Click here to switch to the map view.

The map label for this gene is dapB [H]

Identifier: 86608403

GI number: 86608403

Start: 960698

End: 961558

Strand: Direct

Name: dapB [H]

Synonym: CYB_0924

Alternate gene names: 86608403

Gene position: 960698-961558 (Clockwise)

Preceding gene: 86608402

Following gene: 86608413

Centisome position: 31.53

GC content: 61.56

Gene sequence:

>861_bases
TTGGCAACTCCAGGAGCGGCCCAATCCCCCATCCCGGTTTTGGTGGTGGGGGCCCTGGGCAAAATGGGGCGAGAGGTGGT
GCGAGCCGTTGCCGAGACGCCCGACATGAGGTTGGTGGGGGCGGTGGCCCGCTCGCAATTGGGCTTGGACATTGGCGAGG
TGCTGGGCCTGGGATCCCTGGGGGTGGAGATTACCGATGACTTGTCGGGGCAGTTGCTGAGGTTGTCGCAGCGGAGCAAC
CGCGGCGTGATGGTGGATTTTACCCATCCTTGGTCGGCATTTGAACATGTTCGCTCGGCCATTGCCTTTGGCGTGCGTCC
GGTGGTGGGGACGACGGGCCTGACGCCGGAGCAGGTGGAGCGGCTGCGGGATCTGGCGGACAAGTCGGGTGTGGGCTGTT
TAATCGCGCCCAATTTTGCCATCGGCATGATTTTGCTGCAGCAGATGGCGCTGCAGGCGGCCCAGTATTTTGACCATGTC
GAGATCATCGAGCTGCACCACAACCGCAAAGCGGATGCCCCCAGCGGCACGGCTCTACAGACGGCCCAACGGCTGGGACA
ATTGGGCAAAACCTTTAACCCGCCCGTTCGCGACAGCGGGACGGAGTCCTCAGTGGAAGAAAAAGAGCTGATCCCCGGTG
CGCGGGGAGGGCTCTCTGGCCCCAACATTCCCATTCACAGCGTTCGTCTGCCGGGGTTGATCGCCCATCAGGAGGTCATT
TTTGGTGGGATGGGGCAAACCCTCACCTTGAGACACGACACCACGGATCGGATAGCTTTTATGCCGGGAGTGATCCTGGG
GATCCGCAAGGTGCTGCAGCTCAAAGGTTTGGTCTACGGGCTGGAGCAAGTGTTGAGCTAG

Upstream 100 bases:

>100_bases
CTTTCGCAGTCATTTCGTAGAGCTTGGATGAGGGTAGCAGCGGGTGACAACATCGGTTGATCCGGTCGATCGCGATAGTG
GTGCAGACCCCTCTCAGGGG

Downstream 100 bases:

>100_bases
CCGGTCAGGGGAGGGATCCCGGCCTCATCCAGAATGCGGGGGATGAGGTGCTCGGCTTTGACGGCCATCAGATGCACCCC
ATGGCAGATCTGGCGGGCCT

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 286; Mature: 285

Protein sequence:

>286_residues
MATPGAAQSPIPVLVVGALGKMGREVVRAVAETPDMRLVGAVARSQLGLDIGEVLGLGSLGVEITDDLSGQLLRLSQRSN
RGVMVDFTHPWSAFEHVRSAIAFGVRPVVGTTGLTPEQVERLRDLADKSGVGCLIAPNFAIGMILLQQMALQAAQYFDHV
EIIELHHNRKADAPSGTALQTAQRLGQLGKTFNPPVRDSGTESSVEEKELIPGARGGLSGPNIPIHSVRLPGLIAHQEVI
FGGMGQTLTLRHDTTDRIAFMPGVILGIRKVLQLKGLVYGLEQVLS

Sequences:

>Translated_286_residues
MATPGAAQSPIPVLVVGALGKMGREVVRAVAETPDMRLVGAVARSQLGLDIGEVLGLGSLGVEITDDLSGQLLRLSQRSN
RGVMVDFTHPWSAFEHVRSAIAFGVRPVVGTTGLTPEQVERLRDLADKSGVGCLIAPNFAIGMILLQQMALQAAQYFDHV
EIIELHHNRKADAPSGTALQTAQRLGQLGKTFNPPVRDSGTESSVEEKELIPGARGGLSGPNIPIHSVRLPGLIAHQEVI
FGGMGQTLTLRHDTTDRIAFMPGVILGIRKVLQLKGLVYGLEQVLS
>Mature_285_residues
ATPGAAQSPIPVLVVGALGKMGREVVRAVAETPDMRLVGAVARSQLGLDIGEVLGLGSLGVEITDDLSGQLLRLSQRSNR
GVMVDFTHPWSAFEHVRSAIAFGVRPVVGTTGLTPEQVERLRDLADKSGVGCLIAPNFAIGMILLQQMALQAAQYFDHVE
IIELHHNRKADAPSGTALQTAQRLGQLGKTFNPPVRDSGTESSVEEKELIPGARGGLSGPNIPIHSVRLPGLIAHQEVIF
GGMGQTLTLRHDTTDRIAFMPGVILGIRKVLQLKGLVYGLEQVLS

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=284, Percent_Identity=27.112676056338, Blast_Score=98, Evalue=7e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 30432; Mature: 30301

Theoretical pI: Translated: 7.30; Mature: 7.30

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATPGAAQSPIPVLVVGALGKMGREVVRAVAETPDMRLVGAVARSQLGLDIGEVLGLGSL
CCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHCCCCC
GVEITDDLSGQLLRLSQRSNRGVMVDFTHPWSAFEHVRSAIAFGVRPVVGTTGLTPEQVE
CCEECCCCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCHHCCCCCCCHHHHH
RLRDLADKSGVGCLIAPNFAIGMILLQQMALQAAQYFDHVEIIELHHNRKADAPSGTALQ
HHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCHHEEEECCCCCCCCCCCHHHH
TAQRLGQLGKTFNPPVRDSGTESSVEEKELIPGARGGLSGPNIPIHSVRLPGLIAHQEVI
HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHH
FGGMGQTLTLRHDTTDRIAFMPGVILGIRKVLQLKGLVYGLEQVLS
HCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
ATPGAAQSPIPVLVVGALGKMGREVVRAVAETPDMRLVGAVARSQLGLDIGEVLGLGSL
CCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHCCCCC
GVEITDDLSGQLLRLSQRSNRGVMVDFTHPWSAFEHVRSAIAFGVRPVVGTTGLTPEQVE
CCEECCCCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCHHCCCCCCCHHHHH
RLRDLADKSGVGCLIAPNFAIGMILLQQMALQAAQYFDHVEIIELHHNRKADAPSGTALQ
HHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCHHEEEECCCCCCCCCCCHHHH
TAQRLGQLGKTFNPPVRDSGTESSVEEKELIPGARGGLSGPNIPIHSVRLPGLIAHQEVI
HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHH
FGGMGQTLTLRHDTTDRIAFMPGVILGIRKVLQLKGLVYGLEQVLS
HCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]