Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

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The map label for this gene is 86608374

Identifier: 86608374

GI number: 86608374

Start: 925904

End: 927250

Strand: Reverse

Name: 86608374

Synonym: CYB_0893

Alternate gene names: NA

Gene position: 927250-925904 (Counterclockwise)

Preceding gene: 86608380

Following gene: 86608371

Centisome position: 30.43

GC content: 63.03

Gene sequence:

>1347_bases
ATGCCCGCTCTCGGGCAGGCAGTCTCAGCATCCATCCAGTATCCCTGGCTGCGGCAAGCCTCGTCCAGGAGTGGCAGCGT
GGATAGAGCAGAACAACAACGGCTGCGCCAGGCTGCCTGGCTGATGGTGGGCAATGGCCTGCGCCTGGGGTTGTCCGGGG
CCTATTTCATCCTGTTGGCCCGTCTGTTGGGGCCGGAAGCCTTCGGGGTTTTCTCTGCCATCTTGGCCTGCAGCAACCTG
GCCGCCCCGTTTGGCTATTTGGGCCAATCGGAACTGCTGATCCAGCGCCTCAGCCGGCAGGGATCCCCGACTTGCACCCA
GGGGATTGGCCCCAGCTTATGGTTGGCGGGATTGGGCTGTGGGGGGATGGCGCTGGTGTTGTGGCCCCTCTTGAGCGTTT
GGCTGGCCGGGACGCCAGCAGCGGTGGTGGGGGTATTGCTTTTGAGCGATCTGCTGTTCATCGCGGTGCCAGAGGTGTAC
AGGGGGATCCTGATCGGGAGAGAGCAGGCTGCTGGGGTAGCCCTCATCGACACGGGCATGGCGCTGGGGCGATTGGGGGC
AGTGTTGTTGGCGGTGGCCTTGGGCTGGGGATCCCTGGTGCAATGGGCTGTTCTGTACGGCCTGATGGTGTTGGTCGTGC
TGCTGCTGATCGCGAGGGGGATGGGACGGTGGAGCGAGCCTTCTCTCCCCTTGGCCCTGAGCTGGAGAGATCTGCGGGAA
CGGCTGACAGCGGGCTGGGACTTTGCGGTGGGGCTGGCCGCGGTGAAAACCTTCACCGATTTGGATAAGCTGCTCTTGCC
CCGTTTGGCCTCAGCAGCAGCGGGGGGTCTTTACAGCGCTGCCTATCGGGTGATCAACTTCTCGCAAACGCCGATGATTG
CTCTGCTCACCAGCCATTTTGCCGAGCTGTGCCGCCAAGGCCAAAAAGGACTCCCACAAGGCTGGCGCTACGCCTGTCAC
CTTTCCCCTTGGGTGGTGGGCTACGGCAGTTTGGCTGCTCTGGGGCTGGCCCTGGGATCCTACGGGATCCCCTGGGTGCT
GGGATCGGCTTACCGGGAAACGGCCCTCATCCTGCGCTGGCTCAGCCCGGTCATTTTGCTGGAAGGGATCCACCTTTTGC
TATCTCACCTGCTCACTGGAGCAGGGTTGCAAAAGCCCCGCAGCCGTCTGCAACTGATGGCTCTGGGGCTGAATGGGCTT
TTGAATGCGGTTTGGATCCCAAGGTGGGGTTGGCAGGGGGCGGCCCTAGCGACCTTGCTGTCGGAGATGGCCTTGGTGCT
GGCTTTGCTGCTGTTGATTCGGGGGCAGCTGCGCTCTCTGCAGAGAGCTGGGCCTAGGGCGCCTTAA

Upstream 100 bases:

>100_bases
GCCAAGGTGTGGGGGCTTCGCGCGGCGTTGCTGACGGGGTAGAGTTTGGCCATGAAATTGCCAGAAGAATTGCAACCGAT
ACACCCAAAATCGAGAGGAG

Downstream 100 bases:

>100_bases
CGATTTTGTAGGTGGCTTTGGCATCGGGGCCAAAGGTGATCACATCCCCCGACTTGAGCTGGTGGGTGGTCAATTTCTGG
CCGTTGATCAACAAGCCATT

Product: polysaccharide biosynthesis family protein

Products: NA

Alternate protein names: Polysaccharide Biosynthesis Domain-Containing Protein

Number of amino acids: Translated: 448; Mature: 447

Protein sequence:

>448_residues
MPALGQAVSASIQYPWLRQASSRSGSVDRAEQQRLRQAAWLMVGNGLRLGLSGAYFILLARLLGPEAFGVFSAILACSNL
AAPFGYLGQSELLIQRLSRQGSPTCTQGIGPSLWLAGLGCGGMALVLWPLLSVWLAGTPAAVVGVLLLSDLLFIAVPEVY
RGILIGREQAAGVALIDTGMALGRLGAVLLAVALGWGSLVQWAVLYGLMVLVVLLLIARGMGRWSEPSLPLALSWRDLRE
RLTAGWDFAVGLAAVKTFTDLDKLLLPRLASAAAGGLYSAAYRVINFSQTPMIALLTSHFAELCRQGQKGLPQGWRYACH
LSPWVVGYGSLAALGLALGSYGIPWVLGSAYRETALILRWLSPVILLEGIHLLLSHLLTGAGLQKPRSRLQLMALGLNGL
LNAVWIPRWGWQGAALATLLSEMALVLALLLLIRGQLRSLQRAGPRAP

Sequences:

>Translated_448_residues
MPALGQAVSASIQYPWLRQASSRSGSVDRAEQQRLRQAAWLMVGNGLRLGLSGAYFILLARLLGPEAFGVFSAILACSNL
AAPFGYLGQSELLIQRLSRQGSPTCTQGIGPSLWLAGLGCGGMALVLWPLLSVWLAGTPAAVVGVLLLSDLLFIAVPEVY
RGILIGREQAAGVALIDTGMALGRLGAVLLAVALGWGSLVQWAVLYGLMVLVVLLLIARGMGRWSEPSLPLALSWRDLRE
RLTAGWDFAVGLAAVKTFTDLDKLLLPRLASAAAGGLYSAAYRVINFSQTPMIALLTSHFAELCRQGQKGLPQGWRYACH
LSPWVVGYGSLAALGLALGSYGIPWVLGSAYRETALILRWLSPVILLEGIHLLLSHLLTGAGLQKPRSRLQLMALGLNGL
LNAVWIPRWGWQGAALATLLSEMALVLALLLLIRGQLRSLQRAGPRAP
>Mature_447_residues
PALGQAVSASIQYPWLRQASSRSGSVDRAEQQRLRQAAWLMVGNGLRLGLSGAYFILLARLLGPEAFGVFSAILACSNLA
APFGYLGQSELLIQRLSRQGSPTCTQGIGPSLWLAGLGCGGMALVLWPLLSVWLAGTPAAVVGVLLLSDLLFIAVPEVYR
GILIGREQAAGVALIDTGMALGRLGAVLLAVALGWGSLVQWAVLYGLMVLVVLLLIARGMGRWSEPSLPLALSWRDLRER
LTAGWDFAVGLAAVKTFTDLDKLLLPRLASAAAGGLYSAAYRVINFSQTPMIALLTSHFAELCRQGQKGLPQGWRYACHL
SPWVVGYGSLAALGLALGSYGIPWVLGSAYRETALILRWLSPVILLEGIHLLLSHLLTGAGLQKPRSRLQLMALGLNGLL
NAVWIPRWGWQGAALATLLSEMALVLALLLLIRGQLRSLQRAGPRAP

Specific function: Unknown

COG id: COG2244

COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47812; Mature: 47681

Theoretical pI: Translated: 10.57; Mature: 10.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPALGQAVSASIQYPWLRQASSRSGSVDRAEQQRLRQAAWLMVGNGLRLGLSGAYFILLA
CCCCCHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHH
RLLGPEAFGVFSAILACSNLAAPFGYLGQSELLIQRLSRQGSPTCTQGIGPSLWLAGLGC
HHHCCHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHCCCCCCCHHCCCHHHHHHHCCC
GGMALVLWPLLSVWLAGTPAAVVGVLLLSDLLFIAVPEVYRGILIGREQAAGVALIDTGM
CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCEEEEHHHH
ALGRLGAVLLAVALGWGSLVQWAVLYGLMVLVVLLLIARGMGRWSEPSLPLALSWRDLRE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHHH
RLTAGWDFAVGLAAVKTFTDLDKLLLPRLASAAAGGLYSAAYRVINFSQTPMIALLTSHF
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHH
AELCRQGQKGLPQGWRYACHLSPWVVGYGSLAALGLALGSYGIPWVLGSAYRETALILRW
HHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LSPVILLEGIHLLLSHLLTGAGLQKPRSRLQLMALGLNGLLNAVWIPRWGWQGAALATLL
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
SEMALVLALLLLIRGQLRSLQRAGPRAP
HHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
PALGQAVSASIQYPWLRQASSRSGSVDRAEQQRLRQAAWLMVGNGLRLGLSGAYFILLA
CCCCHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHH
RLLGPEAFGVFSAILACSNLAAPFGYLGQSELLIQRLSRQGSPTCTQGIGPSLWLAGLGC
HHHCCHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHCCCCCCCHHCCCHHHHHHHCCC
GGMALVLWPLLSVWLAGTPAAVVGVLLLSDLLFIAVPEVYRGILIGREQAAGVALIDTGM
CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCEEEEHHHH
ALGRLGAVLLAVALGWGSLVQWAVLYGLMVLVVLLLIARGMGRWSEPSLPLALSWRDLRE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHHH
RLTAGWDFAVGLAAVKTFTDLDKLLLPRLASAAAGGLYSAAYRVINFSQTPMIALLTSHF
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHH
AELCRQGQKGLPQGWRYACHLSPWVVGYGSLAALGLALGSYGIPWVLGSAYRETALILRW
HHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LSPVILLEGIHLLLSHLLTGAGLQKPRSRLQLMALGLNGLLNAVWIPRWGWQGAALATLL
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
SEMALVLALLLLIRGQLRSLQRAGPRAP
HHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA