| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608288
Identifier: 86608288
GI number: 86608288
Start: 831482
End: 833314
Strand: Reverse
Name: 86608288
Synonym: CYB_0806
Alternate gene names: NA
Gene position: 833314-831482 (Counterclockwise)
Preceding gene: 86608292
Following gene: 86608286
Centisome position: 27.35
GC content: 63.78
Gene sequence:
>1833_bases ATGGGACGACGGCAACTCTTGCGCGGGATCCTAATCGGGTTGGGTCTTCTGGCCGCCATGGTGGTGTGGGTTGTCGTATG GCTGCTCACCCGCAGTCCGGTGGCTTTGTTGCTGGCCCACCCGGAACTGCCGCCAATTGTGGGTTTGGCCCCTCGCTCCG CACAAGCGCTGCTGGTGTTGGCTGTTCCCCTGGACGAGGTGCAAGCGTTTTGGCAAGCGGCAACTCCTGCCCCCCAGCGA CGCGCTGCCCGTCAGCAGTGGCAAAAGTTTTTCTCCCCTGAAGGCCCAGGCTGGCTGGGATCCTTGCTGGCCGGGGGATC CCTTGATTTTGAGCGGGAGGTGCGGCCCTGGCTGGGGAGGAGTACCCTCTTGGCCAGTTTGCCGGAGTGGGGCACTTTGG TTGCCCTGGAAACGCGGGATGCGGCGCTCTCTCAGTTTGAGCTGAACCTGTTGTGGGAACGGCAGAGCTTGGCCGGGAGG CCGGTGCAGGTGGACACTTACAAGGGCATTCAGGTGGTGTCTAGCCCGATTCCGGGCCTGCAGGGTTTCTCGGCAGCCGT TTTCGGCGAGCAATACGTGTTGCTGGCGGAGCAGCCTGCTGCCATTCGGGCTGCAATCGATGCTTGGCAGTTGCCGCAGT TGTCTCTGGTGGCTCAGCCCTTGTTTCGGCGGGTGATCCAGCCGCTGCGGGAGGCACATGTGGGTTGGGCCTTCTGGCAG AATCCAGAGGCGGTTTCTCCAGACGGGCTGACGTTGCAGGCGGTAGGGCTGGGGTTGGGGGTGAACTTCCAGGGCTTGGT GGCCGAAAGTGCTGCCCTCTGGCATGCGCCCGCTGGCTTCTCCTTGCCGGCGGCAGAAGCCTTTCGCCCGCAGATCCTTC AACATCTGCCGGATGAGACCTTGGCGCTGATTTCCGGAGAGAATCTGGCCTCAGTTTGGCAGAGCCTGGGGCAGATCCAG CCCCTAAATCCCCTGGGATTGCGGGTGGATCCCGGCCAGTGGCTGCAGCGCTTGCAATCTCAGGTGGCGCTGGACTGGCA GCGTCTGTTGCCGGAACGGGGAGAGTTTGCCTTTGCCCTTTTGCCCGGCGACGGGGATCCAGCCTGGCTGTGGGTCGGTA AGCTGCCGGATGAGTCGGTCGCGACAGCGGGACGGAGTCCTTATTTCGACTTGGATGAGCGGGCACGCGCCCAAGGCTGG CAGGTAATCTCTCTGGCAACGAAGCGCGGCACCGCCACTGCCTGGGCCCAACCGACCACTCCTGCGGGGGAGACGGAGTC CTTGCCGTCAGAACCCCCGCCGGTGGCGACAGCGGGACGGAGTCCTTACCGCTCTATCCATCGACCGGAGATCCCTGTGT TGGCAGGCGAGCCGCTGGAAGTCAGTGGGAAAGGAGGATCCGCGTCATTGCAGGCGGCAGAGGCTCTCCCCCAGTCGCGT CAGCGGCGCGGAGCGCTAACGCTGCCAGGGATCCCGCTGCCGGCACAGGTGTATCATGCCGATCGCAAAGGCTATTCCTA CCTGGCCTCTTCTTTGGGGGCTCTGGAGACGGCCCTCGCGGATCCCCCCTTGAGTGCAAATCGCGCCTGGCGCAAGTTGG TGGCTTCCCTGCCCCACCGCAATTTGGGCTATGGCTATGGATCCCTGGGGTTGCTCTTGGAAAGCGAGCTGCCCGACCCG GTCGCGTCAGCGGCGCGGAGCGCTAAGGGATCCCGCTGGTCATCCACGCGCTTTGCCTTCGCCACCACAGCCCTAGCGGT TTCTGAAGCTCCCTACCCCGATCGGGGCTGCCAGATTACCCAAATGGGCAAGCTGTTTTGGGAGTGGTATTGA
Upstream 100 bases:
>100_bases TGAGGGCAGCGCTTCTTCACTAGGCCTGTTCATGCCAGCAGTGCAGAGCAGTAGGGCCTGGGTGTCCGAGCCATGTCTCC CTCGGTGCAGAGATTGAGAT
Downstream 100 bases:
>100_bases GGGTCAGACTATCCAGGGATCCCGGCAGTTGGCGTGGATGTATTTGGCCAGGTAGACCTGGTTGCCTGTTTCATTCCACT CCACAAAGTCGAAGATTTGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 610; Mature: 609
Protein sequence:
>610_residues MGRRQLLRGILIGLGLLAAMVVWVVVWLLTRSPVALLLAHPELPPIVGLAPRSAQALLVLAVPLDEVQAFWQAATPAPQR RAARQQWQKFFSPEGPGWLGSLLAGGSLDFEREVRPWLGRSTLLASLPEWGTLVALETRDAALSQFELNLLWERQSLAGR PVQVDTYKGIQVVSSPIPGLQGFSAAVFGEQYVLLAEQPAAIRAAIDAWQLPQLSLVAQPLFRRVIQPLREAHVGWAFWQ NPEAVSPDGLTLQAVGLGLGVNFQGLVAESAALWHAPAGFSLPAAEAFRPQILQHLPDETLALISGENLASVWQSLGQIQ PLNPLGLRVDPGQWLQRLQSQVALDWQRLLPERGEFAFALLPGDGDPAWLWVGKLPDESVATAGRSPYFDLDERARAQGW QVISLATKRGTATAWAQPTTPAGETESLPSEPPPVATAGRSPYRSIHRPEIPVLAGEPLEVSGKGGSASLQAAEALPQSR QRRGALTLPGIPLPAQVYHADRKGYSYLASSLGALETALADPPLSANRAWRKLVASLPHRNLGYGYGSLGLLLESELPDP VASAARSAKGSRWSSTRFAFATTALAVSEAPYPDRGCQITQMGKLFWEWY
Sequences:
>Translated_610_residues MGRRQLLRGILIGLGLLAAMVVWVVVWLLTRSPVALLLAHPELPPIVGLAPRSAQALLVLAVPLDEVQAFWQAATPAPQR RAARQQWQKFFSPEGPGWLGSLLAGGSLDFEREVRPWLGRSTLLASLPEWGTLVALETRDAALSQFELNLLWERQSLAGR PVQVDTYKGIQVVSSPIPGLQGFSAAVFGEQYVLLAEQPAAIRAAIDAWQLPQLSLVAQPLFRRVIQPLREAHVGWAFWQ NPEAVSPDGLTLQAVGLGLGVNFQGLVAESAALWHAPAGFSLPAAEAFRPQILQHLPDETLALISGENLASVWQSLGQIQ PLNPLGLRVDPGQWLQRLQSQVALDWQRLLPERGEFAFALLPGDGDPAWLWVGKLPDESVATAGRSPYFDLDERARAQGW QVISLATKRGTATAWAQPTTPAGETESLPSEPPPVATAGRSPYRSIHRPEIPVLAGEPLEVSGKGGSASLQAAEALPQSR QRRGALTLPGIPLPAQVYHADRKGYSYLASSLGALETALADPPLSANRAWRKLVASLPHRNLGYGYGSLGLLLESELPDP VASAARSAKGSRWSSTRFAFATTALAVSEAPYPDRGCQITQMGKLFWEWY >Mature_609_residues GRRQLLRGILIGLGLLAAMVVWVVVWLLTRSPVALLLAHPELPPIVGLAPRSAQALLVLAVPLDEVQAFWQAATPAPQRR AARQQWQKFFSPEGPGWLGSLLAGGSLDFEREVRPWLGRSTLLASLPEWGTLVALETRDAALSQFELNLLWERQSLAGRP VQVDTYKGIQVVSSPIPGLQGFSAAVFGEQYVLLAEQPAAIRAAIDAWQLPQLSLVAQPLFRRVIQPLREAHVGWAFWQN PEAVSPDGLTLQAVGLGLGVNFQGLVAESAALWHAPAGFSLPAAEAFRPQILQHLPDETLALISGENLASVWQSLGQIQP LNPLGLRVDPGQWLQRLQSQVALDWQRLLPERGEFAFALLPGDGDPAWLWVGKLPDESVATAGRSPYFDLDERARAQGWQ VISLATKRGTATAWAQPTTPAGETESLPSEPPPVATAGRSPYRSIHRPEIPVLAGEPLEVSGKGGSASLQAAEALPQSRQ RRGALTLPGIPLPAQVYHADRKGYSYLASSLGALETALADPPLSANRAWRKLVASLPHRNLGYGYGSLGLLLESELPDPV ASAARSAKGSRWSSTRFAFATTALAVSEAPYPDRGCQITQMGKLFWEWY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 66001; Mature: 65870
Theoretical pI: Translated: 7.24; Mature: 7.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 0.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 0.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRRQLLRGILIGLGLLAAMVVWVVVWLLTRSPVALLLAHPELPPIVGLAPRSAQALLVL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEEEEE AVPLDEVQAFWQAATPAPQRRAARQQWQKFFSPEGPGWLGSLLAGGSLDFEREVRPWLGR ECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCHHHHHHHCCH STLLASLPEWGTLVALETRDAALSQFELNLLWERQSLAGRPVQVDTYKGIQVVSSPIPGL HHHHHCCCCCCEEEEEECCCHHHHHHHHHEEEEHHHHCCCCEEEECCCCHHEECCCCCCC QGFSAAVFGEQYVLLAEQPAAIRAAIDAWQLPQLSLVAQPLFRRVIQPLREAHVGWAFWQ CCCHHHHCCCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEC NPEAVSPDGLTLQAVGLGLGVNFQGLVAESAALWHAPAGFSLPAAEAFRPQILQHLPDET CCCCCCCCCCEEEEEEEECCCCCHHHHHHCHHHEECCCCCCCCHHHHHHHHHHHHCCCCC LALISGENLASVWQSLGQIQPLNPLGLRVDPGQWLQRLQSQVALDWQRLLPERGEFAFAL EEEECCCHHHHHHHHHCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE LPGDGDPAWLWVGKLPDESVATAGRSPYFDLDERARAQGWQVISLATKRGTATAWAQPTT ECCCCCCEEEEEECCCCHHHHHCCCCCCCCCHHHHHHCCCEEEEEEECCCCEEECCCCCC PAGETESLPSEPPPVATAGRSPYRSIHRPEIPVLAGEPLEVSGKGGSASLQAAEALPQSR CCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEECCCCEEECCCCCCCHHHHHHHHHHHH QRRGALTLPGIPLPAQVYHADRKGYSYLASSLGALETALADPPLSANRAWRKLVASLPHR HHCCCEECCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC NLGYGYGSLGLLLESELPDPVASAARSAKGSRWSSTRFAFATTALAVSEAPYPDRGCQIT CCCCCCCCHHHEEECCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHH QMGKLFWEWY HHHHHHHCCC >Mature Secondary Structure GRRQLLRGILIGLGLLAAMVVWVVVWLLTRSPVALLLAHPELPPIVGLAPRSAQALLVL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEEEEE AVPLDEVQAFWQAATPAPQRRAARQQWQKFFSPEGPGWLGSLLAGGSLDFEREVRPWLGR ECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCHHHHHHHCCH STLLASLPEWGTLVALETRDAALSQFELNLLWERQSLAGRPVQVDTYKGIQVVSSPIPGL HHHHHCCCCCCEEEEEECCCHHHHHHHHHEEEEHHHHCCCCEEEECCCCHHEECCCCCCC QGFSAAVFGEQYVLLAEQPAAIRAAIDAWQLPQLSLVAQPLFRRVIQPLREAHVGWAFWQ CCCHHHHCCCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEC NPEAVSPDGLTLQAVGLGLGVNFQGLVAESAALWHAPAGFSLPAAEAFRPQILQHLPDET CCCCCCCCCCEEEEEEEECCCCCHHHHHHCHHHEECCCCCCCCHHHHHHHHHHHHCCCCC LALISGENLASVWQSLGQIQPLNPLGLRVDPGQWLQRLQSQVALDWQRLLPERGEFAFAL EEEECCCHHHHHHHHHCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE LPGDGDPAWLWVGKLPDESVATAGRSPYFDLDERARAQGWQVISLATKRGTATAWAQPTT ECCCCCCEEEEEECCCCHHHHHCCCCCCCCCHHHHHHCCCEEEEEEECCCCEEECCCCCC PAGETESLPSEPPPVATAGRSPYRSIHRPEIPVLAGEPLEVSGKGGSASLQAAEALPQSR CCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEECCCCEEECCCCCCCHHHHHHHHHHHH QRRGALTLPGIPLPAQVYHADRKGYSYLASSLGALETALADPPLSANRAWRKLVASLPHR HHCCCEECCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC NLGYGYGSLGLLLESELPDPVASAARSAKGSRWSSTRFAFATTALAVSEAPYPDRGCQIT CCCCCCCCHHHEEECCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHH QMGKLFWEWY HHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA