| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is 86747244
Identifier: 86747244
GI number: 86747244
Start: 127873
End: 129246
Strand: Reverse
Name: 86747244
Synonym: RPB_0117
Alternate gene names: NA
Gene position: 129246-127873 (Counterclockwise)
Preceding gene: 86747246
Following gene: 86747243
Centisome position: 2.42
GC content: 70.31
Gene sequence:
>1374_bases GTGCACAGCTCCAGGCGCAGCATCTTGAAGGGACTCGGGGCGCTGCCCTTGGTGTTCGGCGGGCCGAGTTTGCGCGCCTT TGCGCAGGGGCCGGTCGCCGCGTCGCCCGAGACCCCGGTTCCGCCGATCCTGTTCGTGCACGGCAATGGCGATCATGCGG CGCTGTGGATCACGCAGATCTGGCGGATGGAATCCAACGGCATCGCAAGGCTACGGCTGGCGGCACTGAACTTCACCGAT CCGCTGGCGCGCACCGACGACGGCGTGGCGCAGCCCGACCGGTCCTCGACCGAGGACCAACGCCGCGAGCTCGGCGTCGC GATCGCCGAGCTGAAGCGTCGCACCGGCGCCGCCAAGGTCGCCCTGGTGGCGAGTTCGCGTGGCGGCAACGCGGTGCGCA ACTACATCAAGGTCGGCGGCGCCGCCGATGTCTCGCACGCGGTGCTGTGCGGCACGCCCAATCACGGCGTCTATGCCTGG GATGCGGGCCTCGGCAACGAGTTCAACGGCAAGGGGCCGTTCCTGCGTGGACTCAACGAGGGCGAGTCGGAAGTGACGCC GGGCGTGGCGTTCCTGACGCTGCGCAGCGACGGTCTGGACAAATACGCGCAGGCCGACGGCCGCTTCCTCGGCAAGCCGG GCACGCCGACCGGCGTGACGGCCGAAGGTCCCGAACTGCGTGGCGCGACCAATCTGGCGCTCAGCGCGCTCGACCATCGC GAAGTCGCTTTTCATCCGCGCGCCTTCCGCGAGATCTACAAATTCATCGCCGGCCGCGAGCCGGATCTGATCGCGATCGC GCCGGAACGGACGGTGCAGCTCAGCGGGCTGGTCACCGCTACGCCGGGCGGCGTGCCGACCAATCGCCCGGTTGCGGGCG CCGGCGTCGAAGTGTTTCGCGTCGCGCCCGATAGCGGCGAGCGCATCGGCGCGGCGCTGTACAGCGGCAAGACCGGCCCC GACGGCCGCTGGGGCCCCGTCGATACGCAGCCGCCCTGGCCGCTGGAATTCGTGCTCAGCCAGCCCGGCGAGATGATCAC CCATATCTATCGCTCGCCGTTTCCGCGCTCCTCCGATGTCGTGCATCTGCGCGCGGCGCGGCCCGCCGCCAAGCCGGAGG CCGAGACCGGCGCGGTGGTGATGCTGTCGAGGCCGCGCGGCTATTTCGGCCTGCCGCGCGACATCGTGCTGCTCGACGGC CAACAGCCAGCCGACGTCAAGCCGGGCGTGCCGACCGATGCGCTGACCACGGCGAAGCTGCCGGCGTCCGAGGTCGGACG CGCGGTGGCTGGCCATTTCAACGAGGAACGCATCGTGGCGCGGGCGTGGCCGCTGGCGGAGAACCGCGTCATCGTGGCGG AACTGACCTCTTAG
Upstream 100 bases:
>100_bases GCAGTGATGCCTGCGAACCTCCGGGCCTGTCCAGTGCCAACCGCCCCTTGAACGGGCCCAAGCGCCTGCTAGGGTTTGAA AAAATCAGGGAGAAACCAAC
Downstream 100 bases:
>100_bases GCAGGCCTTCCCGGCGCCCGGTTTGCTTCCTAGCTTGAGAGGTGAGGAAACCGAGACGAGGAGAGCCCTGTGAGCATCGC CGAAGTCTACGCTGTCGCTG
Product: twin-arginine translocation pathway signal
Products: NA
Alternate protein names: Hydrolase
Number of amino acids: Translated: 457; Mature: 457
Protein sequence:
>457_residues MHSSRRSILKGLGALPLVFGGPSLRAFAQGPVAASPETPVPPILFVHGNGDHAALWITQIWRMESNGIARLRLAALNFTD PLARTDDGVAQPDRSSTEDQRRELGVAIAELKRRTGAAKVALVASSRGGNAVRNYIKVGGAADVSHAVLCGTPNHGVYAW DAGLGNEFNGKGPFLRGLNEGESEVTPGVAFLTLRSDGLDKYAQADGRFLGKPGTPTGVTAEGPELRGATNLALSALDHR EVAFHPRAFREIYKFIAGREPDLIAIAPERTVQLSGLVTATPGGVPTNRPVAGAGVEVFRVAPDSGERIGAALYSGKTGP DGRWGPVDTQPPWPLEFVLSQPGEMITHIYRSPFPRSSDVVHLRAARPAAKPEAETGAVVMLSRPRGYFGLPRDIVLLDG QQPADVKPGVPTDALTTAKLPASEVGRAVAGHFNEERIVARAWPLAENRVIVAELTS
Sequences:
>Translated_457_residues MHSSRRSILKGLGALPLVFGGPSLRAFAQGPVAASPETPVPPILFVHGNGDHAALWITQIWRMESNGIARLRLAALNFTD PLARTDDGVAQPDRSSTEDQRRELGVAIAELKRRTGAAKVALVASSRGGNAVRNYIKVGGAADVSHAVLCGTPNHGVYAW DAGLGNEFNGKGPFLRGLNEGESEVTPGVAFLTLRSDGLDKYAQADGRFLGKPGTPTGVTAEGPELRGATNLALSALDHR EVAFHPRAFREIYKFIAGREPDLIAIAPERTVQLSGLVTATPGGVPTNRPVAGAGVEVFRVAPDSGERIGAALYSGKTGP DGRWGPVDTQPPWPLEFVLSQPGEMITHIYRSPFPRSSDVVHLRAARPAAKPEAETGAVVMLSRPRGYFGLPRDIVLLDG QQPADVKPGVPTDALTTAKLPASEVGRAVAGHFNEERIVARAWPLAENRVIVAELTS >Mature_457_residues MHSSRRSILKGLGALPLVFGGPSLRAFAQGPVAASPETPVPPILFVHGNGDHAALWITQIWRMESNGIARLRLAALNFTD PLARTDDGVAQPDRSSTEDQRRELGVAIAELKRRTGAAKVALVASSRGGNAVRNYIKVGGAADVSHAVLCGTPNHGVYAW DAGLGNEFNGKGPFLRGLNEGESEVTPGVAFLTLRSDGLDKYAQADGRFLGKPGTPTGVTAEGPELRGATNLALSALDHR EVAFHPRAFREIYKFIAGREPDLIAIAPERTVQLSGLVTATPGGVPTNRPVAGAGVEVFRVAPDSGERIGAALYSGKTGP DGRWGPVDTQPPWPLEFVLSQPGEMITHIYRSPFPRSSDVVHLRAARPAAKPEAETGAVVMLSRPRGYFGLPRDIVLLDG QQPADVKPGVPTDALTTAKLPASEVGRAVAGHFNEERIVARAWPLAENRVIVAELTS
Specific function: Unknown
COG id: COG1075
COG function: function code R; Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48411; Mature: 48411
Theoretical pI: Translated: 9.29; Mature: 9.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHSSRRSILKGLGALPLVFGGPSLRAFAQGPVAASPETPVPPILFVHGNGDHAALWITQI CCCHHHHHHHHCCCCEEEECCCCCHHHCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEEH WRMESNGIARLRLAALNFTDPLARTDDGVAQPDRSSTEDQRRELGVAIAELKRRTGAAKV EEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEE ALVASSRGGNAVRNYIKVGGAADVSHAVLCGTPNHGVYAWDAGLGNEFNGKGPFLRGLNE EEEEECCCCHHHHHHHHCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCEECCCCC GESEVTPGVAFLTLRSDGLDKYAQADGRFLGKPGTPTGVTAEGPELRGATNLALSALDHR CCCCCCCCEEEEEEECCCCHHHHHCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCC EVAFHPRAFREIYKFIAGREPDLIAIAPERTVQLSGLVTATPGGVPTNRPVAGAGVEVFR CEEECCHHHHHHHHHHCCCCCCEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCEEEEE VAPDSGERIGAALYSGKTGPDGRWGPVDTQPPWPLEFVLSQPGEMITHIYRSPFPRSSDV ECCCCCCHHHHHEECCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHCCCCCCCCE VHLRAARPAAKPEAETGAVVMLSRPRGYFGLPRDIVLLDGQQPADVKPGVPTDALTTAKL EEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCC PASEVGRAVAGHFNEERIVARAWPLAENRVIVAELTS CHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEECC >Mature Secondary Structure MHSSRRSILKGLGALPLVFGGPSLRAFAQGPVAASPETPVPPILFVHGNGDHAALWITQI CCCHHHHHHHHCCCCEEEECCCCCHHHCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEEH WRMESNGIARLRLAALNFTDPLARTDDGVAQPDRSSTEDQRRELGVAIAELKRRTGAAKV EEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEE ALVASSRGGNAVRNYIKVGGAADVSHAVLCGTPNHGVYAWDAGLGNEFNGKGPFLRGLNE EEEEECCCCHHHHHHHHCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCEECCCCC GESEVTPGVAFLTLRSDGLDKYAQADGRFLGKPGTPTGVTAEGPELRGATNLALSALDHR CCCCCCCCEEEEEEECCCCHHHHHCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCC EVAFHPRAFREIYKFIAGREPDLIAIAPERTVQLSGLVTATPGGVPTNRPVAGAGVEVFR CEEECCHHHHHHHHHHCCCCCCEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCEEEEE VAPDSGERIGAALYSGKTGPDGRWGPVDTQPPWPLEFVLSQPGEMITHIYRSPFPRSSDV ECCCCCCHHHHHEECCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHCCCCCCCCE VHLRAARPAAKPEAETGAVVMLSRPRGYFGLPRDIVLLDGQQPADVKPGVPTDALTTAKL EEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCC PASEVGRAVAGHFNEERIVARAWPLAENRVIVAELTS CHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA