Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
---|---|
Accession | NC_007776 |
Length | 3,046,682 |
Click here to switch to the map view.
The map label for this gene is maeB [C]
Identifier: 86608102
GI number: 86608102
Start: 623105
End: 624499
Strand: Direct
Name: maeB [C]
Synonym: CYB_0613
Alternate gene names: 86608102
Gene position: 623105-624499 (Clockwise)
Preceding gene: 86608100
Following gene: 86608105
Centisome position: 20.45
GC content: 62.72
Gene sequence:
>1395_bases ATGACAAAACTTACCCCCAGCTCTAGCTATAGCATTGCCCTGCGCATTCGCCTGCTCAACCAGCCGGGAGCCCTAGCCCG CGTCACCCAGGCCATTGCGGAAGTGGGAGGCAGCCTCAGCCAGATCGATCTCATCCACCAATCGGCAGCAGAAACGGTGC GAGAAATCTGTGTAGATGCCGTCAGCAGCGAGCATGCTCAGCAAATTTACACCGCCGTTGCCTCCTTGGCCAATGTGAAG GTGGAGCGGGTGGTGGACCGCACCTTTGAGCTGCACCGCGGGGGAAAGCTGCAGGTGGTGGCCAAAAGCCCCCTGGAGAG CGCCGCCGATCTGGCCATGGCCTACACGCCGGGGGTGGGGCGGGTTTCCCTAGAAATTGCTGCCAACCCCGCCGCGGTCT ATGAGTACACCATCAAGGGCAACAGTGTAGGCATTGTAACCGATGGCAGTGCGGTGCTGGGCTTGGGGAATGTCGGCCCG GAGGCAGCTTTGCCGGTGATGGAGGGGAAGGCGGCGCTGTTCAAGCGCTTTGCCGATATCGATGCCTTTCCTCTGTGCCT GGCCACTCAGGAGGTGGGGGAAATTGTAGAGACGGTGGTGCGCCTGGCGCCGGGATTTGGCGGCTTTAACCTGGAAGACA TCAGCGCCCCTCGCTGCTTTGCCATTGAGTCTCAGCTCAAGGCCCGCCTCAACCTGCCGGTGTTTCACGACGATCAGCAC GGCACCGCCATTGTGGTGCTGGCGGCGCTGCTGAATGCCCTGAAAGTGGTGAAAAAGAGCCTAGACGAGGTGCGCATTGT CCTCAACGGGGCCGGGGCAGCCGGCATTGCCGTGACGCAACTGCTGCGGCGGGCCGGGGCAGCCCACATCCTGGTCTGCG ACCGCCAAGGGATCCTTAGCCGCTCCCGTTCCGATCTCACCCCCGAGAAGGCGGCCATTGCCGTCGAGGAGAAGGGATCC CTGGCGGAAGCCTTGGTGGGAGCGGATGTGTTTATTGGGGTGAGCGTGGCCAATGCCCTGACAGTGGAGATGGTAGAAAA AATGGCACCGGATCCCATCGTCTTTGCCCTGGCCAACCCGGTGCCCGAGATCCAGCCGGAGCTGGTGGGCAATCGGGTGG CAGTGATGGCCACGGGCCGCAGCGACTACCCCAACCAAATCAACAACGTGCTGGCCTTTCCGGGCGTGTTTCGCGGCGCC CTCGACTGCCGCGCCAAGCAGATCAACACCGAGATGTGTGTGGCTGCCGCTCAGGCCATTGCTGCCTTGATCCCTGCCGA AGAGTTGGATCCCCAGTGGATCATCCCCTCGGTCTTCGACGGGCGGGTGGTTCCTCAGGTGGCCGCTGCGGTAATCCAGG CTGCCCGCCAAACCGGCGTGGCCGGGATCCCTTGA
Upstream 100 bases:
>100_bases GGCTCTGCCATCGCCTGGGTGCGGTTGCTGTAGTAGCCCTCCAGCCAGTTGGCCAGGGTGTGCAAGTCGGAAGCGGATTT TTCGTCTACCATAGGGAGCT
Downstream 100 bases:
>100_bases GGGCTACCTAGGGCACCAGGTGACAAGCCACAAAATGCCCCGCGCTCACCTCGCGAAAGGCCGGGGGTGGATCTTGGCCT GTTCCTTCCCTGGGGGGAAC
Product: malate dehydrogenase (oxaloacetate-decarboxylating)
Products: NA
Alternate protein names: NAD-ME [H]
Number of amino acids: Translated: 464; Mature: 463
Protein sequence:
>464_residues MTKLTPSSSYSIALRIRLLNQPGALARVTQAIAEVGGSLSQIDLIHQSAAETVREICVDAVSSEHAQQIYTAVASLANVK VERVVDRTFELHRGGKLQVVAKSPLESAADLAMAYTPGVGRVSLEIAANPAAVYEYTIKGNSVGIVTDGSAVLGLGNVGP EAALPVMEGKAALFKRFADIDAFPLCLATQEVGEIVETVVRLAPGFGGFNLEDISAPRCFAIESQLKARLNLPVFHDDQH GTAIVVLAALLNALKVVKKSLDEVRIVLNGAGAAGIAVTQLLRRAGAAHILVCDRQGILSRSRSDLTPEKAAIAVEEKGS LAEALVGADVFIGVSVANALTVEMVEKMAPDPIVFALANPVPEIQPELVGNRVAVMATGRSDYPNQINNVLAFPGVFRGA LDCRAKQINTEMCVAAAQAIAALIPAEELDPQWIIPSVFDGRVVPQVAAAVIQAARQTGVAGIP
Sequences:
>Translated_464_residues MTKLTPSSSYSIALRIRLLNQPGALARVTQAIAEVGGSLSQIDLIHQSAAETVREICVDAVSSEHAQQIYTAVASLANVK VERVVDRTFELHRGGKLQVVAKSPLESAADLAMAYTPGVGRVSLEIAANPAAVYEYTIKGNSVGIVTDGSAVLGLGNVGP EAALPVMEGKAALFKRFADIDAFPLCLATQEVGEIVETVVRLAPGFGGFNLEDISAPRCFAIESQLKARLNLPVFHDDQH GTAIVVLAALLNALKVVKKSLDEVRIVLNGAGAAGIAVTQLLRRAGAAHILVCDRQGILSRSRSDLTPEKAAIAVEEKGS LAEALVGADVFIGVSVANALTVEMVEKMAPDPIVFALANPVPEIQPELVGNRVAVMATGRSDYPNQINNVLAFPGVFRGA LDCRAKQINTEMCVAAAQAIAALIPAEELDPQWIIPSVFDGRVVPQVAAAVIQAARQTGVAGIP >Mature_463_residues TKLTPSSSYSIALRIRLLNQPGALARVTQAIAEVGGSLSQIDLIHQSAAETVREICVDAVSSEHAQQIYTAVASLANVKV ERVVDRTFELHRGGKLQVVAKSPLESAADLAMAYTPGVGRVSLEIAANPAAVYEYTIKGNSVGIVTDGSAVLGLGNVGPE AALPVMEGKAALFKRFADIDAFPLCLATQEVGEIVETVVRLAPGFGGFNLEDISAPRCFAIESQLKARLNLPVFHDDQHG TAIVVLAALLNALKVVKKSLDEVRIVLNGAGAAGIAVTQLLRRAGAAHILVCDRQGILSRSRSDLTPEKAAIAVEEKGSL AEALVGADVFIGVSVANALTVEMVEKMAPDPIVFALANPVPEIQPELVGNRVAVMATGRSDYPNQINNVLAFPGVFRGAL DCRAKQINTEMCVAAAQAIAALIPAEELDPQWIIPSVFDGRVVPQVAAAVIQAARQTGVAGIP
Specific function: In addition to the NAD-dependent oxidative decarboxylation of L-malate, the enzyme catalyzes the decarboxylation of oxaloacetate [H]
COG id: COG0281
COG function: function code C; Malic enzyme
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the malic enzymes family [H]
Homologues:
Organism=Homo sapiens, GI4505143, Length=385, Percent_Identity=25.974025974026, Blast_Score=96, Evalue=1e-19, Organism=Homo sapiens, GI62420882, Length=385, Percent_Identity=26.2337662337662, Blast_Score=85, Evalue=1e-16, Organism=Homo sapiens, GI62420880, Length=385, Percent_Identity=26.2337662337662, Blast_Score=85, Evalue=1e-16, Organism=Homo sapiens, GI239049447, Length=385, Percent_Identity=26.2337662337662, Blast_Score=85, Evalue=1e-16, Organism=Homo sapiens, GI4505145, Length=359, Percent_Identity=25.9052924791086, Blast_Score=73, Evalue=7e-13, Organism=Escherichia coli, GI1788806, Length=391, Percent_Identity=48.849104859335, Blast_Score=353, Evalue=1e-98, Organism=Escherichia coli, GI87081919, Length=281, Percent_Identity=27.7580071174377, Blast_Score=79, Evalue=7e-16, Organism=Caenorhabditis elegans, GI17537199, Length=405, Percent_Identity=26.9135802469136, Blast_Score=86, Evalue=6e-17, Organism=Saccharomyces cerevisiae, GI6322823, Length=280, Percent_Identity=31.7857142857143, Blast_Score=94, Evalue=7e-20, Organism=Drosophila melanogaster, GI24646388, Length=390, Percent_Identity=27.6923076923077, Blast_Score=90, Evalue=4e-18, Organism=Drosophila melanogaster, GI24646386, Length=390, Percent_Identity=27.6923076923077, Blast_Score=89, Evalue=4e-18, Organism=Drosophila melanogaster, GI21356279, Length=442, Percent_Identity=25.7918552036199, Blast_Score=82, Evalue=5e-16, Organism=Drosophila melanogaster, GI281362672, Length=442, Percent_Identity=25.7918552036199, Blast_Score=82, Evalue=6e-16, Organism=Drosophila melanogaster, GI281362674, Length=442, Percent_Identity=25.7918552036199, Blast_Score=82, Evalue=6e-16, Organism=Drosophila melanogaster, GI78707242, Length=358, Percent_Identity=25.6983240223464, Blast_Score=81, Evalue=2e-15, Organism=Drosophila melanogaster, GI78707238, Length=358, Percent_Identity=25.6983240223464, Blast_Score=81, Evalue=2e-15, Organism=Drosophila melanogaster, GI78707240, Length=358, Percent_Identity=25.6983240223464, Blast_Score=81, Evalue=2e-15, Organism=Drosophila melanogaster, GI78707232, Length=435, Percent_Identity=23.9080459770115, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI281363503, Length=435, Percent_Identity=23.9080459770115, Blast_Score=79, Evalue=5e-15, Organism=Drosophila melanogaster, GI281363505, Length=435, Percent_Identity=23.9080459770115, Blast_Score=79, Evalue=6e-15, Organism=Drosophila melanogaster, GI78707236, Length=435, Percent_Identity=23.9080459770115, Blast_Score=79, Evalue=6e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015884 - InterPro: IPR012301 - InterPro: IPR012302 - InterPro: IPR001891 - InterPro: IPR016040 [H]
Pfam domain/function: PF00390 malic; PF03949 Malic_M [H]
EC number: =1.1.1.38 [H]
Molecular weight: Translated: 48615; Mature: 48484
Theoretical pI: Translated: 5.31; Mature: 5.31
Prosite motif: PS00331 MALIC_ENZYMES
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKLTPSSSYSIALRIRLLNQPGALARVTQAIAEVGGSLSQIDLIHQSAAETVREICVDA CCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH VSSEHAQQIYTAVASLANVKVERVVDRTFELHRGGKLQVVAKSPLESAADLAMAYTPGVG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHEEECCCCC RVSLEIAANPAAVYEYTIKGNSVGIVTDGSAVLGLGNVGPEAALPVMEGKAALFKRFADI EEEEEEECCCCEEEEEEEECCEEEEEECCCEEEEECCCCCHHCCCHHCCHHHHHHHHHCC DAFPLCLATQEVGEIVETVVRLAPGFGGFNLEDISAPRCFAIESQLKARLNLPVFHDDQH CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEHHHHHHHCCCCEEECCCC GTAIVVLAALLNALKVVKKSLDEVRIVLNGAGAAGIAVTQLLRRAGAAHILVCDRQGILS CHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCHHHH RSRSDLTPEKAAIAVEEKGSLAEALVGADVFIGVSVANALTVEMVEKMAPDPIVFALANP CCCCCCCCCHHEEEEECCCCHHHHHHCCHHEEEHHHHHHHHHHHHHHHCCCCEEEEECCC VPEIQPELVGNRVAVMATGRSDYPNQINNVLAFPGVFRGALDCRAKQINTEMCVAAAQAI CCCCCHHHCCCEEEEEEECCCCCCHHHHHHEECCHHHHHHHHHHHHHCCHHHHHHHHHHH AALIPAEELDPQWIIPSVFDGRVVPQVAAAVIQAARQTGVAGIP HHHCCHHHCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure TKLTPSSSYSIALRIRLLNQPGALARVTQAIAEVGGSLSQIDLIHQSAAETVREICVDA CCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH VSSEHAQQIYTAVASLANVKVERVVDRTFELHRGGKLQVVAKSPLESAADLAMAYTPGVG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHEEECCCCC RVSLEIAANPAAVYEYTIKGNSVGIVTDGSAVLGLGNVGPEAALPVMEGKAALFKRFADI EEEEEEECCCCEEEEEEEECCEEEEEECCCEEEEECCCCCHHCCCHHCCHHHHHHHHHCC DAFPLCLATQEVGEIVETVVRLAPGFGGFNLEDISAPRCFAIESQLKARLNLPVFHDDQH CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEHHHHHHHCCCCEEECCCC GTAIVVLAALLNALKVVKKSLDEVRIVLNGAGAAGIAVTQLLRRAGAAHILVCDRQGILS CHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCHHHH RSRSDLTPEKAAIAVEEKGSLAEALVGADVFIGVSVANALTVEMVEKMAPDPIVFALANP CCCCCCCCCHHEEEEECCCCHHHHHHCCHHEEEHHHHHHHHHHHHHHHCCCCEEEEECCC VPEIQPELVGNRVAVMATGRSDYPNQINNVLAFPGVFRGALDCRAKQINTEMCVAAAQAI CCCCCHHHCCCEEEEEEECCCCCCHHHHHHEECCHHHHHHHHHHHHHCCHHHHHHHHHHH AALIPAEELDPQWIIPSVFDGRVVPQVAAAVIQAARQTGVAGIP HHHCCHHHCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2644282 [H]