| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is atoS [C]
Identifier: 86747162
GI number: 86747162
Start: 34035
End: 36800
Strand: Reverse
Name: atoS [C]
Synonym: RPB_0035
Alternate gene names: 86747162
Gene position: 36800-34035 (Counterclockwise)
Preceding gene: 86747163
Following gene: 86747158
Centisome position: 0.69
GC content: 69.41
Gene sequence:
>2766_bases ATGCGGCTGTCGGTGCGTCTGACGTTGGCGATGACGGCACTTGTGCTCTGTGCGGTGGCGGCGGTCGGCGTTCTGGCCTA CTACAATATCGGTCGCGCCGTGGTGCCGGCCGAACTCACGCGTCTCGCCGGTCAGGCTAAGGCGCGGCTGGGCGCGTTCG ATTCGATCCTCCGGGTGCTGCACAACGAGATTCTCGCCGCGCGGACGCTGCCGGGGCATCAGGGTATCGTTCGGGCCGTC CTCAATGGCGGCGTCGATCCGCAGGATCACTTCACTTCGGCGAAGTGGCTCAGCCATCTCGGCGACGTCTATGCCGGCCA GATGAGCGTCAAGCCGAGTATCGTCCGGTTCAGCCTGATCGGCGTCGCCGATGGCGGACGCGAATTGCTCAGCGTCGACC GCGCCGGACCGGACGGCGACATTCGCGTCGTGCCGGCCGACGAACTCGAGCGCGTCGGCGATGATGAACTGTTCGAGCGG ACGCTGGCGCTGCCGCCCGAGCAGGATGTCTACGCTTCGCCGATCCGCGCCGGCCCGGGCCGCCACGGTGACACCGCGCC GGTGCCGATGATCTCGATTTCGGCGTTGCTGCGGGCGCCGTCGGGCGCGCCGTTCGGCGTGCTCGTGCTCGACTTCGACT TGCGGCCGACCTTCGAGCGGATCCGCGCCGCGCTCGACGACACCACCAAGGTGTATTTCGTCGGTGCCGATGGGCGCTAT CTGCTGGATCTGCTCGACGGCCGGGTGACGCCGTCGGGCCAGACCGGCCGCTGGCAGGACGATTACCCCGATCTGGCGAA GGCGCTGGCCGACAAGCAAGGCACCGCCACGGTGCTCACCGCGCCCGACGGCAAGCGGGTCGGAGCGGCGATCGTGACCG CGCCGCTGGTCGGCGGCCTGCGCGTCGGCGTGATCGAGACCCAGGATTTCAGGAAGATCATCGCGCCGGCAACGGCGCTG GAGAACACCAGCATCACGGTCGCATTGGTTGCCGCTCTGGTGGCCGTGCTGCTGTCGGCGCTGCTGTCGCGGTCGCTCGC CAGGCCCGTGGCGCAGATCACCGCCGCGGTCGCCGGTTTCACCCGGAGCGGACGGCTCGCCTTGCCGACCGGGCTGAGCG GCGAACCCAAGATCCTGGCCGCCGCTTTCGCCCAGATGGTCGAGGAGATCGACAAGGCGACCGCGGCGCTGCGCGCCAAG TCGGAAGTGCTCGACAAGACCATCGCCAGCATGGCCGACGCCGTGCTGGTGATCGACGCCGAGGGGCGCCGGGTGTTCGC CAATCCGCCCGCCAACGCGATCTTCGGTGATTTCCGGGACATCGGATCGGAGACGTGGAGACGCGAGTATCAGCGCTTCC GGGCCGACGGCGTGACACCGATGGCGGAGACGGAATGCCCCGCGCGCCGCGCCTCCCAGGGCGAGGGGTTCGACAATGTC GAGATCGGCATCAGGCGCGACGGCGGGCCGCTGCTGCAACTTGCCGCCAGCGCGCGCACGATGCAGAAGGCCGATGGGAG TTTCGACGGCGCCGTGATCGTCTATCGCAACGTCACCGCGCTGAAGGAGACCGAGCGGCAACTGCGCCAGGCACAGAAGA TGCAGGCGATCGGCCAGCTCACCGGCGGCGTCGCGCACGATCTCAACAACATCCTCACGGTGCTGACCGGCGGGATCGAG ATCCTCGCCGAAGGCGTCAGCGACCGCCCGGCGCTCAGGGACGTGGCGCTGATGGTCGATCAGGCGGTGACCCGCGCCAG CGACCTGACCAACGGGCTGCTGTCGTTCGCGCGCAAGCAGCCGCTGCAGCCGCGCAGCATCGACGTCAACGCACTGATGC AGGAAACCGCGCGGCTGCTGCGCTCGACGCTCGGCGGCGACATCGAGGTCGAATTCGAGCCCGCGCCCGGCCTGCGCCCG GCGCTGGCCGACTCGTCGCAGCTCTCCAGCGCCCTGATCAATCTGGCGATCAACGCTCGCGACGCGATGCCGCGCGGCGG CACATTGCGGCTCGCGGCCGGCAACGCCGATCTCGACCAGCGCTACGCCGATCAGCACGACGAAGTCGTCGCCGGGCGCT ACGTCGTGCTGGCGGTGACCGACACCGGCATCGGCATTCCGGCCGCGATCCGCGACCGGGTGTTCGAGCCGTTCTTCACG ACGAAGGCGGTCGGCGAAGGCACCGGGCTCGGGCTCAGCATGGTGTACGGCTTCGTCAAGCAGTCCAATGGCCACATCGA GATCAGCAGCAACGAGGGCGCAGGCACCACGGTCCGGCTGTATCTGCCCTGCGCCGCGGCGCAGGACGATGCCGCCGATG CCGACGCTCCGCGGCAGGCGCAAGGCGGGCGCGAGACCATTCTGGTGGTCGAGGACGATGTGCTGGTGCGCAGCTATGTG ATGACCGATCTGGCCGGGCTCGGCTACACCGCCCATGGCGCCGCCACCGCCGCGGAGGCGATGGTGCTGGTGTACGACGA ACTCGAATTCGATCTGCTGTTCACCGACGTGATGCTGTCGGGCGGCATCGACGGCCGGCAGCTCGCCGATGCGCTGCGCA AACACCGTCCCGGCCTCAAGGTGCTGTTCACCTCCGGCTACAGCGGCGGCGCCTCGCGGCCGCAGGCCGACCGCACGGAC GGATCCCTGATGCTGGCGAAGCCCTACCGCCGCGCCGAACTGGCGCGGATGCTGCGGCTCGCGCTCGACGGCGAGGCCGC ATCCGCGCCGGCGAACGACGGCGACGTCCGCTTGCGCGGCACGTAG
Upstream 100 bases:
>100_bases CTAGACCATCGGCGATTCCGGCTCGATTCGGTGGCGCGCGTTGCGTCCATCGTATAGCGTGCCGGCGCCGATTGCGATCA ATCGGCGGGGGAAGCGGCGC
Downstream 100 bases:
>100_bases GGCATCGCGTCAGGCCCGCGCCGGCGCGAAGCGGTGGCTCAGGCGGAAGCCGTCGCGGATGTTGAGGCCGAGCAGCGCCA GGTTGATCGCGCCGGCGATG
Product: multi-sensor hybrid histidine kinase
Products: NA
Alternate protein names: Blue-light-activated histidine kinase; Response regulator [H]
Number of amino acids: Translated: 921; Mature: 921
Protein sequence:
>921_residues MRLSVRLTLAMTALVLCAVAAVGVLAYYNIGRAVVPAELTRLAGQAKARLGAFDSILRVLHNEILAARTLPGHQGIVRAV LNGGVDPQDHFTSAKWLSHLGDVYAGQMSVKPSIVRFSLIGVADGGRELLSVDRAGPDGDIRVVPADELERVGDDELFER TLALPPEQDVYASPIRAGPGRHGDTAPVPMISISALLRAPSGAPFGVLVLDFDLRPTFERIRAALDDTTKVYFVGADGRY LLDLLDGRVTPSGQTGRWQDDYPDLAKALADKQGTATVLTAPDGKRVGAAIVTAPLVGGLRVGVIETQDFRKIIAPATAL ENTSITVALVAALVAVLLSALLSRSLARPVAQITAAVAGFTRSGRLALPTGLSGEPKILAAAFAQMVEEIDKATAALRAK SEVLDKTIASMADAVLVIDAEGRRVFANPPANAIFGDFRDIGSETWRREYQRFRADGVTPMAETECPARRASQGEGFDNV EIGIRRDGGPLLQLAASARTMQKADGSFDGAVIVYRNVTALKETERQLRQAQKMQAIGQLTGGVAHDLNNILTVLTGGIE ILAEGVSDRPALRDVALMVDQAVTRASDLTNGLLSFARKQPLQPRSIDVNALMQETARLLRSTLGGDIEVEFEPAPGLRP ALADSSQLSSALINLAINARDAMPRGGTLRLAAGNADLDQRYADQHDEVVAGRYVVLAVTDTGIGIPAAIRDRVFEPFFT TKAVGEGTGLGLSMVYGFVKQSNGHIEISSNEGAGTTVRLYLPCAAAQDDAADADAPRQAQGGRETILVVEDDVLVRSYV MTDLAGLGYTAHGAATAAEAMVLVYDELEFDLLFTDVMLSGGIDGRQLADALRKHRPGLKVLFTSGYSGGASRPQADRTD GSLMLAKPYRRAELARMLRLALDGEAASAPANDGDVRLRGT
Sequences:
>Translated_921_residues MRLSVRLTLAMTALVLCAVAAVGVLAYYNIGRAVVPAELTRLAGQAKARLGAFDSILRVLHNEILAARTLPGHQGIVRAV LNGGVDPQDHFTSAKWLSHLGDVYAGQMSVKPSIVRFSLIGVADGGRELLSVDRAGPDGDIRVVPADELERVGDDELFER TLALPPEQDVYASPIRAGPGRHGDTAPVPMISISALLRAPSGAPFGVLVLDFDLRPTFERIRAALDDTTKVYFVGADGRY LLDLLDGRVTPSGQTGRWQDDYPDLAKALADKQGTATVLTAPDGKRVGAAIVTAPLVGGLRVGVIETQDFRKIIAPATAL ENTSITVALVAALVAVLLSALLSRSLARPVAQITAAVAGFTRSGRLALPTGLSGEPKILAAAFAQMVEEIDKATAALRAK SEVLDKTIASMADAVLVIDAEGRRVFANPPANAIFGDFRDIGSETWRREYQRFRADGVTPMAETECPARRASQGEGFDNV EIGIRRDGGPLLQLAASARTMQKADGSFDGAVIVYRNVTALKETERQLRQAQKMQAIGQLTGGVAHDLNNILTVLTGGIE ILAEGVSDRPALRDVALMVDQAVTRASDLTNGLLSFARKQPLQPRSIDVNALMQETARLLRSTLGGDIEVEFEPAPGLRP ALADSSQLSSALINLAINARDAMPRGGTLRLAAGNADLDQRYADQHDEVVAGRYVVLAVTDTGIGIPAAIRDRVFEPFFT TKAVGEGTGLGLSMVYGFVKQSNGHIEISSNEGAGTTVRLYLPCAAAQDDAADADAPRQAQGGRETILVVEDDVLVRSYV MTDLAGLGYTAHGAATAAEAMVLVYDELEFDLLFTDVMLSGGIDGRQLADALRKHRPGLKVLFTSGYSGGASRPQADRTD GSLMLAKPYRRAELARMLRLALDGEAASAPANDGDVRLRGT >Mature_921_residues MRLSVRLTLAMTALVLCAVAAVGVLAYYNIGRAVVPAELTRLAGQAKARLGAFDSILRVLHNEILAARTLPGHQGIVRAV LNGGVDPQDHFTSAKWLSHLGDVYAGQMSVKPSIVRFSLIGVADGGRELLSVDRAGPDGDIRVVPADELERVGDDELFER TLALPPEQDVYASPIRAGPGRHGDTAPVPMISISALLRAPSGAPFGVLVLDFDLRPTFERIRAALDDTTKVYFVGADGRY LLDLLDGRVTPSGQTGRWQDDYPDLAKALADKQGTATVLTAPDGKRVGAAIVTAPLVGGLRVGVIETQDFRKIIAPATAL ENTSITVALVAALVAVLLSALLSRSLARPVAQITAAVAGFTRSGRLALPTGLSGEPKILAAAFAQMVEEIDKATAALRAK SEVLDKTIASMADAVLVIDAEGRRVFANPPANAIFGDFRDIGSETWRREYQRFRADGVTPMAETECPARRASQGEGFDNV EIGIRRDGGPLLQLAASARTMQKADGSFDGAVIVYRNVTALKETERQLRQAQKMQAIGQLTGGVAHDLNNILTVLTGGIE ILAEGVSDRPALRDVALMVDQAVTRASDLTNGLLSFARKQPLQPRSIDVNALMQETARLLRSTLGGDIEVEFEPAPGLRP ALADSSQLSSALINLAINARDAMPRGGTLRLAAGNADLDQRYADQHDEVVAGRYVVLAVTDTGIGIPAAIRDRVFEPFFT TKAVGEGTGLGLSMVYGFVKQSNGHIEISSNEGAGTTVRLYLPCAAAQDDAADADAPRQAQGGRETILVVEDDVLVRSYV MTDLAGLGYTAHGAATAAEAMVLVYDELEFDLLFTDVMLSGGIDGRQLADALRKHRPGLKVLFTSGYSGGASRPQADRTD GSLMLAKPYRRAELARMLRLALDGEAASAPANDGDVRLRGT
Specific function: Photosensitive kinase and response regulator that is involved in increased bacterial virulence upon exposure to light [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=431, Percent_Identity=28.0742459396752, Blast_Score=147, Evalue=2e-36, Organism=Escherichia coli, GI1790436, Length=245, Percent_Identity=30.2040816326531, Blast_Score=115, Evalue=1e-26, Organism=Escherichia coli, GI1790300, Length=360, Percent_Identity=25.5555555555556, Blast_Score=77, Evalue=4e-15, Organism=Escherichia coli, GI1790861, Length=234, Percent_Identity=29.4871794871795, Blast_Score=65, Evalue=2e-11, Organism=Escherichia coli, GI1786837, Length=139, Percent_Identity=30.2158273381295, Blast_Score=63, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011006 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR001789 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS; PF00072 Response_reg [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 97661; Mature: 97661
Theoretical pI: Translated: 5.35; Mature: 5.35
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLSVRLTLAMTALVLCAVAAVGVLAYYNIGRAVVPAELTRLAGQAKARLGAFDSILRVL CEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHH HNEILAARTLPGHQGIVRAVLNGGVDPQDHFTSAKWLSHLGDVYAGQMSVKPSIVRFSLI HHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE GVADGGRELLSVDRAGPDGDIRVVPADELERVGDDELFERTLALPPEQDVYASPIRAGPG EECCCCHHHHEECCCCCCCCEEEECHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCC RHGDTAPVPMISISALLRAPSGAPFGVLVLDFDLRPTFERIRAALDDTTKVYFVGADGRY CCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHCCCCEEEEEECCCHH LLDLLDGRVTPSGQTGRWQDDYPDLAKALADKQGTATVLTAPDGKRVGAAIVTAPLVGGL HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCE RVGVIETQDFRKIIAPATALENTSITVALVAALVAVLLSALLSRSLARPVAQITAAVAGF EEEEEECHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC TRSGRLALPTGLSGEPKILAAAFAQMVEEIDKATAALRAKSEVLDKTIASMADAVLVIDA CCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEC EGRRVFANPPANAIFGDFRDIGSETWRREYQRFRADGVTPMAETECPARRASQGEGFDNV CCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCE EIGIRRDGGPLLQLAASARTMQKADGSFDGAVIVYRNVTALKETERQLRQAQKMQAIGQL EEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHH TGGVAHDLNNILTVLTGGIEILAEGVSDRPALRDVALMVDQAVTRASDLTNGLLSFARKQ HCHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC PLQPRSIDVNALMQETARLLRSTLGGDIEVEFEPAPGLRPALADSSQLSSALINLAINAR CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHEEECC DAMPRGGTLRLAAGNADLDQRYADQHDEVVAGRYVVLAVTDTGIGIPAAIRDRVFEPFFT CCCCCCCEEEEEECCCCHHHHHHCCCCCEEECCEEEEEEECCCCCCCHHHHHHHCCCHHH TKAVGEGTGLGLSMVYGFVKQSNGHIEISSNEGAGTTVRLYLPCAAAQDDAADADAPRQA HHCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCC QGGRETILVVEDDVLVRSYVMTDLAGLGYTAHGAATAAEAMVLVYDELEFDLLFTDVMLS CCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHEEEEEEECCCHHHHHHHHHHH GGIDGRQLADALRKHRPGLKVLFTSGYSGGASRPQADRTDGSLMLAKPYRRAELARMLRL CCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHH ALDGEAASAPANDGDVRLRGT HHCCCCCCCCCCCCCEEEECC >Mature Secondary Structure MRLSVRLTLAMTALVLCAVAAVGVLAYYNIGRAVVPAELTRLAGQAKARLGAFDSILRVL CEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHH HNEILAARTLPGHQGIVRAVLNGGVDPQDHFTSAKWLSHLGDVYAGQMSVKPSIVRFSLI HHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE GVADGGRELLSVDRAGPDGDIRVVPADELERVGDDELFERTLALPPEQDVYASPIRAGPG EECCCCHHHHEECCCCCCCCEEEECHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCC RHGDTAPVPMISISALLRAPSGAPFGVLVLDFDLRPTFERIRAALDDTTKVYFVGADGRY CCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHCCCCEEEEEECCCHH LLDLLDGRVTPSGQTGRWQDDYPDLAKALADKQGTATVLTAPDGKRVGAAIVTAPLVGGL HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCE RVGVIETQDFRKIIAPATALENTSITVALVAALVAVLLSALLSRSLARPVAQITAAVAGF EEEEEECHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC TRSGRLALPTGLSGEPKILAAAFAQMVEEIDKATAALRAKSEVLDKTIASMADAVLVIDA CCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEC EGRRVFANPPANAIFGDFRDIGSETWRREYQRFRADGVTPMAETECPARRASQGEGFDNV CCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCE EIGIRRDGGPLLQLAASARTMQKADGSFDGAVIVYRNVTALKETERQLRQAQKMQAIGQL EEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHH TGGVAHDLNNILTVLTGGIEILAEGVSDRPALRDVALMVDQAVTRASDLTNGLLSFARKQ HCHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC PLQPRSIDVNALMQETARLLRSTLGGDIEVEFEPAPGLRPALADSSQLSSALINLAINAR CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHEEECC DAMPRGGTLRLAAGNADLDQRYADQHDEVVAGRYVVLAVTDTGIGIPAAIRDRVFEPFFT CCCCCCCEEEEEECCCCHHHHHHCCCCCEEECCEEEEEEECCCCCCCHHHHHHHCCCHHH TKAVGEGTGLGLSMVYGFVKQSNGHIEISSNEGAGTTVRLYLPCAAAQDDAADADAPRQA HHCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCC QGGRETILVVEDDVLVRSYVMTDLAGLGYTAHGAATAAEAMVLVYDELEFDLLFTDVMLS CCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHEEEEEEECCCHHHHHHHHHHH GGIDGRQLADALRKHRPGLKVLFTSGYSGGASRPQADRTDGSLMLAKPYRRAELARMLRL CCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHH ALDGEAASAPANDGDVRLRGT HHCCCCCCCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA