| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608319
Identifier: 86608319
GI number: 86608319
Start: 869033
End: 870856
Strand: Reverse
Name: 86608319
Synonym: CYB_0837
Alternate gene names: NA
Gene position: 870856-869033 (Counterclockwise)
Preceding gene: 86608320
Following gene: 86608318
Centisome position: 28.58
GC content: 52.96
Gene sequence:
>1824_bases ATGCCTAGCAATCGTCCTGCCAACTCCCAACCTTCTCCCTGGCTAGGGCATCCCTTGGATCCCAACCCCAGCCCAGATCC CACAGCGAGCTTTATTGAATATCTGCGTTGGATGAGGGCTCCAGCAACTCCTTTCAAAGACGGAGCCAAAGTCGATCTGG TGCACCAGGCAGAAGCAAAGGCAAACTACGGAGCGCGTCTTCAAGTTCTGAATGCTCGCATCAAACGCATTGCCGGAGAA AAAAACACTTTTCAGGTCACCTGTCCCTGGCGAATTCGGGTGGGTGGAGCCAAAGGCCCGGAGAGCATGCTGCTCCCCGC TTTCGATCCCTTAGGGATCCCTTACCTTCCCAGCTCCACCTTGCGGGGGGTAGCCCGCGCCCAGGCTATTCGAGAGTTGA TGCAGAAGCACAATCTGTCTTGGGAGGAGGCAGATAAAGCAGTGGCACCCTGGCTTGGGCATCTAGAAGCTGAGGACAAA GATAGTGCTGGCAAGGTGATCTTTTTGGATGCCTACCCTGTGCCGACCAGGACTCAAAGACAAGGGGATCCCGATAACTC CAGGTCGGGAGGCTTGGCTGTTGATATTGCCAATAACGTTTGGAGTTGGGATGGCAATAGCTTGAAATATAGCCCAAATC CCAATGTCTTTTTTTCTCTCAAACAGGCCACGTTTTTGATCGGGATCCGCAAAGGCCCAGGCTGCACCGACGAGATGTTA GCCCAAGTGAAAGAATGGCTCATCCGCGGGCTGGAGCAAGGAGTGGGATCCCAAGTCAATACCGGCTACGGTCGGCTGAT TCAAACTGGCAAAACTCTATCTCAATACAAGGGAGAATTCTTGCGGCTGCCTTTTGAGCTGGAGGGTCAGTTGATCCACG GGCGGCAAGTGGTCAACTGGAGACCTGATAAGAACCGGTATGACAACAAATCAATTGCCGAAGTCCGACCGGTAGCCTTT AAGAACATGCTGCGCTACTGGTTTCGAACCTTTGCCCTGGGTGTTTTGCCCGTGAAGCAGGTGCAGGAATGGGAGGGGCA ACTTTTTGGGGCCATCACTCCCCAGCAAAAACATGGCTGGATCCACGTGGATCTTTTGAAGGGGCGAGTAACTCAACCAG AGCCGGAACCCAACCAAGCGGGAAAGGGGAAGCGTGCCGGACGGCAAGAAGGGATCCTCATTCTCAGCCTTTCTGAGGAG TGCCACAACCATGCTTCAAAGGAGAACCAGAAAGCGGTGCAAAAGCTCTTTCGGAATCTGACCTGGATGCTGTTTCACCT GGGAGGTATTGGCCAGGGGGCAAGAAGGCCCTGCTACTCTCGCCAAGACCGCGGTAGAGCTCCTTGGTGGCGGGGATCCA CCCTCATTCCCAACTCCGAAGATTCATTTTGGAATCTGCCAGAGTCGGTAGAGGAATTCCAGAAACTCTTTCAGAAGCGG CTGCGGGGCTTTTTTGAGGCGCTCCAGGTTTTGACTGGGCAGGCCATTGATCCCAGCAATCCCAGGAGCTTTGGTCAGGT CGGCAAAGAAAAGTTGCCTGAAGCTGTGGATGCCCATTGCAGGATTGTAGTCTGCAGCGGCCCAGAAGAGTTTAATAAGC CCTATGCTTTGGCTGTTTTGCACAAGGTAGGCAAGATAGCGCCAGGAAAATACGACAAGTTTCTCTGCGGCGACACAGGC ACGCCGTCCCCTGTTTGGATTGCAGATTTGGATGACTATCAGGTGGTTACCGTTTTTAGGGCAACGGTGAATCCTAGGAA AAGTTATCTTGAACAGCTCAGGAAAAATGCTGATGATTTTGGAATAATCTGGCCCTTGAAGTAG
Upstream 100 bases:
>100_bases TCGACGCGCCTTAGAAATTGGCACCAGCGCTATGTTGCGCGAATTTCGGGAAACGCTTCGCAATTCCTAATACTGCTTTC CATCTTTAGGAGAAGATCAA
Downstream 100 bases:
>100_bases AGATCTTGGAGAATCTCTGGAGGAATAAAATGTCCAAAAAGAGGATCAATGCCAAAGTTCTTAGAAACCTTGTTACAGCT GTGGTCAACGGCTCGATCAC
Product: CRISPR-associated RAMP family protein
Products: NA
Alternate protein names: CRISPR-Associated RAMP Family Protein
Number of amino acids: Translated: 607; Mature: 606
Protein sequence:
>607_residues MPSNRPANSQPSPWLGHPLDPNPSPDPTASFIEYLRWMRAPATPFKDGAKVDLVHQAEAKANYGARLQVLNARIKRIAGE KNTFQVTCPWRIRVGGAKGPESMLLPAFDPLGIPYLPSSTLRGVARAQAIRELMQKHNLSWEEADKAVAPWLGHLEAEDK DSAGKVIFLDAYPVPTRTQRQGDPDNSRSGGLAVDIANNVWSWDGNSLKYSPNPNVFFSLKQATFLIGIRKGPGCTDEML AQVKEWLIRGLEQGVGSQVNTGYGRLIQTGKTLSQYKGEFLRLPFELEGQLIHGRQVVNWRPDKNRYDNKSIAEVRPVAF KNMLRYWFRTFALGVLPVKQVQEWEGQLFGAITPQQKHGWIHVDLLKGRVTQPEPEPNQAGKGKRAGRQEGILILSLSEE CHNHASKENQKAVQKLFRNLTWMLFHLGGIGQGARRPCYSRQDRGRAPWWRGSTLIPNSEDSFWNLPESVEEFQKLFQKR LRGFFEALQVLTGQAIDPSNPRSFGQVGKEKLPEAVDAHCRIVVCSGPEEFNKPYALAVLHKVGKIAPGKYDKFLCGDTG TPSPVWIADLDDYQVVTVFRATVNPRKSYLEQLRKNADDFGIIWPLK
Sequences:
>Translated_607_residues MPSNRPANSQPSPWLGHPLDPNPSPDPTASFIEYLRWMRAPATPFKDGAKVDLVHQAEAKANYGARLQVLNARIKRIAGE KNTFQVTCPWRIRVGGAKGPESMLLPAFDPLGIPYLPSSTLRGVARAQAIRELMQKHNLSWEEADKAVAPWLGHLEAEDK DSAGKVIFLDAYPVPTRTQRQGDPDNSRSGGLAVDIANNVWSWDGNSLKYSPNPNVFFSLKQATFLIGIRKGPGCTDEML AQVKEWLIRGLEQGVGSQVNTGYGRLIQTGKTLSQYKGEFLRLPFELEGQLIHGRQVVNWRPDKNRYDNKSIAEVRPVAF KNMLRYWFRTFALGVLPVKQVQEWEGQLFGAITPQQKHGWIHVDLLKGRVTQPEPEPNQAGKGKRAGRQEGILILSLSEE CHNHASKENQKAVQKLFRNLTWMLFHLGGIGQGARRPCYSRQDRGRAPWWRGSTLIPNSEDSFWNLPESVEEFQKLFQKR LRGFFEALQVLTGQAIDPSNPRSFGQVGKEKLPEAVDAHCRIVVCSGPEEFNKPYALAVLHKVGKIAPGKYDKFLCGDTG TPSPVWIADLDDYQVVTVFRATVNPRKSYLEQLRKNADDFGIIWPLK >Mature_606_residues PSNRPANSQPSPWLGHPLDPNPSPDPTASFIEYLRWMRAPATPFKDGAKVDLVHQAEAKANYGARLQVLNARIKRIAGEK NTFQVTCPWRIRVGGAKGPESMLLPAFDPLGIPYLPSSTLRGVARAQAIRELMQKHNLSWEEADKAVAPWLGHLEAEDKD SAGKVIFLDAYPVPTRTQRQGDPDNSRSGGLAVDIANNVWSWDGNSLKYSPNPNVFFSLKQATFLIGIRKGPGCTDEMLA QVKEWLIRGLEQGVGSQVNTGYGRLIQTGKTLSQYKGEFLRLPFELEGQLIHGRQVVNWRPDKNRYDNKSIAEVRPVAFK NMLRYWFRTFALGVLPVKQVQEWEGQLFGAITPQQKHGWIHVDLLKGRVTQPEPEPNQAGKGKRAGRQEGILILSLSEEC HNHASKENQKAVQKLFRNLTWMLFHLGGIGQGARRPCYSRQDRGRAPWWRGSTLIPNSEDSFWNLPESVEEFQKLFQKRL RGFFEALQVLTGQAIDPSNPRSFGQVGKEKLPEAVDAHCRIVVCSGPEEFNKPYALAVLHKVGKIAPGKYDKFLCGDTGT PSPVWIADLDDYQVVTVFRATVNPRKSYLEQLRKNADDFGIIWPLK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68223; Mature: 68091
Theoretical pI: Translated: 9.92; Mature: 9.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSNRPANSQPSPWLGHPLDPNPSPDPTASFIEYLRWMRAPATPFKDGAKVDLVHQAEAK CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHC ANYGARLQVLNARIKRIAGEKNTFQVTCPWRIRVGGAKGPESMLLPAFDPLGIPYLPSST CCCCCHHHHHHHHHHHHCCCCCEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHH LRGVARAQAIRELMQKHNLSWEEADKAVAPWLGHLEAEDKDSAGKVIFLDAYPVPTRTQR HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCC QGDPDNSRSGGLAVDIANNVWSWDGNSLKYSPNPNVFFSLKQATFLIGIRKGPGCTDEML CCCCCCCCCCCEEEEECCCEECCCCCCEEECCCCCEEEEEECEEEEEEECCCCCCHHHHH AQVKEWLIRGLEQGVGSQVNTGYGRLIQTGKTLSQYKGEFLRLPFELEGQLIHGRQVVNW HHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHCCCEEECCCEECCEEEECEEEEEE RPDKNRYDNKSIAEVRPVAFKNMLRYWFRTFALGVLPVKQVQEWEGQLFGAITPQQKHGW CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCEEECCCCCCCCCC IHVDLLKGRVTQPEPEPNQAGKGKRAGRQEGILILSLSEECHNHASKENQKAVQKLFRNL EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHHHHCCHHHHHHHHHHHHHH TWMLFHLGGIGQGARRPCYSRQDRGRAPWWRGSTLIPNSEDSFWNLPESVEEFQKLFQKR HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH LRGFFEALQVLTGQAIDPSNPRSFGQVGKEKLPEAVDAHCRIVVCSGPEEFNKPYALAVL HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHCCCEEEEEECCHHHHCCCHHHHHH HKVGKIAPGKYDKFLCGDTGTPSPVWIADLDDYQVVTVFRATVNPRKSYLEQLRKNADDF HHHHCCCCCCCCCEEECCCCCCCCEEEEECCCCEEEEEEEHHCCHHHHHHHHHHCCCCCC GIIWPLK EEEECCC >Mature Secondary Structure PSNRPANSQPSPWLGHPLDPNPSPDPTASFIEYLRWMRAPATPFKDGAKVDLVHQAEAK CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHC ANYGARLQVLNARIKRIAGEKNTFQVTCPWRIRVGGAKGPESMLLPAFDPLGIPYLPSST CCCCCHHHHHHHHHHHHCCCCCEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHH LRGVARAQAIRELMQKHNLSWEEADKAVAPWLGHLEAEDKDSAGKVIFLDAYPVPTRTQR HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCC QGDPDNSRSGGLAVDIANNVWSWDGNSLKYSPNPNVFFSLKQATFLIGIRKGPGCTDEML CCCCCCCCCCCEEEEECCCEECCCCCCEEECCCCCEEEEEECEEEEEEECCCCCCHHHHH AQVKEWLIRGLEQGVGSQVNTGYGRLIQTGKTLSQYKGEFLRLPFELEGQLIHGRQVVNW HHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHCCCEEECCCEECCEEEECEEEEEE RPDKNRYDNKSIAEVRPVAFKNMLRYWFRTFALGVLPVKQVQEWEGQLFGAITPQQKHGW CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCEEECCCCCCCCCC IHVDLLKGRVTQPEPEPNQAGKGKRAGRQEGILILSLSEECHNHASKENQKAVQKLFRNL EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHHHHCCHHHHHHHHHHHHHH TWMLFHLGGIGQGARRPCYSRQDRGRAPWWRGSTLIPNSEDSFWNLPESVEEFQKLFQKR HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH LRGFFEALQVLTGQAIDPSNPRSFGQVGKEKLPEAVDAHCRIVVCSGPEEFNKPYALAVL HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHCCCEEEEEECCHHHHCCCHHHHHH HKVGKIAPGKYDKFLCGDTGTPSPVWIADLDDYQVVTVFRATVNPRKSYLEQLRKNADDF HHHHCCCCCCCCCEEECCCCCCCCEEEEECCCCEEEEEEEHHCCHHHHHHHHHHCCCCCC GIIWPLK EEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA