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The map label for this gene is dppB [H]

Identifier: 86747350

GI number: 86747350

Start: 252011

End: 252964

Strand: Reverse

Name: dppB [H]

Synonym: RPB_0224

Alternate gene names: 86747350

Gene position: 252964-252011 (Counterclockwise)

Preceding gene: 86747351

Following gene: 86747349

Centisome position: 4.74

GC content: 67.09

Gene sequence:

>954_bases
GTGCTCGTCTACATCGCCCGCCGCATCGTCTATGTGATTCCGATCGTGCTCAGCGTCGCGCTGGTGTGCTTTCTCCTGGT
GCACATCACGCCCGGCGATCCGCTGGTCGCGGTGCTGCCGGCGGATGCGTCACAGGAGCTCGCCGCGCAGCTGCGCGCCG
CCTACGGCTTCGACCGGCCGCTGCCGGTGCAGTTCGGGCTGTGGCTGTGGAAGGCGCTGCACGGCGATCTCGGCACCTCG
ATCGCGACCGGCCGCCCGGTGCTGAGCGAAGTGCTGCGCGCCGTCGGCAACACCGTGACGCTGGCGATCGCGGCGGCGAT
CATCGGCTTTTCGCTCGGGCTGATGTTCGGCCTGCTGGCCGGTTACTTCCGCGATAGCTGGATCGACAAAGTCTCGACCT
CGATCGCGATCGCCGGCGTCTCCGTGCCGCATTACTGGCTCGGCATGGTGCTGGTGATCATCTTCTCGGTGCAGCTCAAC
TGGCTGCCTGCGGTCGGCGCCGGCCCCGGCGGCTCGGGGCAATGGGGCTGGGACTGGGCGCATCTGAAATATCTGGTGCT
GCCGGCGATCACCACGTCCGTTATTCCAATGGGCATCGTCACCCGCACCGTGCGGGCGCTGACCGGTGATATCCTGTCGC
AGGACTTCGTCGAGGCGCTGCGCGCCAAGGGGCTGCGCGAGACGCAGGTGTTCCGCCACGTGCTGAAGAACGCAGCCCCG
ACCGCGCTGGCGGTGATGGGCTTGCAGCTCGGCTACATGCTCGGCGGCTCGATCCTGATCGAGACGGTGTTCTCCTGGCC
GGGCTCGGGGCTGTTGCTCAACTCCGCGATCTTCCAGCGCGATTTGCCGCTGCTGCAGGGCACCATCCTGGTGCTGGCGC
TGTTCTTCGTGTTCCTCAATCTGGTGGTGGACATCGCGCAGGCCGCGATCGACCCGCGCATCAAGCGCGCCTGA

Upstream 100 bases:

>100_bases
AGCCCAGTACGCTGATCACTGGATTGCTTCGCTGCGCTCGCAATGACGGAGGAAGACGCATCGATCCGACCGACTTCATC
CTCGTTCGAGTGAGAGTCCT

Downstream 100 bases:

>100_bases
GCAGGAAGGATTGCCGCTCATGACCGCGATCACCGAAACCGCCGTGCAGACCGCGCCCGCCGGCAACGCGCGCGGCTACT
GGTCCACCGTCGGCCGCAGG

Product: binding-protein dependent transport system inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MLVYIARRIVYVIPIVLSVALVCFLLVHITPGDPLVAVLPADASQELAAQLRAAYGFDRPLPVQFGLWLWKALHGDLGTS
IATGRPVLSEVLRAVGNTVTLAIAAAIIGFSLGLMFGLLAGYFRDSWIDKVSTSIAIAGVSVPHYWLGMVLVIIFSVQLN
WLPAVGAGPGGSGQWGWDWAHLKYLVLPAITTSVIPMGIVTRTVRALTGDILSQDFVEALRAKGLRETQVFRHVLKNAAP
TALAVMGLQLGYMLGGSILIETVFSWPGSGLLLNSAIFQRDLPLLQGTILVLALFFVFLNLVVDIAQAAIDPRIKRA

Sequences:

>Translated_317_residues
MLVYIARRIVYVIPIVLSVALVCFLLVHITPGDPLVAVLPADASQELAAQLRAAYGFDRPLPVQFGLWLWKALHGDLGTS
IATGRPVLSEVLRAVGNTVTLAIAAAIIGFSLGLMFGLLAGYFRDSWIDKVSTSIAIAGVSVPHYWLGMVLVIIFSVQLN
WLPAVGAGPGGSGQWGWDWAHLKYLVLPAITTSVIPMGIVTRTVRALTGDILSQDFVEALRAKGLRETQVFRHVLKNAAP
TALAVMGLQLGYMLGGSILIETVFSWPGSGLLLNSAIFQRDLPLLQGTILVLALFFVFLNLVVDIAQAAIDPRIKRA
>Mature_317_residues
MLVYIARRIVYVIPIVLSVALVCFLLVHITPGDPLVAVLPADASQELAAQLRAAYGFDRPLPVQFGLWLWKALHGDLGTS
IATGRPVLSEVLRAVGNTVTLAIAAAIIGFSLGLMFGLLAGYFRDSWIDKVSTSIAIAGVSVPHYWLGMVLVIIFSVQLN
WLPAVGAGPGGSGQWGWDWAHLKYLVLPAITTSVIPMGIVTRTVRALTGDILSQDFVEALRAKGLRETQVFRHVLKNAAP
TALAVMGLQLGYMLGGSILIETVFSWPGSGLLLNSAIFQRDLPLLQGTILVLALFFVFLNLVVDIAQAAIDPRIKRA

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789888, Length=320, Percent_Identity=39.0625, Blast_Score=224, Evalue=7e-60,
Organism=Escherichia coli, GI1787053, Length=316, Percent_Identity=38.2911392405063, Blast_Score=223, Evalue=1e-59,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=34.9112426035503, Blast_Score=198, Evalue=4e-52,
Organism=Escherichia coli, GI1787761, Length=323, Percent_Identity=35.2941176470588, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1787497, Length=320, Percent_Identity=31.25, Blast_Score=137, Evalue=6e-34,
Organism=Escherichia coli, GI1787550, Length=332, Percent_Identity=30.421686746988, Blast_Score=131, Evalue=5e-32,
Organism=Escherichia coli, GI1788504, Length=362, Percent_Identity=25.1381215469613, Blast_Score=111, Evalue=6e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34100; Mature: 34100

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVYIARRIVYVIPIVLSVALVCFLLVHITPGDPLVAVLPADASQELAAQLRAAYGFDRP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCC
LPVQFGLWLWKALHGDLGTSIATGRPVLSEVLRAVGNTVTLAIAAAIIGFSLGLMFGLLA
CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
GYFRDSWIDKVSTSIAIAGVSVPHYWLGMVLVIIFSVQLNWLPAVGAGPGGSGQWGWDWA
HHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
HLKYLVLPAITTSVIPMGIVTRTVRALTGDILSQDFVEALRAKGLRETQVFRHVLKNAAP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCH
TALAVMGLQLGYMLGGSILIETVFSWPGSGLLLNSAIFQRDLPLLQGTILVLALFFVFLN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LVVDIAQAAIDPRIKRA
HHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLVYIARRIVYVIPIVLSVALVCFLLVHITPGDPLVAVLPADASQELAAQLRAAYGFDRP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCC
LPVQFGLWLWKALHGDLGTSIATGRPVLSEVLRAVGNTVTLAIAAAIIGFSLGLMFGLLA
CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
GYFRDSWIDKVSTSIAIAGVSVPHYWLGMVLVIIFSVQLNWLPAVGAGPGGSGQWGWDWA
HHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
HLKYLVLPAITTSVIPMGIVTRTVRALTGDILSQDFVEALRAKGLRETQVFRHVLKNAAP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCH
TALAVMGLQLGYMLGGSILIETVFSWPGSGLLLNSAIFQRDLPLLQGTILVLALFFVFLN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LVVDIAQAAIDPRIKRA
HHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]