| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is yceF [H]
Identifier: 86608562
GI number: 86608562
Start: 1120530
End: 1121417
Strand: Direct
Name: yceF [H]
Synonym: CYB_1084
Alternate gene names: 86608562
Gene position: 1120530-1121417 (Clockwise)
Preceding gene: 86608561
Following gene: 86608564
Centisome position: 36.78
GC content: 57.55
Gene sequence:
>888_bases ATGGGAGCGACCTTGATCCTGGCGCAAGGGATGACTCAGTCCTTCACCTGGACAGATATTTTCTTGGTAGTGGCTTTGGT GTTTTTGGAGGCCGCCCTCTCTGCGGACAACGCCGTTGCCCTAGCAGCTCTGGTGAAGCATCTGCCCACCCCTCAGCAAC AAAATCGGGCCTTGCGCTGGGGCATCATCGGCGCTTACAGCTTTCGCATTGCCATTGTCTTCGCGGCAGTTTGGTTGGTG GAGTATCCGCCCGCCCAATTCTTGGGGGCCTGTTATCTGCTCTGGCTAGCCTGGCAGCACTTTCGGGGCGAGGAAGAAGG CCAAGAACAGGACATCACCCGCCACGCCAATTTTTGGCAGACCCTGGTGATGGTGGAACTGACGGATCTGGTTTTTTCTT TCGACAGCATCGCCGCTTCGGTGGGCGTCTCCCGCAAGGCTTGGGTAATCATCCTCGGCGGCATTCTCGGCATTACCCTG ATGCGCTACATGGCTTCTCTGTTTTTGCGTTGGTTGGACGAGTTCTCTCACCTGGAAGACGCCGCTTTTGCCATCATCGC CTTGGTGGGGAGCACCATGTTGTTGGAGGTGTTTTTCCCCCAAATCGAGCTCCCGGAGTGGGGGATGGTGGTGGCTGTGA TCCCCCTATTTGTCTGGGGTTTCTCGCGGCGCGTGAAACTCAATTCGGAGCAGGATGAACAGCCGGAGCTGGCTGACGGA GAGAAGAGGGAAGAGAAAAGAGCAGGGGTTACAGACGAGATGGAGATCGTCCCCTCCGGTTGGGTGACTGCCCTTGAGGA AGACCTCGCCCCTGAGCCCCAGAGCAGAGAGAATGGAGAGGAGAGGTACGGCTTGGGCCTATCGCCAGGGATCCCTGATC TGCCTTGA
Upstream 100 bases:
>100_bases GTTCCTACGCTGGTTAACTGCTGTGTTGGACTGACTGGGGCGGACAAAACGCGCGAATATGCTAATTGATGCAACACTTG TCAAAAATGCAACAGATGCG
Downstream 100 bases:
>100_bases TAGGGCTGTGGGCTGCTTCATTGCCTTGGCCCCTGCCGACTCCTAAACTAGCAGTGAAGCCGACTCAAGGAGGGAAGCAT CCTGAGCCCCCAGTTTTGCT
Product: TerC family membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 295; Mature: 294
Protein sequence:
>295_residues MGATLILAQGMTQSFTWTDIFLVVALVFLEAALSADNAVALAALVKHLPTPQQQNRALRWGIIGAYSFRIAIVFAAVWLV EYPPAQFLGACYLLWLAWQHFRGEEEGQEQDITRHANFWQTLVMVELTDLVFSFDSIAASVGVSRKAWVIILGGILGITL MRYMASLFLRWLDEFSHLEDAAFAIIALVGSTMLLEVFFPQIELPEWGMVVAVIPLFVWGFSRRVKLNSEQDEQPELADG EKREEKRAGVTDEMEIVPSGWVTALEEDLAPEPQSRENGEERYGLGLSPGIPDLP
Sequences:
>Translated_295_residues MGATLILAQGMTQSFTWTDIFLVVALVFLEAALSADNAVALAALVKHLPTPQQQNRALRWGIIGAYSFRIAIVFAAVWLV EYPPAQFLGACYLLWLAWQHFRGEEEGQEQDITRHANFWQTLVMVELTDLVFSFDSIAASVGVSRKAWVIILGGILGITL MRYMASLFLRWLDEFSHLEDAAFAIIALVGSTMLLEVFFPQIELPEWGMVVAVIPLFVWGFSRRVKLNSEQDEQPELADG EKREEKRAGVTDEMEIVPSGWVTALEEDLAPEPQSRENGEERYGLGLSPGIPDLP >Mature_294_residues GATLILAQGMTQSFTWTDIFLVVALVFLEAALSADNAVALAALVKHLPTPQQQNRALRWGIIGAYSFRIAIVFAAVWLVE YPPAQFLGACYLLWLAWQHFRGEEEGQEQDITRHANFWQTLVMVELTDLVFSFDSIAASVGVSRKAWVIILGGILGITLM RYMASLFLRWLDEFSHLEDAAFAIIALVGSTMLLEVFFPQIELPEWGMVVAVIPLFVWGFSRRVKLNSEQDEQPELADGE KREEKRAGVTDEMEIVPSGWVTALEEDLAPEPQSRENGEERYGLGLSPGIPDLP
Specific function: Unknown
COG id: COG0861
COG function: function code P; Membrane protein TerC, possibly involved in tellurium resistance
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the terC family [H]
Homologues:
Organism=Escherichia coli, GI1789197, Length=197, Percent_Identity=27.4111675126904, Blast_Score=69, Evalue=4e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022493 - InterPro: IPR005496 [H]
Pfam domain/function: PF03741 TerC [H]
EC number: NA
Molecular weight: Translated: 32970; Mature: 32839
Theoretical pI: Translated: 4.23; Mature: 4.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGATLILAQGMTQSFTWTDIFLVVALVFLEAALSADNAVALAALVKHLPTPQQQNRALRW CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHCCCEEH GIIGAYSFRIAIVFAAVWLVEYPPAQFLGACYLLWLAWQHFRGEEEGQEQDITRHANFWQ EEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH TLVMVELTDLVFSFDSIAASVGVSRKAWVIILGGILGITLMRYMASLFLRWLDEFSHLED HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAFAIIALVGSTMLLEVFFPQIELPEWGMVVAVIPLFVWGFSRRVKLNSEQDEQPELADG HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCC EKREEKRAGVTDEMEIVPSGWVTALEEDLAPEPQSRENGEERYGLGLSPGIPDLP HHHHHHHCCCCCCCEECCCHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCC >Mature Secondary Structure GATLILAQGMTQSFTWTDIFLVVALVFLEAALSADNAVALAALVKHLPTPQQQNRALRW CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHCCCEEH GIIGAYSFRIAIVFAAVWLVEYPPAQFLGACYLLWLAWQHFRGEEEGQEQDITRHANFWQ EEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH TLVMVELTDLVFSFDSIAASVGVSRKAWVIILGGILGITLMRYMASLFLRWLDEFSHLED HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAFAIIALVGSTMLLEVFFPQIELPEWGMVVAVIPLFVWGFSRRVKLNSEQDEQPELADG HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCC EKREEKRAGVTDEMEIVPSGWVTALEEDLAPEPQSRENGEERYGLGLSPGIPDLP HHHHHHHCCCCCCCEECCCHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9274031; 9384377 [H]