| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608374
Identifier: 86608374
GI number: 86608374
Start: 925904
End: 927250
Strand: Reverse
Name: 86608374
Synonym: CYB_0893
Alternate gene names: NA
Gene position: 927250-925904 (Counterclockwise)
Preceding gene: 86608380
Following gene: 86608371
Centisome position: 30.43
GC content: 63.03
Gene sequence:
>1347_bases ATGCCCGCTCTCGGGCAGGCAGTCTCAGCATCCATCCAGTATCCCTGGCTGCGGCAAGCCTCGTCCAGGAGTGGCAGCGT GGATAGAGCAGAACAACAACGGCTGCGCCAGGCTGCCTGGCTGATGGTGGGCAATGGCCTGCGCCTGGGGTTGTCCGGGG CCTATTTCATCCTGTTGGCCCGTCTGTTGGGGCCGGAAGCCTTCGGGGTTTTCTCTGCCATCTTGGCCTGCAGCAACCTG GCCGCCCCGTTTGGCTATTTGGGCCAATCGGAACTGCTGATCCAGCGCCTCAGCCGGCAGGGATCCCCGACTTGCACCCA GGGGATTGGCCCCAGCTTATGGTTGGCGGGATTGGGCTGTGGGGGGATGGCGCTGGTGTTGTGGCCCCTCTTGAGCGTTT GGCTGGCCGGGACGCCAGCAGCGGTGGTGGGGGTATTGCTTTTGAGCGATCTGCTGTTCATCGCGGTGCCAGAGGTGTAC AGGGGGATCCTGATCGGGAGAGAGCAGGCTGCTGGGGTAGCCCTCATCGACACGGGCATGGCGCTGGGGCGATTGGGGGC AGTGTTGTTGGCGGTGGCCTTGGGCTGGGGATCCCTGGTGCAATGGGCTGTTCTGTACGGCCTGATGGTGTTGGTCGTGC TGCTGCTGATCGCGAGGGGGATGGGACGGTGGAGCGAGCCTTCTCTCCCCTTGGCCCTGAGCTGGAGAGATCTGCGGGAA CGGCTGACAGCGGGCTGGGACTTTGCGGTGGGGCTGGCCGCGGTGAAAACCTTCACCGATTTGGATAAGCTGCTCTTGCC CCGTTTGGCCTCAGCAGCAGCGGGGGGTCTTTACAGCGCTGCCTATCGGGTGATCAACTTCTCGCAAACGCCGATGATTG CTCTGCTCACCAGCCATTTTGCCGAGCTGTGCCGCCAAGGCCAAAAAGGACTCCCACAAGGCTGGCGCTACGCCTGTCAC CTTTCCCCTTGGGTGGTGGGCTACGGCAGTTTGGCTGCTCTGGGGCTGGCCCTGGGATCCTACGGGATCCCCTGGGTGCT GGGATCGGCTTACCGGGAAACGGCCCTCATCCTGCGCTGGCTCAGCCCGGTCATTTTGCTGGAAGGGATCCACCTTTTGC TATCTCACCTGCTCACTGGAGCAGGGTTGCAAAAGCCCCGCAGCCGTCTGCAACTGATGGCTCTGGGGCTGAATGGGCTT TTGAATGCGGTTTGGATCCCAAGGTGGGGTTGGCAGGGGGCGGCCCTAGCGACCTTGCTGTCGGAGATGGCCTTGGTGCT GGCTTTGCTGCTGTTGATTCGGGGGCAGCTGCGCTCTCTGCAGAGAGCTGGGCCTAGGGCGCCTTAA
Upstream 100 bases:
>100_bases GCCAAGGTGTGGGGGCTTCGCGCGGCGTTGCTGACGGGGTAGAGTTTGGCCATGAAATTGCCAGAAGAATTGCAACCGAT ACACCCAAAATCGAGAGGAG
Downstream 100 bases:
>100_bases CGATTTTGTAGGTGGCTTTGGCATCGGGGCCAAAGGTGATCACATCCCCCGACTTGAGCTGGTGGGTGGTCAATTTCTGG CCGTTGATCAACAAGCCATT
Product: polysaccharide biosynthesis family protein
Products: NA
Alternate protein names: Polysaccharide Biosynthesis Domain-Containing Protein
Number of amino acids: Translated: 448; Mature: 447
Protein sequence:
>448_residues MPALGQAVSASIQYPWLRQASSRSGSVDRAEQQRLRQAAWLMVGNGLRLGLSGAYFILLARLLGPEAFGVFSAILACSNL AAPFGYLGQSELLIQRLSRQGSPTCTQGIGPSLWLAGLGCGGMALVLWPLLSVWLAGTPAAVVGVLLLSDLLFIAVPEVY RGILIGREQAAGVALIDTGMALGRLGAVLLAVALGWGSLVQWAVLYGLMVLVVLLLIARGMGRWSEPSLPLALSWRDLRE RLTAGWDFAVGLAAVKTFTDLDKLLLPRLASAAAGGLYSAAYRVINFSQTPMIALLTSHFAELCRQGQKGLPQGWRYACH LSPWVVGYGSLAALGLALGSYGIPWVLGSAYRETALILRWLSPVILLEGIHLLLSHLLTGAGLQKPRSRLQLMALGLNGL LNAVWIPRWGWQGAALATLLSEMALVLALLLLIRGQLRSLQRAGPRAP
Sequences:
>Translated_448_residues MPALGQAVSASIQYPWLRQASSRSGSVDRAEQQRLRQAAWLMVGNGLRLGLSGAYFILLARLLGPEAFGVFSAILACSNL AAPFGYLGQSELLIQRLSRQGSPTCTQGIGPSLWLAGLGCGGMALVLWPLLSVWLAGTPAAVVGVLLLSDLLFIAVPEVY RGILIGREQAAGVALIDTGMALGRLGAVLLAVALGWGSLVQWAVLYGLMVLVVLLLIARGMGRWSEPSLPLALSWRDLRE RLTAGWDFAVGLAAVKTFTDLDKLLLPRLASAAAGGLYSAAYRVINFSQTPMIALLTSHFAELCRQGQKGLPQGWRYACH LSPWVVGYGSLAALGLALGSYGIPWVLGSAYRETALILRWLSPVILLEGIHLLLSHLLTGAGLQKPRSRLQLMALGLNGL LNAVWIPRWGWQGAALATLLSEMALVLALLLLIRGQLRSLQRAGPRAP >Mature_447_residues PALGQAVSASIQYPWLRQASSRSGSVDRAEQQRLRQAAWLMVGNGLRLGLSGAYFILLARLLGPEAFGVFSAILACSNLA APFGYLGQSELLIQRLSRQGSPTCTQGIGPSLWLAGLGCGGMALVLWPLLSVWLAGTPAAVVGVLLLSDLLFIAVPEVYR GILIGREQAAGVALIDTGMALGRLGAVLLAVALGWGSLVQWAVLYGLMVLVVLLLIARGMGRWSEPSLPLALSWRDLRER LTAGWDFAVGLAAVKTFTDLDKLLLPRLASAAAGGLYSAAYRVINFSQTPMIALLTSHFAELCRQGQKGLPQGWRYACHL SPWVVGYGSLAALGLALGSYGIPWVLGSAYRETALILRWLSPVILLEGIHLLLSHLLTGAGLQKPRSRLQLMALGLNGLL NAVWIPRWGWQGAALATLLSEMALVLALLLLIRGQLRSLQRAGPRAP
Specific function: Unknown
COG id: COG2244
COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47812; Mature: 47681
Theoretical pI: Translated: 10.57; Mature: 10.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPALGQAVSASIQYPWLRQASSRSGSVDRAEQQRLRQAAWLMVGNGLRLGLSGAYFILLA CCCCCHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHH RLLGPEAFGVFSAILACSNLAAPFGYLGQSELLIQRLSRQGSPTCTQGIGPSLWLAGLGC HHHCCHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHCCCCCCCHHCCCHHHHHHHCCC GGMALVLWPLLSVWLAGTPAAVVGVLLLSDLLFIAVPEVYRGILIGREQAAGVALIDTGM CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCEEEEHHHH ALGRLGAVLLAVALGWGSLVQWAVLYGLMVLVVLLLIARGMGRWSEPSLPLALSWRDLRE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHHH RLTAGWDFAVGLAAVKTFTDLDKLLLPRLASAAAGGLYSAAYRVINFSQTPMIALLTSHF HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHH AELCRQGQKGLPQGWRYACHLSPWVVGYGSLAALGLALGSYGIPWVLGSAYRETALILRW HHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH LSPVILLEGIHLLLSHLLTGAGLQKPRSRLQLMALGLNGLLNAVWIPRWGWQGAALATLL HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH SEMALVLALLLLIRGQLRSLQRAGPRAP HHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure PALGQAVSASIQYPWLRQASSRSGSVDRAEQQRLRQAAWLMVGNGLRLGLSGAYFILLA CCCCHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHH RLLGPEAFGVFSAILACSNLAAPFGYLGQSELLIQRLSRQGSPTCTQGIGPSLWLAGLGC HHHCCHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHCCCCCCCHHCCCHHHHHHHCCC GGMALVLWPLLSVWLAGTPAAVVGVLLLSDLLFIAVPEVYRGILIGREQAAGVALIDTGM CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCEEEEHHHH ALGRLGAVLLAVALGWGSLVQWAVLYGLMVLVVLLLIARGMGRWSEPSLPLALSWRDLRE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHHH RLTAGWDFAVGLAAVKTFTDLDKLLLPRLASAAAGGLYSAAYRVINFSQTPMIALLTSHF HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHH AELCRQGQKGLPQGWRYACHLSPWVVGYGSLAALGLALGSYGIPWVLGSAYRETALILRW HHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH LSPVILLEGIHLLLSHLLTGAGLQKPRSRLQLMALGLNGLLNAVWIPRWGWQGAALATLL HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH SEMALVLALLLLIRGQLRSLQRAGPRAP HHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA