| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608323
Identifier: 86608323
GI number: 86608323
Start: 872763
End: 873902
Strand: Reverse
Name: 86608323
Synonym: CYB_0841
Alternate gene names: NA
Gene position: 873902-872763 (Counterclockwise)
Preceding gene: 86608324
Following gene: 86608322
Centisome position: 28.68
GC content: 62.81
Gene sequence:
>1140_bases ATGAGTTGGTTTACCCTATCACCCTTGGATGTGTGGATGTTTCGAGATGCTAAGCCCTTTGCCCCGGGAGAGCGGGCCTG GGCCAATAGCAGCTTTCCCCCTAGCGGCCATACCTTGGCCGGGGCTGTTCAAGCCTACCTGGGCCAACCCTTGACGCTGC GGCTGCGGGGCCCCTTTCTCTGCCACGACGAAAGGCTCTATTTCCCCGCCCCTCTGCATCTGGAAGACGGATTCCCCCTT GTTCCCGTTCCTTGGTTGGACGAGAGGGATCCCTACTTCCATTGCCACTGGGATCCCACCCGGCCAGCCCCCTTGGTTTC CTTGAGGCCGGTAGAGGAGGAACCCGAACGCAGCCAGAGCAGCAAGAAGAAAAAAACAGGAGGCTACCTGCCCTTCGAGG TGGTGCAAAAGGCGCTGGAAGGCAAAGGCTGGGATCTCAGCCAGGCCGTCAAGCCGCCGTTGAAGTATGAAGTACGGCCC CACAACACCCTGCAGGTGAGCAAGCGGCAAGTGCGAGAAGCCGATGGCTACTTTGTGGAGACCTGCATCCGCCTTCAGCC GGGCTGGAGTTTGGCCCTTTCCATCGAGGGCTGGGATCCCGATCGCGAAGCCTGGGATCCCCTACCCCTTACTCAGGAAG CAGTGCTGCGGCTGGGGGGAGAAGGCCACTGCGCTTTGCTGGCCCCCTGTCCGAAGCTGCAGGAGCAGTGGCAGCAGTTG CAGGCCCTTTCTCAGGCCGCCTTTTGCCAAGCCGGACGCGCTTTGGCCTACTTAGCGACCCCAGGCGTGTTCATCAAGAA GGTGGAGGGACGCTCCCTATGCCGTGCCTGGCCCTGGGAATGGAGATTGGCCACTCCCCACCCCGCCCATCCCCTCACCG GCCCCTTGGTGAGCGTGGCCACCGGCAAGCCCGTTGCCATCAGTGGACGCCTGCGGGTGGATCGCCCCCCAGAGCAGCGG CAGATGAGCCTGCCCGCCCCCCAAGTTTTTGCCGCGCCCCCTGGCAGTATCTACTACCTGGAGCAGCCGGCCCCCCTCAA CCAAGAAGAGCCCGAGCTAGAAGATGGCCGGCTCAACGTGTTCCACCGCTGGCGGCTGTTGGGCTATAGCGAGCTCCTAT GGCTGCCTTGGGCCAACTGA
Upstream 100 bases:
>100_bases CCGCCCAGCCCCAGGAGTGGGATCTGGAGATCAAAAACTGGTTCAAGCTGGCGGCTTTTGTGCTGCGCAACCGCACCGTG AAATTGGGGAGGAACGGCCG
Downstream 100 bases:
>100_bases GTTTTGCTTTCAGTCCTTGAATACTTACTCGCAAAAGGAGCCCATCCATGACTTTTCAGATTGCCTACCTCCATCTATTG ACTCCCCTGCACACTGGCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 379; Mature: 378
Protein sequence:
>379_residues MSWFTLSPLDVWMFRDAKPFAPGERAWANSSFPPSGHTLAGAVQAYLGQPLTLRLRGPFLCHDERLYFPAPLHLEDGFPL VPVPWLDERDPYFHCHWDPTRPAPLVSLRPVEEEPERSQSSKKKKTGGYLPFEVVQKALEGKGWDLSQAVKPPLKYEVRP HNTLQVSKRQVREADGYFVETCIRLQPGWSLALSIEGWDPDREAWDPLPLTQEAVLRLGGEGHCALLAPCPKLQEQWQQL QALSQAAFCQAGRALAYLATPGVFIKKVEGRSLCRAWPWEWRLATPHPAHPLTGPLVSVATGKPVAISGRLRVDRPPEQR QMSLPAPQVFAAPPGSIYYLEQPAPLNQEEPELEDGRLNVFHRWRLLGYSELLWLPWAN
Sequences:
>Translated_379_residues MSWFTLSPLDVWMFRDAKPFAPGERAWANSSFPPSGHTLAGAVQAYLGQPLTLRLRGPFLCHDERLYFPAPLHLEDGFPL VPVPWLDERDPYFHCHWDPTRPAPLVSLRPVEEEPERSQSSKKKKTGGYLPFEVVQKALEGKGWDLSQAVKPPLKYEVRP HNTLQVSKRQVREADGYFVETCIRLQPGWSLALSIEGWDPDREAWDPLPLTQEAVLRLGGEGHCALLAPCPKLQEQWQQL QALSQAAFCQAGRALAYLATPGVFIKKVEGRSLCRAWPWEWRLATPHPAHPLTGPLVSVATGKPVAISGRLRVDRPPEQR QMSLPAPQVFAAPPGSIYYLEQPAPLNQEEPELEDGRLNVFHRWRLLGYSELLWLPWAN >Mature_378_residues SWFTLSPLDVWMFRDAKPFAPGERAWANSSFPPSGHTLAGAVQAYLGQPLTLRLRGPFLCHDERLYFPAPLHLEDGFPLV PVPWLDERDPYFHCHWDPTRPAPLVSLRPVEEEPERSQSSKKKKTGGYLPFEVVQKALEGKGWDLSQAVKPPLKYEVRPH NTLQVSKRQVREADGYFVETCIRLQPGWSLALSIEGWDPDREAWDPLPLTQEAVLRLGGEGHCALLAPCPKLQEQWQQLQ ALSQAAFCQAGRALAYLATPGVFIKKVEGRSLCRAWPWEWRLATPHPAHPLTGPLVSVATGKPVAISGRLRVDRPPEQRQ MSLPAPQVFAAPPGSIYYLEQPAPLNQEEPELEDGRLNVFHRWRLLGYSELLWLPWAN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42850; Mature: 42719
Theoretical pI: Translated: 7.28; Mature: 7.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSWFTLSPLDVWMFRDAKPFAPGERAWANSSFPPSGHTLAGAVQAYLGQPLTLRLRGPFL CCEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCEE CHDERLYFPAPLHLEDGFPLVPVPWLDERDPYFHCHWDPTRPAPLVSLRPVEEEPERSQS ECCCCEECCCCEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEECCCCCCHHHHHH SKKKKTGGYLPFEVVQKALEGKGWDLSQAVKPPLKYEVRPHNTLQVSKRQVREADGYFVE HHHHHCCCCCCHHHHHHHHCCCCCCHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCEEEE TCIRLQPGWSLALSIEGWDPDREAWDPLPLTQEAVLRLGGEGHCALLAPCPKLQEQWQQL EEEEECCCCEEEEEEECCCCCHHCCCCCCCCHHHHHHCCCCCCEEEECCCHHHHHHHHHH QALSQAAFCQAGRALAYLATPGVFIKKVEGRSLCRAWPWEWRLATPHPAHPLTGPLVSVA HHHHHHHHHHCCCEEEEEECCCEEEEEECCCHHHHCCCCCEEECCCCCCCCCCCCEEEEC TGKPVAISGRLRVDRPPEQRQMSLPAPQVFAAPPGSIYYLEQPAPLNQEEPELEDGRLNV CCCCEEEECEEECCCCCHHHHCCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCEEEE FHRWRLLGYSELLWLPWAN EEEEEECCCEEEEEEECCC >Mature Secondary Structure SWFTLSPLDVWMFRDAKPFAPGERAWANSSFPPSGHTLAGAVQAYLGQPLTLRLRGPFL CEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCEE CHDERLYFPAPLHLEDGFPLVPVPWLDERDPYFHCHWDPTRPAPLVSLRPVEEEPERSQS ECCCCEECCCCEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEECCCCCCHHHHHH SKKKKTGGYLPFEVVQKALEGKGWDLSQAVKPPLKYEVRPHNTLQVSKRQVREADGYFVE HHHHHCCCCCCHHHHHHHHCCCCCCHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCEEEE TCIRLQPGWSLALSIEGWDPDREAWDPLPLTQEAVLRLGGEGHCALLAPCPKLQEQWQQL EEEEECCCCEEEEEEECCCCCHHCCCCCCCCHHHHHHCCCCCCEEEECCCHHHHHHHHHH QALSQAAFCQAGRALAYLATPGVFIKKVEGRSLCRAWPWEWRLATPHPAHPLTGPLVSVA HHHHHHHHHHCCCEEEEEECCCEEEEEECCCHHHHCCCCCEEECCCCCCCCCCCCEEEEC TGKPVAISGRLRVDRPPEQRQMSLPAPQVFAAPPGSIYYLEQPAPLNQEEPELEDGRLNV CCCCEEEECEEECCCCCHHHHCCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCEEEE FHRWRLLGYSELLWLPWAN EEEEEECCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA