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The map label for this gene is ydcP [H]

Identifier: 86608449

GI number: 86608449

Start: 1004906

End: 1007419

Strand: Direct

Name: ydcP [H]

Synonym: CYB_0970

Alternate gene names: 86608449

Gene position: 1004906-1007419 (Clockwise)

Preceding gene: 86608448

Following gene: 86608450

Centisome position: 32.98

GC content: 60.18

Gene sequence:

>2514_bases
ATGAAAGCTGCTGGGATAGATTTCGCGGAAACGGATCACTTTGAGGCGCCGCCTCTGACCACCAAGTTGCCCCTGCTGCT
GGCCCCGGCGGGGGATTGGGAGTGTGCCAAGGCGGCAGTGGAAAACGGAGCCGATGCCATTTACTTTGGGCTGGAGCGCT
TCAACGCCCGGATGCGCGCCCGCAACTTTACGGAAGCGGATTTGCCGGAACTGATGGCCTGGCTGCACCGGCGGGGGGTA
CGGGGCTATGTTACTTTGAATACTCTGGTTTTTCCAAGGGAGCTGACGGAAGCCGAGGGATACATCCGCTCGATGATTGC
GGCGGGGGTGGATGCGGTGATTGTGCAGGATATTGGCATCGCCCGCCTGATCCGGCATCTTTCCCCCGATTTCCCCATCC
ATGCTTCCACGCAAATGACCATCACCAGTGGAGTGGGAGCGGAGTTTGCCGCTGAGCTGGGCTGTGAGGTGGTGGTGCTG
GCGCGGGAATGTTCCCTCCAGGAAATCGCCCAGATCCAGGCCTATCTGCAAGAGAAGGGATCCTCCCTATCTCTGGAGGT
CTTTGTGCATGGGGCGTTGTGCGTGGCCTACTCGGGGCAATGTCTGACCAGCGAGGCGCTGGGGGGGCGTTCGGCCAATC
GGGGGGAATGTGCCCAAGCCTGCCGCATGCCCTATGAGCTGGTGGTAGACGGGATCCGCCGCGACTTGGGGGAGAAGCGG
TATCTGCTCAGCCCTCAAGATTTGGCCGGGCTGGAGGTGCTACCGGAGCTGGTGAAGCTGGGGATCCGCTGTCTGAAAAT
TGAGGGCCGGCTGAAATCCCCAGAATATGTAGCCAATGTAACGCGGGTGTATCGGCAGGCCTTGGATGCGCTGGGGGTGG
GACAGCCGTGGCAGCCCTCGCAACAGGAACGCTACGAGCTGGAGATGAGCTTTTCTCGCGGGCTCTACACAGGCTGGCTG
CGGGGCATCAACAACCAGGAGCTGGTGCACGCGCGGTTTGGCAAGAAACGGGGGGTTTACCTGGGGCAGGTGGTGGGGAT
CCAACAGGATCAGGTGGGGATCCGGCTGGAGGCACCCCTCAAAGCCGGGGATGGCGTGGTGTTTGACCAGGGGCAGCCGG
AGTTACCGGAGCAGGGGGGACGGGTTTACCGGGTGCAAGAGAAGCAGGGGCTGGCCTGGCTCAGCTTCGGAGAGGGGGTC
ATTGATCTCAAACGTCTGCGGGTGGGGGATCGCCTCTGGAAGACCAGCGACCCGGAACTGGAAAAGCGCCTGCGCCAAAG
CTACGCCGGGGATCACCCCCGCTTTCAGCGGCCTGTCCACATGGAGGTTCACGGCCAAGTGGGATCCCCGCTGACGCTGA
TCCTGCGGGATGAGCAAGGCCATACAGTGCAGGTGGATTCGCCGCTGCCCCTGGAAGCTGCCCACCGCCAACCCCTCACC
ACCGAAAAACTGCGACAGCAACTGGGCCGTTTGGGCTCCACTCCCTTCAAGTTGGGATCCCTGCACAATGCCTTGCAGGG
GGAGGTAATGCTGCCGGTGAGCCTGCTCAACCAGATGCGCCGACAAGCGGTGGAACGCCTACAAGCTCTGCGAGCTCAGC
CCCCGCGCTGGCAACTCAATCCCGAAGCTCGCTGGCAAGATCTGGTGCCTTCTCAGGAGGAGCCCGAAAGGGGATCCCCG
CAGTTGGTGGTGTTGGTGCGGGATCCGGCGCAACTGCCGGCGGCGATAGCCAGCGGTATTAGGCAGATCTATCTGGAGTT
TGAGGATCCCCGCCGCTATCGGGAGGTGATCCGCACAACCAAAGCCGCCCATCCCGAGGTGGAACTGTGGGTCGCTCCGC
CCCGCATCACCAAGCCAGGAGAAACCTGGATCCTAAAGCAAGTGTTGGTCGGCGGAGCCGATGGCTACTTGGTGAGAAAT
TACGACCATCTCCGTTTTTTTGCCGGGCAGCGCTGCATTGGGGATTTTTCCTTGAATGTGGCCAATCCCATCACGGCCCA
CTATCTCAAAACCCGTTACAACCTGGAGCGCCTGACGGCTTCCTATGACCTCAACCACGAGCAACTGGGATCCCTGCTGC
AAGCCGGCCCCGCCCATAGGTATGAGGTTACCCTTCATCAACATATGCCCCTGTTCCACATGGAGCACTGCGTCTTTTGC
GCCTTTTTATCCAGCGGAACGGATTACACCAATTGTGGTCGCCCATGTGAAAAACACGAGGTGAAGCTGAGGGACAGGGC
CAATGTCGAGCACATTTTGAAGGCCGATGCCGGCTGTCGGAATACCCTCTACAACGGCAAGGCCCAAACGGGGGCAGAGT
ATGTGCCGAAATTATTGGCCTTGGGCCTGCGCTATCTGCGCATCGAATTTTTGCATGAATCCCCCGCCGAGATTCAACAA
ACGCTGCATCGCTATCAGCAACTCCTACAAGGTCAACTCAGCGGATCCCAACTGTGGCAGGAGCTGAAGCTACACAGCCA
ATTGGGGGTTACGCGCGGGTCTTTGGAGAGTTAA

Upstream 100 bases:

>100_bases
GGCAGAGGCAGCTTGACCTGAGACAAGGGGATCCTGCTCTCAGGTTTTTTGATTTTGAATGGGAAAGGATCCCTTGTTCT
CTTTGTGGGGCTGTCTTCCG

Downstream 100 bases:

>100_bases
CGGCTGCGCTGTCTTTCTCTAGGGCGCCGGCTCTGCAGCTGTGCTCCGACCGGAGCAATGCGAAAAACATTCCGGCAAAG
TTGGCGTAAAATTTCCTCAG

Product: U32 family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 837; Mature: 837

Protein sequence:

>837_residues
MKAAGIDFAETDHFEAPPLTTKLPLLLAPAGDWECAKAAVENGADAIYFGLERFNARMRARNFTEADLPELMAWLHRRGV
RGYVTLNTLVFPRELTEAEGYIRSMIAAGVDAVIVQDIGIARLIRHLSPDFPIHASTQMTITSGVGAEFAAELGCEVVVL
ARECSLQEIAQIQAYLQEKGSSLSLEVFVHGALCVAYSGQCLTSEALGGRSANRGECAQACRMPYELVVDGIRRDLGEKR
YLLSPQDLAGLEVLPELVKLGIRCLKIEGRLKSPEYVANVTRVYRQALDALGVGQPWQPSQQERYELEMSFSRGLYTGWL
RGINNQELVHARFGKKRGVYLGQVVGIQQDQVGIRLEAPLKAGDGVVFDQGQPELPEQGGRVYRVQEKQGLAWLSFGEGV
IDLKRLRVGDRLWKTSDPELEKRLRQSYAGDHPRFQRPVHMEVHGQVGSPLTLILRDEQGHTVQVDSPLPLEAAHRQPLT
TEKLRQQLGRLGSTPFKLGSLHNALQGEVMLPVSLLNQMRRQAVERLQALRAQPPRWQLNPEARWQDLVPSQEEPERGSP
QLVVLVRDPAQLPAAIASGIRQIYLEFEDPRRYREVIRTTKAAHPEVELWVAPPRITKPGETWILKQVLVGGADGYLVRN
YDHLRFFAGQRCIGDFSLNVANPITAHYLKTRYNLERLTASYDLNHEQLGSLLQAGPAHRYEVTLHQHMPLFHMEHCVFC
AFLSSGTDYTNCGRPCEKHEVKLRDRANVEHILKADAGCRNTLYNGKAQTGAEYVPKLLALGLRYLRIEFLHESPAEIQQ
TLHRYQQLLQGQLSGSQLWQELKLHSQLGVTRGSLES

Sequences:

>Translated_837_residues
MKAAGIDFAETDHFEAPPLTTKLPLLLAPAGDWECAKAAVENGADAIYFGLERFNARMRARNFTEADLPELMAWLHRRGV
RGYVTLNTLVFPRELTEAEGYIRSMIAAGVDAVIVQDIGIARLIRHLSPDFPIHASTQMTITSGVGAEFAAELGCEVVVL
ARECSLQEIAQIQAYLQEKGSSLSLEVFVHGALCVAYSGQCLTSEALGGRSANRGECAQACRMPYELVVDGIRRDLGEKR
YLLSPQDLAGLEVLPELVKLGIRCLKIEGRLKSPEYVANVTRVYRQALDALGVGQPWQPSQQERYELEMSFSRGLYTGWL
RGINNQELVHARFGKKRGVYLGQVVGIQQDQVGIRLEAPLKAGDGVVFDQGQPELPEQGGRVYRVQEKQGLAWLSFGEGV
IDLKRLRVGDRLWKTSDPELEKRLRQSYAGDHPRFQRPVHMEVHGQVGSPLTLILRDEQGHTVQVDSPLPLEAAHRQPLT
TEKLRQQLGRLGSTPFKLGSLHNALQGEVMLPVSLLNQMRRQAVERLQALRAQPPRWQLNPEARWQDLVPSQEEPERGSP
QLVVLVRDPAQLPAAIASGIRQIYLEFEDPRRYREVIRTTKAAHPEVELWVAPPRITKPGETWILKQVLVGGADGYLVRN
YDHLRFFAGQRCIGDFSLNVANPITAHYLKTRYNLERLTASYDLNHEQLGSLLQAGPAHRYEVTLHQHMPLFHMEHCVFC
AFLSSGTDYTNCGRPCEKHEVKLRDRANVEHILKADAGCRNTLYNGKAQTGAEYVPKLLALGLRYLRIEFLHESPAEIQQ
TLHRYQQLLQGQLSGSQLWQELKLHSQLGVTRGSLES
>Mature_837_residues
MKAAGIDFAETDHFEAPPLTTKLPLLLAPAGDWECAKAAVENGADAIYFGLERFNARMRARNFTEADLPELMAWLHRRGV
RGYVTLNTLVFPRELTEAEGYIRSMIAAGVDAVIVQDIGIARLIRHLSPDFPIHASTQMTITSGVGAEFAAELGCEVVVL
ARECSLQEIAQIQAYLQEKGSSLSLEVFVHGALCVAYSGQCLTSEALGGRSANRGECAQACRMPYELVVDGIRRDLGEKR
YLLSPQDLAGLEVLPELVKLGIRCLKIEGRLKSPEYVANVTRVYRQALDALGVGQPWQPSQQERYELEMSFSRGLYTGWL
RGINNQELVHARFGKKRGVYLGQVVGIQQDQVGIRLEAPLKAGDGVVFDQGQPELPEQGGRVYRVQEKQGLAWLSFGEGV
IDLKRLRVGDRLWKTSDPELEKRLRQSYAGDHPRFQRPVHMEVHGQVGSPLTLILRDEQGHTVQVDSPLPLEAAHRQPLT
TEKLRQQLGRLGSTPFKLGSLHNALQGEVMLPVSLLNQMRRQAVERLQALRAQPPRWQLNPEARWQDLVPSQEEPERGSP
QLVVLVRDPAQLPAAIASGIRQIYLEFEDPRRYREVIRTTKAAHPEVELWVAPPRITKPGETWILKQVLVGGADGYLVRN
YDHLRFFAGQRCIGDFSLNVANPITAHYLKTRYNLERLTASYDLNHEQLGSLLQAGPAHRYEVTLHQHMPLFHMEHCVFC
AFLSSGTDYTNCGRPCEKHEVKLRDRANVEHILKADAGCRNTLYNGKAQTGAEYVPKLLALGLRYLRIEFLHESPAEIQQ
TLHRYQQLLQGQLSGSQLWQELKLHSQLGVTRGSLES

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=515, Percent_Identity=34.368932038835, Blast_Score=247, Evalue=3e-66,
Organism=Escherichia coli, GI1788397, Length=393, Percent_Identity=29.2620865139949, Blast_Score=154, Evalue=2e-38,
Organism=Escherichia coli, GI1789548, Length=296, Percent_Identity=32.0945945945946, Blast_Score=130, Evalue=3e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 93889; Mature: 93889

Theoretical pI: Translated: 7.62; Mature: 7.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAAGIDFAETDHFEAPPLTTKLPLLLAPAGDWECAKAAVENGADAIYFGLERFNARMRA
CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHCCCCEEEHHHHHHHHHHHH
RNFTEADLPELMAWLHRRGVRGYVTLNTLVFPRELTEAEGYIRSMIAAGVDAVIVQDIGI
CCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHCCCEEHHHHCCH
ARLIRHLSPDFPIHASTQMTITSGVGAEFAAELGCEVVVLARECSLQEIAQIQAYLQEKG
HHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCC
SSLSLEVFVHGALCVAYSGQCLTSEALGGRSANRGECAQACRMPYELVVDGIRRDLGEKR
CCEEEEEEEEEEEEEEECCCEEEHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCC
YLLSPQDLAGLEVLPELVKLGIRCLKIEGRLKSPEYVANVTRVYRQALDALGVGQPWQPS
EECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
QQERYELEMSFSRGLYTGWLRGINNQELVHARFGKKRGVYLGQVVGIQQDQVGIRLEAPL
HHHHEEEEEHHHCCHHHHHHCCCCCCHHHHHHHCCCCCCEEEHEECCCCCCCCEEEECCC
KAGDGVVFDQGQPELPEQGGRVYRVQEKQGLAWLSFGEGVIDLKRLRVGDRLWKTSDPEL
CCCCCEEECCCCCCCCCCCCCEEEEECCCCCEEEECCCCHHHHHHHHHHHHHCCCCCHHH
EKRLRQSYAGDHPRFQRPVHMEVHGQVGSPLTLILRDEQGHTVQVDSPLPLEAAHRQPLT
HHHHHHHHCCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCEEEECCCCCCHHHCCCCCC
TEKLRQQLGRLGSTPFKLGSLHNALQGEVMLPVSLLNQMRRQAVERLQALRAQPPRWQLN
HHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PEARWQDLVPSQEEPERGSPQLVVLVRDPAQLPAAIASGIRQIYLEFEDPRRYREVIRTT
CCCHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHEEEEECCCCHHHHHHHHHH
KAAHPEVELWVAPPRITKPGETWILKQVLVGGADGYLVRNYDHLRFFAGQRCIGDFSLNV
HCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEECCHHHHHHHCCCEECCCCCCC
ANPITAHYLKTRYNLERLTASYDLNHEQLGSLLQAGPAHRYEVTLHQHMPLFHMEHCVFC
CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEHHHCCCHHHHHHHHHH
AFLSSGTDYTNCGRPCEKHEVKLRDRANVEHILKADAGCRNTLYNGKAQTGAEYVPKLLA
HHHHCCCCCCCCCCCCHHHCCHHHHHCCHHHHHHCCCCCCHHCCCCCCCCCHHHHHHHHH
LGLRYLRIEFLHESPAEIQQTLHRYQQLLQGQLSGSQLWQELKLHSQLGVTRGSLES
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKAAGIDFAETDHFEAPPLTTKLPLLLAPAGDWECAKAAVENGADAIYFGLERFNARMRA
CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHCCCCEEEHHHHHHHHHHHH
RNFTEADLPELMAWLHRRGVRGYVTLNTLVFPRELTEAEGYIRSMIAAGVDAVIVQDIGI
CCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHCCCEEHHHHCCH
ARLIRHLSPDFPIHASTQMTITSGVGAEFAAELGCEVVVLARECSLQEIAQIQAYLQEKG
HHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCC
SSLSLEVFVHGALCVAYSGQCLTSEALGGRSANRGECAQACRMPYELVVDGIRRDLGEKR
CCEEEEEEEEEEEEEEECCCEEEHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCC
YLLSPQDLAGLEVLPELVKLGIRCLKIEGRLKSPEYVANVTRVYRQALDALGVGQPWQPS
EECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
QQERYELEMSFSRGLYTGWLRGINNQELVHARFGKKRGVYLGQVVGIQQDQVGIRLEAPL
HHHHEEEEEHHHCCHHHHHHCCCCCCHHHHHHHCCCCCCEEEHEECCCCCCCCEEEECCC
KAGDGVVFDQGQPELPEQGGRVYRVQEKQGLAWLSFGEGVIDLKRLRVGDRLWKTSDPEL
CCCCCEEECCCCCCCCCCCCCEEEEECCCCCEEEECCCCHHHHHHHHHHHHHCCCCCHHH
EKRLRQSYAGDHPRFQRPVHMEVHGQVGSPLTLILRDEQGHTVQVDSPLPLEAAHRQPLT
HHHHHHHHCCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCEEEECCCCCCHHHCCCCCC
TEKLRQQLGRLGSTPFKLGSLHNALQGEVMLPVSLLNQMRRQAVERLQALRAQPPRWQLN
HHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PEARWQDLVPSQEEPERGSPQLVVLVRDPAQLPAAIASGIRQIYLEFEDPRRYREVIRTT
CCCHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHEEEEECCCCHHHHHHHHHH
KAAHPEVELWVAPPRITKPGETWILKQVLVGGADGYLVRNYDHLRFFAGQRCIGDFSLNV
HCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEECCHHHHHHHCCCEECCCCCCC
ANPITAHYLKTRYNLERLTASYDLNHEQLGSLLQAGPAHRYEVTLHQHMPLFHMEHCVFC
CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEHHHCCCHHHHHHHHHH
AFLSSGTDYTNCGRPCEKHEVKLRDRANVEHILKADAGCRNTLYNGKAQTGAEYVPKLLA
HHHHCCCCCCCCCCCCHHHCCHHHHHCCHHHHHHCCCCCCHHCCCCCCCCCHHHHHHHHH
LGLRYLRIEFLHESPAEIQQTLHRYQQLLQGQLSGSQLWQELKLHSQLGVTRGSLES
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]