, Length=320, Percent_Identity=25, Blast_Score=82, Evalue=5e-16,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 50801; Mature: 50670

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATPANQTGRITQVIGAVVDVQFEGHLPAILNAIETKNGDNRLVLEVAQHLGESTVRTIA
CCCCCCCCCHHHHHHHHHHEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHEE
MDTTEGLVRGQEVTDTGNPIMVPVGVGTLGRIMNVIGEPVDEQGPVANEGLRPIHAEAPT
ECCHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCC
YTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAHGGYSV
CCCCCCCCEEEEHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEE
FAGVGERTREGNDLYHEFIESGVNKKGGGEGSKCALVYGQMNEPPGARARVALSGLTVAE
EECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEHHHHHHH
HFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTTHKG
HHHHCCCEEEEHHHHHHHHHHCCHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHCCCC
SITSVQAIYVPADDLTDPAPATSFAHLDATTVLNRAISEKGIYPAVDPLDSTSRMLSPLI
CCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
VGEEHYQTARMVQQVLQKYKSLQDIIAILGMDELSEEDKLAVARARKIERFLSQPFFVAE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHCCCEEEEE
IFTGSPGKFVDLADTIKGFRAICEGKYDHLPEAAFYMVGAIEEAVEKGKKLAAEAA
EEECCCCCEEHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ATPANQTGRITQVIGAVVDVQFEGHLPAILNAIETKNGDNRLVLEVAQHLGESTVRTIA
CCCCCCCCHHHHHHHHHHEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHEE
MDTTEGLVRGQEVTDTGNPIMVPVGVGTLGRIMNVIGEPVDEQGPVANEGLRPIHAEAPT
ECCHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCC
YTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAHGGYSV
CCCCCCCCEEEEHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEE
FAGVGERTREGNDLYHEFIESGVNKKGGGEGSKCALVYGQMNEPPGARARVALSGLTVAE
EECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEHHHHHHH
HFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTTHKG
HHHHCCCEEEEHHHHHHHHHHCCHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHCCCC
SITSVQAIYVPADDLTDPAPATSFAHLDATTVLNRAISEKGIYPAVDPLDSTSRMLSPLI
CCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
VGEEHYQTARMVQQVLQKYKSLQDIIAILGMDELSEEDKLAVARARKIERFLSQPFFVAE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHCCCEEEEE
IFTGSPGKFVDLADTIKGFRAICEGKYDHLPEAAFYMVGAIEEAVEKGKKLAAEAA
EEECCCCCEEHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA