Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

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The map label for this gene is 86607594

Identifier: 86607594

GI number: 86607594

Start: 107841

End: 108458

Strand: Reverse

Name: 86607594

Synonym: CYB_0092

Alternate gene names: NA

Gene position: 108458-107841 (Counterclockwise)

Preceding gene: 86607595

Following gene: 86607593

Centisome position: 3.56

GC content: 59.22

Gene sequence:

>618_bases
ATGAAAGACCCGAAGGGCAATTCTACTGCGGATCCCTCTTGGCGGGCGCTGATTCAGGCGGCACTGCACCGTAACCGTAG
CGATCCCAGTGTGCGGTATTTGCAATTGGCCACGGTGGATCCCCAGGGGCATCCGCGCAACCGCACGGTCGTTTTCCGGG
GGTTTTTGGGCGATACCGACCGCATTCAATTGGCGGTGGATAGTCGCAGCGAGAAGATCCGACAAATTGCCCACTGCCCC
CAAGCCCAGATCTGCTGGTATTTCTGCAAAACCCGCGAGCAATTCCGCATCGCTGGCACCCTTGAGGCCATCGCCGCGGA
TCATCCGGATCCCCAAGCCCAGCGCCAGCGGCAGCAGTTGTGGCAACAGATATCGGAAAAAGGACGGCTCCTCTGGTTTT
GGCCGGAACCCAAAGGGCCGCTCGCCCCGCCAGAGGCTTTTATCCAGGAGTTGCCCAAAGAGAAAGATCTGCTGCCTCCG
CAGACCTTTGTGGCTTTACTGCTGGAGCCAACGGAGGTGGATCACCTACAGCTTAAGGGGGATCAGATCTATCCCCAATT
GCGGACGGTGTACGAGCGCACTTCCAAAGGGTGGCAGCGTCGGGCCGTGAATCCCTGA

Upstream 100 bases:

>100_bases
TCTCCAGAGACTCCCAATCTGAGGCTTCTCCACCCCCTAGCTGATCGCGTCAGGGAGAGAAAACCCCAATCCCGGCTTGC
TTGCACCTTGCGAAAAACGG

Downstream 100 bases:

>100_bases
AGGCGATCCAAACTTGCTTAGCCTGGTCTGGAGTGGGGGATCCCTTATTCCTTGTTCCTCCAAAGCACAGGGAATAGAGG
AATGGACGTGTTAACGTAGC

Product: pyridoxamine 5'-phosphate oxidase family protein

Products: NA

Alternate protein names: Pyridoxamine Phosphate Oxidase

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MKDPKGNSTADPSWRALIQAALHRNRSDPSVRYLQLATVDPQGHPRNRTVVFRGFLGDTDRIQLAVDSRSEKIRQIAHCP
QAQICWYFCKTREQFRIAGTLEAIAADHPDPQAQRQRQQLWQQISEKGRLLWFWPEPKGPLAPPEAFIQELPKEKDLLPP
QTFVALLLEPTEVDHLQLKGDQIYPQLRTVYERTSKGWQRRAVNP

Sequences:

>Translated_205_residues
MKDPKGNSTADPSWRALIQAALHRNRSDPSVRYLQLATVDPQGHPRNRTVVFRGFLGDTDRIQLAVDSRSEKIRQIAHCP
QAQICWYFCKTREQFRIAGTLEAIAADHPDPQAQRQRQQLWQQISEKGRLLWFWPEPKGPLAPPEAFIQELPKEKDLLPP
QTFVALLLEPTEVDHLQLKGDQIYPQLRTVYERTSKGWQRRAVNP
>Mature_205_residues
MKDPKGNSTADPSWRALIQAALHRNRSDPSVRYLQLATVDPQGHPRNRTVVFRGFLGDTDRIQLAVDSRSEKIRQIAHCP
QAQICWYFCKTREQFRIAGTLEAIAADHPDPQAQRQRQQLWQQISEKGRLLWFWPEPKGPLAPPEAFIQELPKEKDLLPP
QTFVALLLEPTEVDHLQLKGDQIYPQLRTVYERTSKGWQRRAVNP

Specific function: Unknown

COG id: COG5135

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23704; Mature: 23704

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDPKGNSTADPSWRALIQAALHRNRSDPSVRYLQLATVDPQGHPRNRTVVFRGFLGDTD
CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCC
RIQLAVDSRSEKIRQIAHCPQAQICWYFCKTREQFRIAGTLEAIAADHPDPQAQRQRQQL
EEEEEECCHHHHHHHHHCCCCHHHHHHHHHCCCCEEHHHHHHHHHCCCCCHHHHHHHHHH
WQQISEKGRLLWFWPEPKGPLAPPEAFIQELPKEKDLLPPQTFVALLLEPTEVDHLQLKG
HHHHHHCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCEEEECC
DQIYPQLRTVYERTSKGWQRRAVNP
CHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKDPKGNSTADPSWRALIQAALHRNRSDPSVRYLQLATVDPQGHPRNRTVVFRGFLGDTD
CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCC
RIQLAVDSRSEKIRQIAHCPQAQICWYFCKTREQFRIAGTLEAIAADHPDPQAQRQRQQL
EEEEEECCHHHHHHHHHCCCCHHHHHHHHHCCCCEEHHHHHHHHHCCCCCHHHHHHHHHH
WQQISEKGRLLWFWPEPKGPLAPPEAFIQELPKEKDLLPPQTFVALLLEPTEVDHLQLKG
HHHHHHCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCEEEECC
DQIYPQLRTVYERTSKGWQRRAVNP
CHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA