Click here to switch to the map view.

The map label for this gene is nodV [H]

Identifier: 86747339

GI number: 86747339

Start: 238556

End: 240463

Strand: Reverse

Name: nodV [H]

Synonym: RPB_0213

Alternate gene names: 86747339

Gene position: 240463-238556 (Counterclockwise)

Preceding gene: 86747340

Following gene: 86747338

Centisome position: 4.51

GC content: 65.67

Gene sequence:

>1908_bases
GTGACGACGATCGACCAAAGGAGGCGGCAGGTCGTAATCCTGGCGGCCTTCATTTCCTTGCTGCTGATTTTCGCTGCTGA
TGCGCTGAGCCCGATCGACGGCGCGGTGGCCGTTCTCTACACCGGTGTCGTGCTGATGGTCGCGCCGCTGGGGCGCCGGT
TCATCCTCGCGGCCGGCTACATCTCGGCCGTGCTGACGGCGACCGCCTTCCTGTGGGGACATGCGAACGATCTGGTCAGC
GGCGCCCTGCTGCGTTTCGCGGTCAGTCTGGTCGCCATCCTGATCACCGTCCTGCTGTCGTTGCGCGATCGTTCGGCGCG
CGTCACCCTCGCCGAGCAGGGGAGGATCCTCGAACTCTCGCACGACACCGTGGTGATCCGTGATCCATCCGGCGTCGTGC
GCTATTGGAACGAGGGCGCGGCACGGCTGTACGGCTGGACCCGGGGGGAAGCCATCGGCCGGCAATGCGACGACCTGCTG
CAGGGAATTGTGCCGGTCGAGGAGATCAATCAGTCGCTGCGACGGACCGGCGCCTGGTCCGGCGAAATCGTCCGCACCCG
ACGCGACGGGACACCGCTCGTCCTGGCGACGCGATGGCTGCAACGACGCGATCCGGAAGGACGCCCGATCGGCGTCATCG
AGACCAGTGCGGACCTGACCGAACGTCGCCGTGCCCAGGCCGAGCAGCGGCGTTCGGAACATCGCTTCAGCACCATCTTC
AACTCTGGCGGTTTTGCCGCTCTGGAATGCGACCTCAGCGGCGCGATGCGCCTGGTCTTGGCCGCCGGAACAGGTGAGGA
GCTTGCACCGGCGGTGCGCGCCTATCCGCAGCTACTCGACAAGGCGGCGGATGAGATCAGAATCTACAACGCCAACACGG
CCGCCCTGGTGATGTTCGAAGCGGAGACCACGGCCGATCTCTCTTCGGGCAAAGTGTTGCGCGGTTCGAAGCAGGACACC
GGGTGGGCATTGGAGACCATTTTTACGCAACTGGCCGCCGGCGCAATGCTGGTCGAAACCGAAGCCCGGTTCGCGACGCT
GAGCGGCCAACCCATCGACGCGGTTCTGCGCCTGTCGGTGCTCCCCGACGGGGTTGATTGGTCGCGCGTGTTGCTGATGG
CGTTCGACGTGACCGAGCGCAACCGAGCCCGGGCCAAGATCGAACAAACCTCCGTAGAACTGGCGCATGCCGGCCGCGTC
TCGGTGCTCGGCCAGCTCGCCGCCTCGATCGCGCACGAAGTCAATCAGCCGCTGGCGGCCATCATCAACTACGGAAAATC
CGGCAAGCGCTGGCTGACGCGCGCGGAACCCGATTTGGTCGAGGTCGCCGACTGCCTGGACAAGATCGTCTCGAACGGCA
ACCGCGCCGCAGATGTCGTCGGCAGGGTCCGCTCCCTCGCGAGGAAGTCGGCCCCACAGGCCGGTCCGGTGGATCTTGCC
GCTCTGGTCCAGGACGCGGCGGCTCTGCTGGCCCGGGAGACCCGCAGTGCGGGGACAGCGATCCGGATCGATCAGAATGG
ACGGCTGCCTCAGGTCGAATGTGACCGCGTGCAAGTCCAGCAGGTCGTCGTCAATCTGATGATGAACGCGCTGCAAGCGA
CACGCGGCGCCGGTAGCAGCAGCGAAATCCGTGTCAGTCTGGACGGAACGGCCGACGACGCCATCGTCGTCGCGGTGCGG
GACTCCGGAACCGGCATCGCTGGGGATCCGCACCGGATTTTCGATCCGTTCTTCTCGACAAAGCCGGACGGCATGGGCCT
CGGATTATCGATCTGCAAGACCATCATCGAGGCACAAGGCGGCTCCATCTCCGCATCCAACAACGTGGGCCCAGGCGCCA
CCGTTGCCTTCACCCTGCCGCGCAAGGCTTCGGCCGAAGCGGCGGGCGCGCGTCGTCTCATATCTTGA

Upstream 100 bases:

>100_bases
GCATCACGATGATGCGAGCTAACTTTGCTCGCGTCGGAGGCGGTCCGCAACGAATGCGTGCCCTCCACAAATTGACTGGG
CAACCCAGTGAGGTCAAGTA

Downstream 100 bases:

>100_bases
TATGATGGGCAGCGGCCGGCGGATTCGTCATACCATCGAGACAGCCGGACAAGGCTATCCCGGTGGGAGACGACGTTGCT
GCACCTATCCACCATCACCA

Product: multi-sensor signal transduction histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 635; Mature: 634

Protein sequence:

>635_residues
MTTIDQRRRQVVILAAFISLLLIFAADALSPIDGAVAVLYTGVVLMVAPLGRRFILAAGYISAVLTATAFLWGHANDLVS
GALLRFAVSLVAILITVLLSLRDRSARVTLAEQGRILELSHDTVVIRDPSGVVRYWNEGAARLYGWTRGEAIGRQCDDLL
QGIVPVEEINQSLRRTGAWSGEIVRTRRDGTPLVLATRWLQRRDPEGRPIGVIETSADLTERRRAQAEQRRSEHRFSTIF
NSGGFAALECDLSGAMRLVLAAGTGEELAPAVRAYPQLLDKAADEIRIYNANTAALVMFEAETTADLSSGKVLRGSKQDT
GWALETIFTQLAAGAMLVETEARFATLSGQPIDAVLRLSVLPDGVDWSRVLLMAFDVTERNRARAKIEQTSVELAHAGRV
SVLGQLAASIAHEVNQPLAAIINYGKSGKRWLTRAEPDLVEVADCLDKIVSNGNRAADVVGRVRSLARKSAPQAGPVDLA
ALVQDAAALLARETRSAGTAIRIDQNGRLPQVECDRVQVQQVVVNLMMNALQATRGAGSSSEIRVSLDGTADDAIVVAVR
DSGTGIAGDPHRIFDPFFSTKPDGMGLGLSICKTIIEAQGGSISASNNVGPGATVAFTLPRKASAEAAGARRLIS

Sequences:

>Translated_635_residues
MTTIDQRRRQVVILAAFISLLLIFAADALSPIDGAVAVLYTGVVLMVAPLGRRFILAAGYISAVLTATAFLWGHANDLVS
GALLRFAVSLVAILITVLLSLRDRSARVTLAEQGRILELSHDTVVIRDPSGVVRYWNEGAARLYGWTRGEAIGRQCDDLL
QGIVPVEEINQSLRRTGAWSGEIVRTRRDGTPLVLATRWLQRRDPEGRPIGVIETSADLTERRRAQAEQRRSEHRFSTIF
NSGGFAALECDLSGAMRLVLAAGTGEELAPAVRAYPQLLDKAADEIRIYNANTAALVMFEAETTADLSSGKVLRGSKQDT
GWALETIFTQLAAGAMLVETEARFATLSGQPIDAVLRLSVLPDGVDWSRVLLMAFDVTERNRARAKIEQTSVELAHAGRV
SVLGQLAASIAHEVNQPLAAIINYGKSGKRWLTRAEPDLVEVADCLDKIVSNGNRAADVVGRVRSLARKSAPQAGPVDLA
ALVQDAAALLARETRSAGTAIRIDQNGRLPQVECDRVQVQQVVVNLMMNALQATRGAGSSSEIRVSLDGTADDAIVVAVR
DSGTGIAGDPHRIFDPFFSTKPDGMGLGLSICKTIIEAQGGSISASNNVGPGATVAFTLPRKASAEAAGARRLIS
>Mature_634_residues
TTIDQRRRQVVILAAFISLLLIFAADALSPIDGAVAVLYTGVVLMVAPLGRRFILAAGYISAVLTATAFLWGHANDLVSG
ALLRFAVSLVAILITVLLSLRDRSARVTLAEQGRILELSHDTVVIRDPSGVVRYWNEGAARLYGWTRGEAIGRQCDDLLQ
GIVPVEEINQSLRRTGAWSGEIVRTRRDGTPLVLATRWLQRRDPEGRPIGVIETSADLTERRRAQAEQRRSEHRFSTIFN
SGGFAALECDLSGAMRLVLAAGTGEELAPAVRAYPQLLDKAADEIRIYNANTAALVMFEAETTADLSSGKVLRGSKQDTG
WALETIFTQLAAGAMLVETEARFATLSGQPIDAVLRLSVLPDGVDWSRVLLMAFDVTERNRARAKIEQTSVELAHAGRVS
VLGQLAASIAHEVNQPLAAIINYGKSGKRWLTRAEPDLVEVADCLDKIVSNGNRAADVVGRVRSLARKSAPQAGPVDLAA
LVQDAAALLARETRSAGTAIRIDQNGRLPQVECDRVQVQQVVVNLMMNALQATRGAGSSSEIRVSLDGTADDAIVVAVRD
SGTGIAGDPHRIFDPFFSTKPDGMGLGLSICKTIIEAQGGSISASNNVGPGATVAFTLPRKASAEAAGARRLIS

Specific function: Member of the two-component regulatory system nodV/nodW probably involved in the regulation of the transcription of genes involved in the nodulation process. NodV may function as a membrane-associated protein kinase that phosphorylates nodW in response to

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1790436, Length=229, Percent_Identity=31.0043668122271, Blast_Score=112, Evalue=9e-26,
Organism=Escherichia coli, GI1788549, Length=238, Percent_Identity=31.9327731092437, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI48994928, Length=270, Percent_Identity=27.4074074074074, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1789149, Length=254, Percent_Identity=24.0157480314961, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1790300, Length=250, Percent_Identity=28.4, Blast_Score=63, Evalue=7e-11,
Organism=Escherichia coli, GI1788393, Length=227, Percent_Identity=27.3127753303965, Blast_Score=62, Evalue=8e-11,
Organism=Escherichia coli, GI1788713, Length=272, Percent_Identity=26.8382352941176, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767
- InterPro:   IPR004358
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 67915; Mature: 67783

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTIDQRRRQVVILAAFISLLLIFAADALSPIDGAVAVLYTGVVLMVAPLGRRFILAAGY
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
ISAVLTATAFLWGHANDLVSGALLRFAVSLVAILITVLLSLRDRSARVTLAEQGRILELS
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEE
HDTVVIRDPSGVVRYWNEGAARLYGWTRGEAIGRQCDDLLQGIVPVEEINQSLRRTGAWS
CCEEEEECCCCHHHHHCCCCHHEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
GEIVRTRRDGTPLVLATRWLQRRDPEGRPIGVIETSADLTERRRAQAEQRRSEHRFSTIF
CCEEEEECCCCCEEHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
NSGGFAALECDLSGAMRLVLAAGTGEELAPAVRAYPQLLDKAADEIRIYNANTAALVMFE
CCCCEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHEEEEECCCEEEEEEE
AETTADLSSGKVLRGSKQDTGWALETIFTQLAAGAMLVETEARFATLSGQPIDAVLRLSV
CCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCEEECCCCCHHHHHEEEE
LPDGVDWSRVLLMAFDVTERNRARAKIEQTSVELAHAGRVSVLGQLAASIAHEVNQPLAA
CCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHH
IINYGKSGKRWLTRAEPDLVEVADCLDKIVSNGNRAADVVGRVRSLARKSAPQAGPVDLA
HHHCCCCCCHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHH
ALVQDAAALLARETRSAGTAIRIDQNGRLPQVECDRVQVQQVVVNLMMNALQATRGAGSS
HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
SEIRVSLDGTADDAIVVAVRDSGTGIAGDPHRIFDPFFSTKPDGMGLGLSICKTIIEAQG
CEEEEEECCCCCCEEEEEEECCCCCCCCCCHHHHCHHHCCCCCCCCCCHHHHHHHHHCCC
GSISASNNVGPGATVAFTLPRKASAEAAGARRLIS
CCEECCCCCCCCCEEEEECCCCCCCHHHHHHHCCC
>Mature Secondary Structure 
TTIDQRRRQVVILAAFISLLLIFAADALSPIDGAVAVLYTGVVLMVAPLGRRFILAAGY
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
ISAVLTATAFLWGHANDLVSGALLRFAVSLVAILITVLLSLRDRSARVTLAEQGRILELS
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEE
HDTVVIRDPSGVVRYWNEGAARLYGWTRGEAIGRQCDDLLQGIVPVEEINQSLRRTGAWS
CCEEEEECCCCHHHHHCCCCHHEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
GEIVRTRRDGTPLVLATRWLQRRDPEGRPIGVIETSADLTERRRAQAEQRRSEHRFSTIF
CCEEEEECCCCCEEHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
NSGGFAALECDLSGAMRLVLAAGTGEELAPAVRAYPQLLDKAADEIRIYNANTAALVMFE
CCCCEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHEEEEECCCEEEEEEE
AETTADLSSGKVLRGSKQDTGWALETIFTQLAAGAMLVETEARFATLSGQPIDAVLRLSV
CCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCEEECCCCCHHHHHEEEE
LPDGVDWSRVLLMAFDVTERNRARAKIEQTSVELAHAGRVSVLGQLAASIAHEVNQPLAA
CCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHH
IINYGKSGKRWLTRAEPDLVEVADCLDKIVSNGNRAADVVGRVRSLARKSAPQAGPVDLA
HHHCCCCCCHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHH
ALVQDAAALLARETRSAGTAIRIDQNGRLPQVECDRVQVQQVVVNLMMNALQATRGAGSS
HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
SEIRVSLDGTADDAIVVAVRDSGTGIAGDPHRIFDPFFSTKPDGMGLGLSICKTIIEAQG
CEEEEEECCCCCCEEEEEEECCCCCCCCCCHHHHCHHHCCCCCCCCCCHHHHHHHHHCCC
GSISASNNVGPGATVAFTLPRKASAEAAGARRLIS
CCEECCCCCCCCCEEEEECCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2320582; 11157954; 12597275 [H]