| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608451
Identifier: 86608451
GI number: 86608451
Start: 1008126
End: 1008764
Strand: Direct
Name: 86608451
Synonym: CYB_0972
Alternate gene names: NA
Gene position: 1008126-1008764 (Clockwise)
Preceding gene: 86608450
Following gene: 86608453
Centisome position: 33.09
GC content: 61.35
Gene sequence:
>639_bases ATGCCAAAACTGGGGTGGAGTTGTAGGGGATCGGTTCTGCGGGGCACGATTAGCCTTGTGGCTATTGTGCTGGTGGGGCT GCTGGCCGGCTGCGGCCCTAGACCGCCAAAGCCGATTGTGCAGCAGGCCCTCGCCTATCAGATCGCTCATTTGTCCGGGC CGGTGGGATCCTTAGTGGGCAGCGACCGGTTGTCGGCACATCTGGAATTGCAGGATGTGAAAATCCGCCAGGATCGCCGT GAACCTTTGCTGTTAGTCTCAGGAGAAACCCTGGAAGGCCATCACCTCAGCGGCACCTACACCCTAATCGTGCATCCGCC GGGATCCCGCCGCCCCTATCGCCGCAAAGGGGATCCCTTCCAGATCACCCTGGCCCACCAAAAGGCACAAACTGTTGCTA CACAACGCTCGCCCGACCGCGTCAAAACCGTGCCCGAACGGTGGCTGCTGGCCTACAGCTCACCGGATTCCAAGACTTGG GAGGTCATCGACTTTCTGCCTCAGCCCGCACCGGCACCGGAGTTGCCTCCTGCTGGGCCAGAACCTACACTGCCGGCAAC TGCACCTGCTGCCGCCGACGTTGGCAGGACGGAGTCCGATGGAGCTCCCAGCCCTACCAATACTTCTACTCCCACCTGA
Upstream 100 bases:
>100_bases GTACCGGCCTTGTGGCTCTCACCCGCGAGTCCGGCGTGAATACGGAATACCTGAAGCAACACCCCACCTTAGTTACCGTC TGATGGCCTCAGGGGAAGCG
Downstream 100 bases:
>100_bases AGCAGAGTTATGGGGATGTCCCAGCTCACCGCAGCAGAGCTGCCCCCCAGCCAAATAGCCCATCCACCAACAGGGTATTC AGCACTGCTCCCGCAAATGC
Product: lipoprotein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 212; Mature: 211
Protein sequence:
>212_residues MPKLGWSCRGSVLRGTISLVAIVLVGLLAGCGPRPPKPIVQQALAYQIAHLSGPVGSLVGSDRLSAHLELQDVKIRQDRR EPLLLVSGETLEGHHLSGTYTLIVHPPGSRRPYRRKGDPFQITLAHQKAQTVATQRSPDRVKTVPERWLLAYSSPDSKTW EVIDFLPQPAPAPELPPAGPEPTLPATAPAAADVGRTESDGAPSPTNTSTPT
Sequences:
>Translated_212_residues MPKLGWSCRGSVLRGTISLVAIVLVGLLAGCGPRPPKPIVQQALAYQIAHLSGPVGSLVGSDRLSAHLELQDVKIRQDRR EPLLLVSGETLEGHHLSGTYTLIVHPPGSRRPYRRKGDPFQITLAHQKAQTVATQRSPDRVKTVPERWLLAYSSPDSKTW EVIDFLPQPAPAPELPPAGPEPTLPATAPAAADVGRTESDGAPSPTNTSTPT >Mature_211_residues PKLGWSCRGSVLRGTISLVAIVLVGLLAGCGPRPPKPIVQQALAYQIAHLSGPVGSLVGSDRLSAHLELQDVKIRQDRRE PLLLVSGETLEGHHLSGTYTLIVHPPGSRRPYRRKGDPFQITLAHQKAQTVATQRSPDRVKTVPERWLLAYSSPDSKTWE VIDFLPQPAPAPELPPAGPEPTLPATAPAAADVGRTESDGAPSPTNTSTPT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22666; Mature: 22535
Theoretical pI: Translated: 9.55; Mature: 9.55
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKLGWSCRGSVLRGTISLVAIVLVGLLAGCGPRPPKPIVQQALAYQIAHLSGPVGSLVG CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHC SDRLSAHLELQDVKIRQDRREPLLLVSGETLEGHHLSGTYTLIVHPPGSRRPYRRKGDPF CCCCEEEEEEEHHHCCCCCCCCEEEEECCCCCCEECCCEEEEEEECCCCCCCCCCCCCCE QITLAHQKAQTVATQRSPDRVKTVPERWLLAYSSPDSKTWEVIDFLPQPAPAPELPPAGP EEEEECHHHHHHHHCCCCHHHHHCCCCEEEEECCCCCCCCHHEECCCCCCCCCCCCCCCC EPTLPATAPAAADVGRTESDGAPSPTNTSTPT CCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure PKLGWSCRGSVLRGTISLVAIVLVGLLAGCGPRPPKPIVQQALAYQIAHLSGPVGSLVG CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHC SDRLSAHLELQDVKIRQDRREPLLLVSGETLEGHHLSGTYTLIVHPPGSRRPYRRKGDPF CCCCEEEEEEEHHHCCCCCCCCEEEEECCCCCCEECCCEEEEEEECCCCCCCCCCCCCCE QITLAHQKAQTVATQRSPDRVKTVPERWLLAYSSPDSKTWEVIDFLPQPAPAPELPPAGP EEEEECHHHHHHHHCCCCHHHHHCCCCEEEEECCCCCCCCHHEECCCCCCCCCCCCCCCC EPTLPATAPAAADVGRTESDGAPSPTNTSTPT CCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA