Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

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The map label for this gene is 86608288

Identifier: 86608288

GI number: 86608288

Start: 831482

End: 833314

Strand: Reverse

Name: 86608288

Synonym: CYB_0806

Alternate gene names: NA

Gene position: 833314-831482 (Counterclockwise)

Preceding gene: 86608292

Following gene: 86608286

Centisome position: 27.35

GC content: 63.78

Gene sequence:

>1833_bases
ATGGGACGACGGCAACTCTTGCGCGGGATCCTAATCGGGTTGGGTCTTCTGGCCGCCATGGTGGTGTGGGTTGTCGTATG
GCTGCTCACCCGCAGTCCGGTGGCTTTGTTGCTGGCCCACCCGGAACTGCCGCCAATTGTGGGTTTGGCCCCTCGCTCCG
CACAAGCGCTGCTGGTGTTGGCTGTTCCCCTGGACGAGGTGCAAGCGTTTTGGCAAGCGGCAACTCCTGCCCCCCAGCGA
CGCGCTGCCCGTCAGCAGTGGCAAAAGTTTTTCTCCCCTGAAGGCCCAGGCTGGCTGGGATCCTTGCTGGCCGGGGGATC
CCTTGATTTTGAGCGGGAGGTGCGGCCCTGGCTGGGGAGGAGTACCCTCTTGGCCAGTTTGCCGGAGTGGGGCACTTTGG
TTGCCCTGGAAACGCGGGATGCGGCGCTCTCTCAGTTTGAGCTGAACCTGTTGTGGGAACGGCAGAGCTTGGCCGGGAGG
CCGGTGCAGGTGGACACTTACAAGGGCATTCAGGTGGTGTCTAGCCCGATTCCGGGCCTGCAGGGTTTCTCGGCAGCCGT
TTTCGGCGAGCAATACGTGTTGCTGGCGGAGCAGCCTGCTGCCATTCGGGCTGCAATCGATGCTTGGCAGTTGCCGCAGT
TGTCTCTGGTGGCTCAGCCCTTGTTTCGGCGGGTGATCCAGCCGCTGCGGGAGGCACATGTGGGTTGGGCCTTCTGGCAG
AATCCAGAGGCGGTTTCTCCAGACGGGCTGACGTTGCAGGCGGTAGGGCTGGGGTTGGGGGTGAACTTCCAGGGCTTGGT
GGCCGAAAGTGCTGCCCTCTGGCATGCGCCCGCTGGCTTCTCCTTGCCGGCGGCAGAAGCCTTTCGCCCGCAGATCCTTC
AACATCTGCCGGATGAGACCTTGGCGCTGATTTCCGGAGAGAATCTGGCCTCAGTTTGGCAGAGCCTGGGGCAGATCCAG
CCCCTAAATCCCCTGGGATTGCGGGTGGATCCCGGCCAGTGGCTGCAGCGCTTGCAATCTCAGGTGGCGCTGGACTGGCA
GCGTCTGTTGCCGGAACGGGGAGAGTTTGCCTTTGCCCTTTTGCCCGGCGACGGGGATCCAGCCTGGCTGTGGGTCGGTA
AGCTGCCGGATGAGTCGGTCGCGACAGCGGGACGGAGTCCTTATTTCGACTTGGATGAGCGGGCACGCGCCCAAGGCTGG
CAGGTAATCTCTCTGGCAACGAAGCGCGGCACCGCCACTGCCTGGGCCCAACCGACCACTCCTGCGGGGGAGACGGAGTC
CTTGCCGTCAGAACCCCCGCCGGTGGCGACAGCGGGACGGAGTCCTTACCGCTCTATCCATCGACCGGAGATCCCTGTGT
TGGCAGGCGAGCCGCTGGAAGTCAGTGGGAAAGGAGGATCCGCGTCATTGCAGGCGGCAGAGGCTCTCCCCCAGTCGCGT
CAGCGGCGCGGAGCGCTAACGCTGCCAGGGATCCCGCTGCCGGCACAGGTGTATCATGCCGATCGCAAAGGCTATTCCTA
CCTGGCCTCTTCTTTGGGGGCTCTGGAGACGGCCCTCGCGGATCCCCCCTTGAGTGCAAATCGCGCCTGGCGCAAGTTGG
TGGCTTCCCTGCCCCACCGCAATTTGGGCTATGGCTATGGATCCCTGGGGTTGCTCTTGGAAAGCGAGCTGCCCGACCCG
GTCGCGTCAGCGGCGCGGAGCGCTAAGGGATCCCGCTGGTCATCCACGCGCTTTGCCTTCGCCACCACAGCCCTAGCGGT
TTCTGAAGCTCCCTACCCCGATCGGGGCTGCCAGATTACCCAAATGGGCAAGCTGTTTTGGGAGTGGTATTGA

Upstream 100 bases:

>100_bases
TGAGGGCAGCGCTTCTTCACTAGGCCTGTTCATGCCAGCAGTGCAGAGCAGTAGGGCCTGGGTGTCCGAGCCATGTCTCC
CTCGGTGCAGAGATTGAGAT

Downstream 100 bases:

>100_bases
GGGTCAGACTATCCAGGGATCCCGGCAGTTGGCGTGGATGTATTTGGCCAGGTAGACCTGGTTGCCTGTTTCATTCCACT
CCACAAAGTCGAAGATTTGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 610; Mature: 609

Protein sequence:

>610_residues
MGRRQLLRGILIGLGLLAAMVVWVVVWLLTRSPVALLLAHPELPPIVGLAPRSAQALLVLAVPLDEVQAFWQAATPAPQR
RAARQQWQKFFSPEGPGWLGSLLAGGSLDFEREVRPWLGRSTLLASLPEWGTLVALETRDAALSQFELNLLWERQSLAGR
PVQVDTYKGIQVVSSPIPGLQGFSAAVFGEQYVLLAEQPAAIRAAIDAWQLPQLSLVAQPLFRRVIQPLREAHVGWAFWQ
NPEAVSPDGLTLQAVGLGLGVNFQGLVAESAALWHAPAGFSLPAAEAFRPQILQHLPDETLALISGENLASVWQSLGQIQ
PLNPLGLRVDPGQWLQRLQSQVALDWQRLLPERGEFAFALLPGDGDPAWLWVGKLPDESVATAGRSPYFDLDERARAQGW
QVISLATKRGTATAWAQPTTPAGETESLPSEPPPVATAGRSPYRSIHRPEIPVLAGEPLEVSGKGGSASLQAAEALPQSR
QRRGALTLPGIPLPAQVYHADRKGYSYLASSLGALETALADPPLSANRAWRKLVASLPHRNLGYGYGSLGLLLESELPDP
VASAARSAKGSRWSSTRFAFATTALAVSEAPYPDRGCQITQMGKLFWEWY

Sequences:

>Translated_610_residues
MGRRQLLRGILIGLGLLAAMVVWVVVWLLTRSPVALLLAHPELPPIVGLAPRSAQALLVLAVPLDEVQAFWQAATPAPQR
RAARQQWQKFFSPEGPGWLGSLLAGGSLDFEREVRPWLGRSTLLASLPEWGTLVALETRDAALSQFELNLLWERQSLAGR
PVQVDTYKGIQVVSSPIPGLQGFSAAVFGEQYVLLAEQPAAIRAAIDAWQLPQLSLVAQPLFRRVIQPLREAHVGWAFWQ
NPEAVSPDGLTLQAVGLGLGVNFQGLVAESAALWHAPAGFSLPAAEAFRPQILQHLPDETLALISGENLASVWQSLGQIQ
PLNPLGLRVDPGQWLQRLQSQVALDWQRLLPERGEFAFALLPGDGDPAWLWVGKLPDESVATAGRSPYFDLDERARAQGW
QVISLATKRGTATAWAQPTTPAGETESLPSEPPPVATAGRSPYRSIHRPEIPVLAGEPLEVSGKGGSASLQAAEALPQSR
QRRGALTLPGIPLPAQVYHADRKGYSYLASSLGALETALADPPLSANRAWRKLVASLPHRNLGYGYGSLGLLLESELPDP
VASAARSAKGSRWSSTRFAFATTALAVSEAPYPDRGCQITQMGKLFWEWY
>Mature_609_residues
GRRQLLRGILIGLGLLAAMVVWVVVWLLTRSPVALLLAHPELPPIVGLAPRSAQALLVLAVPLDEVQAFWQAATPAPQRR
AARQQWQKFFSPEGPGWLGSLLAGGSLDFEREVRPWLGRSTLLASLPEWGTLVALETRDAALSQFELNLLWERQSLAGRP
VQVDTYKGIQVVSSPIPGLQGFSAAVFGEQYVLLAEQPAAIRAAIDAWQLPQLSLVAQPLFRRVIQPLREAHVGWAFWQN
PEAVSPDGLTLQAVGLGLGVNFQGLVAESAALWHAPAGFSLPAAEAFRPQILQHLPDETLALISGENLASVWQSLGQIQP
LNPLGLRVDPGQWLQRLQSQVALDWQRLLPERGEFAFALLPGDGDPAWLWVGKLPDESVATAGRSPYFDLDERARAQGWQ
VISLATKRGTATAWAQPTTPAGETESLPSEPPPVATAGRSPYRSIHRPEIPVLAGEPLEVSGKGGSASLQAAEALPQSRQ
RRGALTLPGIPLPAQVYHADRKGYSYLASSLGALETALADPPLSANRAWRKLVASLPHRNLGYGYGSLGLLLESELPDPV
ASAARSAKGSRWSSTRFAFATTALAVSEAPYPDRGCQITQMGKLFWEWY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 66001; Mature: 65870

Theoretical pI: Translated: 7.24; Mature: 7.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRRQLLRGILIGLGLLAAMVVWVVVWLLTRSPVALLLAHPELPPIVGLAPRSAQALLVL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEEEEE
AVPLDEVQAFWQAATPAPQRRAARQQWQKFFSPEGPGWLGSLLAGGSLDFEREVRPWLGR
ECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCHHHHHHHCCH
STLLASLPEWGTLVALETRDAALSQFELNLLWERQSLAGRPVQVDTYKGIQVVSSPIPGL
HHHHHCCCCCCEEEEEECCCHHHHHHHHHEEEEHHHHCCCCEEEECCCCHHEECCCCCCC
QGFSAAVFGEQYVLLAEQPAAIRAAIDAWQLPQLSLVAQPLFRRVIQPLREAHVGWAFWQ
CCCHHHHCCCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEC
NPEAVSPDGLTLQAVGLGLGVNFQGLVAESAALWHAPAGFSLPAAEAFRPQILQHLPDET
CCCCCCCCCCEEEEEEEECCCCCHHHHHHCHHHEECCCCCCCCHHHHHHHHHHHHCCCCC
LALISGENLASVWQSLGQIQPLNPLGLRVDPGQWLQRLQSQVALDWQRLLPERGEFAFAL
EEEECCCHHHHHHHHHCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
LPGDGDPAWLWVGKLPDESVATAGRSPYFDLDERARAQGWQVISLATKRGTATAWAQPTT
ECCCCCCEEEEEECCCCHHHHHCCCCCCCCCHHHHHHCCCEEEEEEECCCCEEECCCCCC
PAGETESLPSEPPPVATAGRSPYRSIHRPEIPVLAGEPLEVSGKGGSASLQAAEALPQSR
CCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEECCCCEEECCCCCCCHHHHHHHHHHHH
QRRGALTLPGIPLPAQVYHADRKGYSYLASSLGALETALADPPLSANRAWRKLVASLPHR
HHCCCEECCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC
NLGYGYGSLGLLLESELPDPVASAARSAKGSRWSSTRFAFATTALAVSEAPYPDRGCQIT
CCCCCCCCHHHEEECCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHH
QMGKLFWEWY
HHHHHHHCCC
>Mature Secondary Structure 
GRRQLLRGILIGLGLLAAMVVWVVVWLLTRSPVALLLAHPELPPIVGLAPRSAQALLVL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEEEEE
AVPLDEVQAFWQAATPAPQRRAARQQWQKFFSPEGPGWLGSLLAGGSLDFEREVRPWLGR
ECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCHHHHHHHCCH
STLLASLPEWGTLVALETRDAALSQFELNLLWERQSLAGRPVQVDTYKGIQVVSSPIPGL
HHHHHCCCCCCEEEEEECCCHHHHHHHHHEEEEHHHHCCCCEEEECCCCHHEECCCCCCC
QGFSAAVFGEQYVLLAEQPAAIRAAIDAWQLPQLSLVAQPLFRRVIQPLREAHVGWAFWQ
CCCHHHHCCCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEC
NPEAVSPDGLTLQAVGLGLGVNFQGLVAESAALWHAPAGFSLPAAEAFRPQILQHLPDET
CCCCCCCCCCEEEEEEEECCCCCHHHHHHCHHHEECCCCCCCCHHHHHHHHHHHHCCCCC
LALISGENLASVWQSLGQIQPLNPLGLRVDPGQWLQRLQSQVALDWQRLLPERGEFAFAL
EEEECCCHHHHHHHHHCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
LPGDGDPAWLWVGKLPDESVATAGRSPYFDLDERARAQGWQVISLATKRGTATAWAQPTT
ECCCCCCEEEEEECCCCHHHHHCCCCCCCCCHHHHHHCCCEEEEEEECCCCEEECCCCCC
PAGETESLPSEPPPVATAGRSPYRSIHRPEIPVLAGEPLEVSGKGGSASLQAAEALPQSR
CCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEECCCCEEECCCCCCCHHHHHHHHHHHH
QRRGALTLPGIPLPAQVYHADRKGYSYLASSLGALETALADPPLSANRAWRKLVASLPHR
HHCCCEECCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC
NLGYGYGSLGLLLESELPDPVASAARSAKGSRWSSTRFAFATTALAVSEAPYPDRGCQIT
CCCCCCCCHHHEEECCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHH
QMGKLFWEWY
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA