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The map label for this gene is ctaD [H]

Identifier: 86747282

GI number: 86747282

Start: 167102

End: 169627

Strand: Reverse

Name: ctaD [H]

Synonym: RPB_0155

Alternate gene names: 86747282

Gene position: 169627-167102 (Counterclockwise)

Preceding gene: 86747283

Following gene: 86747281

Centisome position: 3.18

GC content: 67.74

Gene sequence:

>2526_bases
ATGACGAACCAGCGTCCGGACGCATCCGCAGCGGCGGCGAGCCCGATCCGCCTGCACAAGCAGCTCGAGGCGGTGTGGGG
CACGCCGGGCGGCTGGGGCCGGCTCGCAGCGGTGAACCACACCATCGTCGGCCGCCGCTTCATCGCCACCGCCTTCGTGT
TCTTCGGCATCGGCGGCATCCTGGCGATGCTGATCCGGGCGCAACTCGCGACGCCGCGCAGCGCGTTTCTCCAGCCCGAG
ATCTACAATCAGGTCTTCACCATGCACGGCACGGTGATGATGTTCCTGTTCGCGATCCCGATGTTCGAGGGCTTCGCGAT
CTATCTGCTGCCCAAGATCCTCGGCGCGCGCGACATGGCGTTTCCGCGGCTCGGCGCCTACGGCTATTGGTGCTATCTGT
TCGGCGGCTCGATGCTGCTGATCGCGATGGCGGTCGGGCTGGCGCCGAACGGCGGCTGGTTCATGTACACGCCGCTGAGC
TCGCGGGTCTATACGCCCGGCATCAATTCCGACATCTGGCTGATCGGCATCACCTTCGTGGAGATCTCGGCGCTGTCGGC
CGCGGTCGAAATCATCGCGACGATCCTGAAGATGCGCGCGCCCGGGATGTCGCTCGACAAGATGCCGCTGTTGGCGTGGT
ACCTGCTGGTCACCGCCTTCATGATGCTGTTCGGCTTTCCGCCGCTGATCCTCGGCTCGATCCTGCTCGAGGTCGAGCGC
GCGTTCGATCTGCCGTTCTTCGATCCGACCCGCGGCGGCGACGCGCTGCTTTGGCAGCATCTGTTCTGGCTGTTCGGCCA
TCCCGAGGTCTACATCATCTTCCTGCCGGCCGCCGGCATGGTCTCGACCATCCTGCCGGTGCTCGCGCGGCGCGAGATCC
TCGGCTACAGCGCGATCGTGATCAGCATCGTGGCGCTGGCGTTCCTCAGCTTCGGGCTGTGGGTCCACCACATGTTCACG
GTCGGCATTCCGCATCTCGCTTTGGCGTTCTTCTCCTCGGCGAGCACCGCGGTGGCGGTGCCGACCGCGGTGCAGATCTT
CGCCTGGATCGGCACGCTGGCGGCGGGGCGGCCGCAGCTCAAGCTGCCGATGCTGTATCTGCTCGGCTTCTTCTCGGTGT
TCGTGGTCGGCGGCCTCACCGGCGTGATGTTGGCGATCGTGCCGTTCAACTGGCAGGTCCACGACACCCATTTCGTCGTC
GCGCATCTGCACTACGTGTTGGTCGGCGGCTTCGTGTTTCCGATGTTGGCGGCGGCGTATTACTGGTTGCCGCATATCAC
CGGGCGGGTGCCGCGCCACAGCCTCGGCGTGCCGGCGTTCTGGCTGATCATCATCGGTTTCAATGTGACGTTCCTGGTGA
TGCATCTGACCGGCCTGCTCGGCATGCCGCGGCGGATTCACGGCTACGGCGCCGAGACCGGATGGGAGTGGCCGAATCTG
ATTTCATCGGCCGGCAGCTTCGTGATGGCGATCGGGTTTGCGCTGTTCACCGTCGATGTGCTGATGCACTGGCTGCACGG
CCAACGCAGTACGCGCAATCCATGGGGCGCCGGGACGCTGGAATGGTCCATCGCCGTGCCGCCGACGAACTACGCCTTCG
CCTCATTGCCCGATGTCGCGACGCGCACGCCGCTGCAGCAGCGGCCGGATCTCGGCAACCATCTGGCACGCGGCGGCGGC
TATCTCGGCTTCGTCCGCCACGGCTGGCTGGAGACGCTCGGCGTCGATGTGATGTCGGGGCGGGTCGAGCAGATCGTGCG
GCTGCCGAACCGCACGCTGCTGCCGCTGTTCACCGCGCTGGTGACGGGCGTGTTCTTCGTCGCGGTGCTGTTCAAGCTGT
ACGTCGTGGCGCTGCTGGCGCTGCCGGCGATCGTCGCGATGCTGCTGGCCTGGACGCCGGTGTCCGGCGAGCGGCGCGAT
CGCGGCGCGCTGCCGATCGGCCACGGCGCCGCGGCGGTGCTGCACAGCGAGGCGTCGTCGCCGCCGTCATTGTGGGCGCT
GGGGTTGACGCTCGCGGCTGACGCCACCGCCTTCGCGTCGCTCGCCTTCGGCATTCTGTTTCTGTGGGTGGTGGCGCCGA
ACTGGCCGCCGCCTGCGATGATCGCCTTCGCGCCCTGGGGAATCTCGTTGAGCACGGCCGGCCTCCTGCTCGGCTTCATC
GCCGGCCGGCTCGCGACCGCCCGCAGGGTGATCGGCAGCGGGCGTCGGCGCGAGGCGGCGCTGGCGGTCGCGGTGCTCGG
GCAGATCGTGGCGCTGTTCGGCATTGCCGACGTCATCCTCGCGGTGCCGCCGCCGACCCAGCACGCTTACGCCGCGGCGA
CCACGATCATCCTGATCTATGCCGGTCTGCACGCCGCGCTCGCCGCGGTGTTCGCCGGCTTCGGCATCTGGCGCAGCCGG
ACCGGCTACGTCTCGCAAACGCGGACCGTCGATCTGCGGATCGGCGCGCTGTGGAGCGACGCTACCGCCGCGATCGGGAT
CGCGACGCTGCTGATCGTCTACGGCCTGCCGCGCGTGATGGGGTGA

Upstream 100 bases:

>100_bases
AATTCTGCGGCACCGGCCACACCATCATGGATTTCAGCGTCGAGGCGCTCGAGGCGGATGCCTTCGCCGATCGGCTGCGC
GCGCTGCCACAGGACAAGCG

Downstream 100 bases:

>100_bases
CGGCATGACGCGTTCGCCCGCCCGTTCCGCCTCGCTGCTGCTGATCGCCTCCGGCTTCGTGGTCTGGGCCTCGGCTTTTT
CGTTGCTGTATGGCGGGCTG

Product: cytochrome-c oxidase

Products: NA

Alternate protein names: Caa-3605 subunit 1; Cytochrome aa3 subunit 1; Cytochrome c oxidase polypeptide I; Oxidase aa(3) subunit 1 [H]

Number of amino acids: Translated: 841; Mature: 840

Protein sequence:

>841_residues
MTNQRPDASAAAASPIRLHKQLEAVWGTPGGWGRLAAVNHTIVGRRFIATAFVFFGIGGILAMLIRAQLATPRSAFLQPE
IYNQVFTMHGTVMMFLFAIPMFEGFAIYLLPKILGARDMAFPRLGAYGYWCYLFGGSMLLIAMAVGLAPNGGWFMYTPLS
SRVYTPGINSDIWLIGITFVEISALSAAVEIIATILKMRAPGMSLDKMPLLAWYLLVTAFMMLFGFPPLILGSILLEVER
AFDLPFFDPTRGGDALLWQHLFWLFGHPEVYIIFLPAAGMVSTILPVLARREILGYSAIVISIVALAFLSFGLWVHHMFT
VGIPHLALAFFSSASTAVAVPTAVQIFAWIGTLAAGRPQLKLPMLYLLGFFSVFVVGGLTGVMLAIVPFNWQVHDTHFVV
AHLHYVLVGGFVFPMLAAAYYWLPHITGRVPRHSLGVPAFWLIIIGFNVTFLVMHLTGLLGMPRRIHGYGAETGWEWPNL
ISSAGSFVMAIGFALFTVDVLMHWLHGQRSTRNPWGAGTLEWSIAVPPTNYAFASLPDVATRTPLQQRPDLGNHLARGGG
YLGFVRHGWLETLGVDVMSGRVEQIVRLPNRTLLPLFTALVTGVFFVAVLFKLYVVALLALPAIVAMLLAWTPVSGERRD
RGALPIGHGAAAVLHSEASSPPSLWALGLTLAADATAFASLAFGILFLWVVAPNWPPPAMIAFAPWGISLSTAGLLLGFI
AGRLATARRVIGSGRRREAALAVAVLGQIVALFGIADVILAVPPPTQHAYAAATTIILIYAGLHAALAAVFAGFGIWRSR
TGYVSQTRTVDLRIGALWSDATAAIGIATLLIVYGLPRVMG

Sequences:

>Translated_841_residues
MTNQRPDASAAAASPIRLHKQLEAVWGTPGGWGRLAAVNHTIVGRRFIATAFVFFGIGGILAMLIRAQLATPRSAFLQPE
IYNQVFTMHGTVMMFLFAIPMFEGFAIYLLPKILGARDMAFPRLGAYGYWCYLFGGSMLLIAMAVGLAPNGGWFMYTPLS
SRVYTPGINSDIWLIGITFVEISALSAAVEIIATILKMRAPGMSLDKMPLLAWYLLVTAFMMLFGFPPLILGSILLEVER
AFDLPFFDPTRGGDALLWQHLFWLFGHPEVYIIFLPAAGMVSTILPVLARREILGYSAIVISIVALAFLSFGLWVHHMFT
VGIPHLALAFFSSASTAVAVPTAVQIFAWIGTLAAGRPQLKLPMLYLLGFFSVFVVGGLTGVMLAIVPFNWQVHDTHFVV
AHLHYVLVGGFVFPMLAAAYYWLPHITGRVPRHSLGVPAFWLIIIGFNVTFLVMHLTGLLGMPRRIHGYGAETGWEWPNL
ISSAGSFVMAIGFALFTVDVLMHWLHGQRSTRNPWGAGTLEWSIAVPPTNYAFASLPDVATRTPLQQRPDLGNHLARGGG
YLGFVRHGWLETLGVDVMSGRVEQIVRLPNRTLLPLFTALVTGVFFVAVLFKLYVVALLALPAIVAMLLAWTPVSGERRD
RGALPIGHGAAAVLHSEASSPPSLWALGLTLAADATAFASLAFGILFLWVVAPNWPPPAMIAFAPWGISLSTAGLLLGFI
AGRLATARRVIGSGRRREAALAVAVLGQIVALFGIADVILAVPPPTQHAYAAATTIILIYAGLHAALAAVFAGFGIWRSR
TGYVSQTRTVDLRIGALWSDATAAIGIATLLIVYGLPRVMG
>Mature_840_residues
TNQRPDASAAAASPIRLHKQLEAVWGTPGGWGRLAAVNHTIVGRRFIATAFVFFGIGGILAMLIRAQLATPRSAFLQPEI
YNQVFTMHGTVMMFLFAIPMFEGFAIYLLPKILGARDMAFPRLGAYGYWCYLFGGSMLLIAMAVGLAPNGGWFMYTPLSS
RVYTPGINSDIWLIGITFVEISALSAAVEIIATILKMRAPGMSLDKMPLLAWYLLVTAFMMLFGFPPLILGSILLEVERA
FDLPFFDPTRGGDALLWQHLFWLFGHPEVYIIFLPAAGMVSTILPVLARREILGYSAIVISIVALAFLSFGLWVHHMFTV
GIPHLALAFFSSASTAVAVPTAVQIFAWIGTLAAGRPQLKLPMLYLLGFFSVFVVGGLTGVMLAIVPFNWQVHDTHFVVA
HLHYVLVGGFVFPMLAAAYYWLPHITGRVPRHSLGVPAFWLIIIGFNVTFLVMHLTGLLGMPRRIHGYGAETGWEWPNLI
SSAGSFVMAIGFALFTVDVLMHWLHGQRSTRNPWGAGTLEWSIAVPPTNYAFASLPDVATRTPLQQRPDLGNHLARGGGY
LGFVRHGWLETLGVDVMSGRVEQIVRLPNRTLLPLFTALVTGVFFVAVLFKLYVVALLALPAIVAMLLAWTPVSGERRDR
GALPIGHGAAAVLHSEASSPPSLWALGLTLAADATAFASLAFGILFLWVVAPNWPPPAMIAFAPWGISLSTAGLLLGFIA
GRLATARRVIGSGRRREAALAVAVLGQIVALFGIADVILAVPPPTQHAYAAATTIILIYAGLHAALAAVFAGFGIWRSRT
GYVSQTRTVDLRIGALWSDATAAIGIATLLIVYGLPRVMG

Specific function: Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. Co I is the catalytic subunit of the enzyme. Electrons originating in cytochrome

COG id: COG0843

COG function: function code C; Heme/copper-type cytochrome/quinol oxidases, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the heme-copper respiratory oxidase family [H]

Homologues:

Organism=Homo sapiens, GI251831109, Length=509, Percent_Identity=36.1493123772102, Blast_Score=300, Evalue=3e-81,
Organism=Escherichia coli, GI1786634, Length=533, Percent_Identity=34.1463414634146, Blast_Score=319, Evalue=6e-88,
Organism=Saccharomyces cerevisiae, GI6226519, Length=469, Percent_Identity=37.5266524520256, Blast_Score=314, Evalue=5e-86,
Organism=Saccharomyces cerevisiae, GI6226524, Length=302, Percent_Identity=35.4304635761589, Blast_Score=201, Evalue=5e-52,
Organism=Saccharomyces cerevisiae, GI6226523, Length=226, Percent_Identity=35.3982300884956, Blast_Score=124, Evalue=6e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000883
- InterPro:   IPR014241 [H]

Pfam domain/function: PF00115 COX1 [H]

EC number: =1.9.3.1 [H]

Molecular weight: Translated: 90984; Mature: 90853

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: PS50855 COX1 ; PS00077 COX1_CUB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNQRPDASAAAASPIRLHKQLEAVWGTPGGWGRLAAVNHTIVGRRFIATAFVFFGIGGI
CCCCCCCCCHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LAMLIRAQLATPRSAFLQPEIYNQVFTMHGTVMMFLFAIPMFEGFAIYLLPKILGARDMA
HHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCC
FPRLGAYGYWCYLFGGSMLLIAMAVGLAPNGGWFMYTPLSSRVYTPGINSDIWLIGITFV
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEECCCCCCCEEEEEHHHH
EISALSAAVEIIATILKMRAPGMSLDKMPLLAWYLLVTAFMMLFGFPPLILGSILLEVER
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
AFDLPFFDPTRGGDALLWQHLFWLFGHPEVYIIFLPAAGMVSTILPVLARREILGYSAIV
HCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHH
ISIVALAFLSFGLWVHHMFTVGIPHLALAFFSSASTAVAVPTAVQIFAWIGTLAAGRPQL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHCCCCCC
KLPMLYLLGFFSVFVVGGLTGVMLAIVPFNWQVHDTHFVVAHLHYVLVGGFVFPMLAAAY
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
YWLPHITGRVPRHSLGVPAFWLIIIGFNVTFLVMHLTGLLGMPRRIHGYGAETGWEWPNL
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCHHH
ISSAGSFVMAIGFALFTVDVLMHWLHGQRSTRNPWGAGTLEWSIAVPPTNYAFASLPDVA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHH
TRTPLQQRPDLGNHLARGGGYLGFVRHGWLETLGVDVMSGRVEQIVRLPNRTLLPLFTAL
HCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
VTGVFFVAVLFKLYVVALLALPAIVAMLLAWTPVSGERRDRGALPIGHGAAAVLHSEASS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC
PPSLWALGLTLAADATAFASLAFGILFLWVVAPNWPPPAMIAFAPWGISLSTAGLLLGFI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHH
AGRLATARRVIGSGRRREAALAVAVLGQIVALFGIADVILAVPPPTQHAYAAATTIILIY
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
AGLHAALAAVFAGFGIWRSRTGYVSQTRTVDLRIGALWSDATAAIGIATLLIVYGLPRVM
HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHCCHHHC
G
C
>Mature Secondary Structure 
TNQRPDASAAAASPIRLHKQLEAVWGTPGGWGRLAAVNHTIVGRRFIATAFVFFGIGGI
CCCCCCCCHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LAMLIRAQLATPRSAFLQPEIYNQVFTMHGTVMMFLFAIPMFEGFAIYLLPKILGARDMA
HHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCC
FPRLGAYGYWCYLFGGSMLLIAMAVGLAPNGGWFMYTPLSSRVYTPGINSDIWLIGITFV
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEECCCCCCCEEEEEHHHH
EISALSAAVEIIATILKMRAPGMSLDKMPLLAWYLLVTAFMMLFGFPPLILGSILLEVER
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
AFDLPFFDPTRGGDALLWQHLFWLFGHPEVYIIFLPAAGMVSTILPVLARREILGYSAIV
HCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHH
ISIVALAFLSFGLWVHHMFTVGIPHLALAFFSSASTAVAVPTAVQIFAWIGTLAAGRPQL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHCCCCCC
KLPMLYLLGFFSVFVVGGLTGVMLAIVPFNWQVHDTHFVVAHLHYVLVGGFVFPMLAAAY
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
YWLPHITGRVPRHSLGVPAFWLIIIGFNVTFLVMHLTGLLGMPRRIHGYGAETGWEWPNL
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCHHH
ISSAGSFVMAIGFALFTVDVLMHWLHGQRSTRNPWGAGTLEWSIAVPPTNYAFASLPDVA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHH
TRTPLQQRPDLGNHLARGGGYLGFVRHGWLETLGVDVMSGRVEQIVRLPNRTLLPLFTAL
HCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
VTGVFFVAVLFKLYVVALLALPAIVAMLLAWTPVSGERRDRGALPIGHGAAAVLHSEASS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC
PPSLWALGLTLAADATAFASLAFGILFLWVVAPNWPPPAMIAFAPWGISLSTAGLLLGFI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHH
AGRLATARRVIGSGRRREAALAVAVLGQIVALFGIADVILAVPPPTQHAYAAATTIILIY
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
AGLHAALAAVFAGFGIWRSRTGYVSQTRTVDLRIGALWSDATAAIGIATLLIVYGLPRVM
HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHCCHHHC
G
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1847686; 9384377 [H]