| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608560
Identifier: 86608560
GI number: 86608560
Start: 1118493
End: 1119389
Strand: Direct
Name: 86608560
Synonym: CYB_1082
Alternate gene names: NA
Gene position: 1118493-1119389 (Clockwise)
Preceding gene: 86608559
Following gene: 86608561
Centisome position: 36.71
GC content: 59.53
Gene sequence:
>897_bases ATGTTTAAAAACGTGTTAATTGCCACCGACCGCCGAGATGGCCTGCAGCGTTTTGGCAAGTGTCTAGAAGATCTGCACAG CAATGGCATCGAGCGCGTCACCTTCGTCCGCAGCGTAGATTGGCAAGAGGACGACATCGGCATTCCCGACGACATTACCC CCGAAGTCCAGGCAGAGCAGACCCAGTTGCAGAAGCTGCTGAACCCGATCCCAGCAGGGTTGGAAGTCGAGGCTCTGGTG CAGGTGGGCAGGCCAGCCGATCTAATCCTAAAAGGCATCCAAACCTATGGCTCCGATCTGCTGATTACAGGCATGGGTAC CCACAACCTGCTCGCCGAAAAATTGTTCGGCAGCACCACCATGACGCTGTTGCCGAAGCTGAAAATCCCCCTACTGGTGA TGCGCCCCCAGCTGCTGGCTACCTTTACCCTGGAGGAACTGCGCCTGCGCAGTCGCCACCTGTTTCGCTGCCTCTTGGTG CCCTTTGACTTTGAGCAGCCGCGTCAGCAGTTGCTGAACCATCTCGGCCACCTGCTGCCCGGTACTTCCCAGTGCCAGAC GCTTACCCTGCTCTACGTGGTGGATCCCAGCGCCCGCCGCAACCAAGGAACTCCGGTGGAGGTGCTCCAACGCAAAGCCG AGGCTGACCTGGCCCAGGTGCTTGAACCCCTGAGCGAGCAGGTGAAGCCCGTACAGCTGCGCACCCTGGTGCGGGTGGGA TCCCCTCTCAAAGAGATCCTGGCTACTGCTGCCGATGAAGACATGACGGCCATCGCCACTGCCTCCCCCCATGTGGGCAG CTTTTGGGAGTGGTCGGTTCGCAGCCTAACCGGCGAGATTTTGCGGCAAAGTTGGCATCCGGTGTTGTTTTTCCCGCGCG GGTCTTTGGCCCAGTAG
Upstream 100 bases:
>100_bases CTGCCTTGGGAACAACCCCGCAAGGTGTTAGCTTAGGATCGCTGCGGGCCAAAGCGTTGCTCTTGAGCCGGCTACCCTCT CTCCTAATGCTCAAAACGAT
Downstream 100 bases:
>100_bases ATCCAGGCAAGATCCAAGCCGAGTGTTGCAGATTAACTCATCCTCCATGACCCCCCCCTCTACGACAGCGCTGCAGGATC TGTTTCGGGCGGTGGCCCAA
Product: universal stress protein
Products: NA
Alternate protein names: UspA Domain-Containing Protein; Universal Stress Protein; Universal Stress Protein Family; Universal Stress Protein Family Protein
Number of amino acids: Translated: 298; Mature: 298
Protein sequence:
>298_residues MFKNVLIATDRRDGLQRFGKCLEDLHSNGIERVTFVRSVDWQEDDIGIPDDITPEVQAEQTQLQKLLNPIPAGLEVEALV QVGRPADLILKGIQTYGSDLLITGMGTHNLLAEKLFGSTTMTLLPKLKIPLLVMRPQLLATFTLEELRLRSRHLFRCLLV PFDFEQPRQQLLNHLGHLLPGTSQCQTLTLLYVVDPSARRNQGTPVEVLQRKAEADLAQVLEPLSEQVKPVQLRTLVRVG SPLKEILATAADEDMTAIATASPHVGSFWEWSVRSLTGEILRQSWHPVLFFPRGSLAQ
Sequences:
>Translated_298_residues MFKNVLIATDRRDGLQRFGKCLEDLHSNGIERVTFVRSVDWQEDDIGIPDDITPEVQAEQTQLQKLLNPIPAGLEVEALV QVGRPADLILKGIQTYGSDLLITGMGTHNLLAEKLFGSTTMTLLPKLKIPLLVMRPQLLATFTLEELRLRSRHLFRCLLV PFDFEQPRQQLLNHLGHLLPGTSQCQTLTLLYVVDPSARRNQGTPVEVLQRKAEADLAQVLEPLSEQVKPVQLRTLVRVG SPLKEILATAADEDMTAIATASPHVGSFWEWSVRSLTGEILRQSWHPVLFFPRGSLAQ >Mature_298_residues MFKNVLIATDRRDGLQRFGKCLEDLHSNGIERVTFVRSVDWQEDDIGIPDDITPEVQAEQTQLQKLLNPIPAGLEVEALV QVGRPADLILKGIQTYGSDLLITGMGTHNLLAEKLFGSTTMTLLPKLKIPLLVMRPQLLATFTLEELRLRSRHLFRCLLV PFDFEQPRQQLLNHLGHLLPGTSQCQTLTLLYVVDPSARRNQGTPVEVLQRKAEADLAQVLEPLSEQVKPVQLRTLVRVG SPLKEILATAADEDMTAIATASPHVGSFWEWSVRSLTGEILRQSWHPVLFFPRGSLAQ
Specific function: Unknown
COG id: COG0589
COG function: function code T; Universal stress protein UspA and related nucleotide-binding proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33372; Mature: 33372
Theoretical pI: Translated: 6.40; Mature: 6.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFKNVLIATDRRDGLQRFGKCLEDLHSNGIERVTFVRSVDWQEDDIGIPDDITPEVQAEQ CCCCEEEECCCHHHHHHHHHHHHHHHCCCCCHHHEEEECCCCCCCCCCCCCCCCCCHHHH TQLQKLLNPIPAGLEVEALVQVGRPADLILKGIQTYGSDLLITGMGTHNLLAEKLFGSTT HHHHHHHCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCHH MTLLPKLKIPLLVMRPQLLATFTLEELRLRSRHLFRCLLVPFDFEQPRQQLLNHLGHLLP HHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC GTSQCQTLTLLYVVDPSARRNQGTPVEVLQRKAEADLAQVLEPLSEQVKPVQLRTLVRVG CCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC SPLKEILATAADEDMTAIATASPHVGSFWEWSVRSLTGEILRQSWHPVLFFPRGSLAQ CHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC >Mature Secondary Structure MFKNVLIATDRRDGLQRFGKCLEDLHSNGIERVTFVRSVDWQEDDIGIPDDITPEVQAEQ CCCCEEEECCCHHHHHHHHHHHHHHHCCCCCHHHEEEECCCCCCCCCCCCCCCCCCHHHH TQLQKLLNPIPAGLEVEALVQVGRPADLILKGIQTYGSDLLITGMGTHNLLAEKLFGSTT HHHHHHHCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCHH MTLLPKLKIPLLVMRPQLLATFTLEELRLRSRHLFRCLLVPFDFEQPRQQLLNHLGHLLP HHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC GTSQCQTLTLLYVVDPSARRNQGTPVEVLQRKAEADLAQVLEPLSEQVKPVQLRTLVRVG CCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC SPLKEILATAADEDMTAIATASPHVGSFWEWSVRSLTGEILRQSWHPVLFFPRGSLAQ CHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA