| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608208
Identifier: 86608208
GI number: 86608208
Start: 742106
End: 742693
Strand: Direct
Name: 86608208
Synonym: CYB_0723
Alternate gene names: NA
Gene position: 742106-742693 (Clockwise)
Preceding gene: 86608203
Following gene: 86608211
Centisome position: 24.36
GC content: 58.5
Gene sequence:
>588_bases ATGGCTACCGGCGCACAGTCTTCCCCCTCCCAACTCTGGCATGTGTTGGTGATCGATGATGAGCAGGGACGGCGGGCTGT GGCCCTCAGTGCTGCCACCTATTCCATCGGCAGGGATCCCAGCAATGCGATTGTCATCGATTCGGCGGCGGTTTCCCGGC AACACGCGCTGCTGCTGCGGCTACCCCACAAAGATGGCCAATATACCTACCGGCTGCTGGACGGCAATATCGAGGGCAAG CGCAGCACCAACGGCGTCTCGGTGAATGGGCAGAGATGTTTGAGCTGGGATCTCAAGGATGGGGATCAGATCCTGTTGGG GAATCAGGTGCGGATGCAGTACTGCATTCGCCAGTTGTCAGACGAAGATTTTCAGCGGTATCTCCAGTCTGTAAGCTTTC GCAGCGTGAAGGCGGAGGTGGTGGATCGACGCTCCACAACCATGCAGCGGTTTGATCCGCCCTCGATGCAGGCAATTTTG CCCCAAGAGGAGACGACGGAGAGAATTGACGTGAAGCCTCAACGCCGCAATCCGCTGCGGCTGCTGTTCCAGACCCTCTG GGGGCGTTTGAGGGGGAAGCTGAGATAA
Upstream 100 bases:
>100_bases TTGGGCAATGGCTGAGGTGTGGCTTCCAGCCCGCTAACACGAAAGGGGCCTGCACTGCAACTTCGACGGTCAACCCAGCT CCCCCTCAAGGCCCCAGACC
Downstream 100 bases:
>100_bases CTTAACCCTCGGGGATGCCCACCCGTTCTGAGTCTGGGAGCGATGACGCGGTCTCGTCGGTGCTGTCTTTGCGGTCTTGC TCTGACGCTTCTGCCTGCAA
Product: FHA domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 195; Mature: 194
Protein sequence:
>195_residues MATGAQSSPSQLWHVLVIDDEQGRRAVALSAATYSIGRDPSNAIVIDSAAVSRQHALLLRLPHKDGQYTYRLLDGNIEGK RSTNGVSVNGQRCLSWDLKDGDQILLGNQVRMQYCIRQLSDEDFQRYLQSVSFRSVKAEVVDRRSTTMQRFDPPSMQAIL PQEETTERIDVKPQRRNPLRLLFQTLWGRLRGKLR
Sequences:
>Translated_195_residues MATGAQSSPSQLWHVLVIDDEQGRRAVALSAATYSIGRDPSNAIVIDSAAVSRQHALLLRLPHKDGQYTYRLLDGNIEGK RSTNGVSVNGQRCLSWDLKDGDQILLGNQVRMQYCIRQLSDEDFQRYLQSVSFRSVKAEVVDRRSTTMQRFDPPSMQAIL PQEETTERIDVKPQRRNPLRLLFQTLWGRLRGKLR >Mature_194_residues ATGAQSSPSQLWHVLVIDDEQGRRAVALSAATYSIGRDPSNAIVIDSAAVSRQHALLLRLPHKDGQYTYRLLDGNIEGKR STNGVSVNGQRCLSWDLKDGDQILLGNQVRMQYCIRQLSDEDFQRYLQSVSFRSVKAEVVDRRSTTMQRFDPPSMQAILP QEETTERIDVKPQRRNPLRLLFQTLWGRLRGKLR
Specific function: Unknown
COG id: COG1716
COG function: function code T; FOG: FHA domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 GGDEF domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001054 - InterPro: IPR000160 - InterPro: IPR001633 - InterPro: IPR000253 - InterPro: IPR000014 - InterPro: IPR008984 [H]
Pfam domain/function: PF00563 EAL; PF00498 FHA; PF00990 GGDEF [H]
EC number: NA
Molecular weight: Translated: 22209; Mature: 22077
Theoretical pI: Translated: 10.19; Mature: 10.19
Prosite motif: PS50006 FHA_DOMAIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATGAQSSPSQLWHVLVIDDEQGRRAVALSAATYSIGRDPSNAIVIDSAAVSRQHALLLR CCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCEEEEECHHHCCCCEEEEE LPHKDGQYTYRLLDGNIEGKRSTNGVSVNGQRCLSWDLKDGDQILLGNQVRMQYCIRQLS ECCCCCCEEEEEECCCCCCCCCCCCEEECCCEEEEECCCCCCEEEECCHHHHHHHHHHCC DEDFQRYLQSVSFRSVKAEVVDRRSTTMQRFDPPSMQAILPQEETTERIDVKPQRRNPLR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCHHH LLFQTLWGRLRGKLR HHHHHHHHHHCCCCC >Mature Secondary Structure ATGAQSSPSQLWHVLVIDDEQGRRAVALSAATYSIGRDPSNAIVIDSAAVSRQHALLLR CCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCEEEEECHHHCCCCEEEEE LPHKDGQYTYRLLDGNIEGKRSTNGVSVNGQRCLSWDLKDGDQILLGNQVRMQYCIRQLS ECCCCCCEEEEEECCCCCCCCCCCCEEECCCEEEEECCCCCCEEEECCHHHHHHHHHHCC DEDFQRYLQSVSFRSVKAEVVDRRSTTMQRFDPPSMQAILPQEETTERIDVKPQRRNPLR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCHHH LLFQTLWGRLRGKLR HHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]