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The map label for this gene is ydcM [C]

Identifier: 86607544

GI number: 86607544

Start: 52431

End: 53648

Strand: Reverse

Name: ydcM [C]

Synonym: CYB_0041

Alternate gene names: 86607544

Gene position: 53648-52431 (Counterclockwise)

Preceding gene: 86607545

Following gene: 86607534

Centisome position: 1.76

GC content: 55.17

Gene sequence:

>1218_bases
ATGAGCCAAGTCCTGACCATATCCTGTAAGCTCAAGGTAGCCCAGTCGCAAGCCGCCAAATTGGACGCGACGATGGAGGC
TTTTGGCCAAGCCTTGAACTGGGTCAACCAGAACACGCCGGAGAAGATCGTCAACGCGGTCAAACTGCAATCCCTTTGCT
ACTACGAGATTCGAGCCCGGTTCGGCTTGTCCAGTAACTTGGCTCAACAGGTGTGCAGACGGGTAGCGGGTTCCCGCAAA
GTGGCTAAGCAGAAAAAGCGTCCCGTCAAGGAGTTTAAGAGCGGCTTTGTTACCTACGACGCACGCATCTTCTCGTTCCG
TCAAAAAGACTGGACGGTGTCGCTGACCACGGTGGAAGGGAGAGAACGCTTTGAACTGGCCATTGGCAACTACCAGCGTG
GGATGCTGGCTGGTTCCAACCCCAAATCTGCCACCCTGGTCCAGCGGAAGGATGGCTCCTACTACATCCAGATTTGCGTA
GAGAAAAAACCACCCAAGCAACAAGATACCGACAAGGTGATCGGGGTGGACTTGGGAAGGACGGATATTGCTCATACGTC
AGAGGGGGACAACTGGAATGGACAGCAGTTGAACAGAGTCCGCGACCACTACTCCAAGCTGAGGGCGGCACTCCAACGCA
AAGCCAGTAAGGGCACACGCAGTTCGCGGCGCAGATGCAGAGAACTGTTGCAACGGCTGTCTGGCAAGGAGAGACGCTTT
CAGTCGCGTCAGCGTTGCGTAGCAAAAACGTGGGTCAATCATCGCATCTCCAAAGCTATTGTCTCTAGGGCAAAAGCTAC
CAACAGCGCTATCGCTCTGGAAGACCTGACAGGGATCCGGGAAAGGGTCAATCAACAGCCACGCAGCAAAACCGAAAGGC
GCAGGGCCAACAGTTGGGCGTTCTACCAACTGAGGCAGTTTCTGGAATACAAGGCTCTGCGTGCGGGGGTTGCTCTGATT
CTTGTTCCGCCTGCCTACACGTCGCAGACCTGCCACCGGTGTTTGCACATCCATCCCGACCCTGCGCAATCCTATCGCAG
TGGTAAGTCGTTCAAGTGTGGGCACTGTGGATGGGAAGGGGATGCGGATTTGAATGGTGCAAACGTAATTGCGCTCTTGG
GGGCTGTCGTAAACCAGCCTAGAGGTCCGGGCTTGTTTTGTTCTCTGGTAGAGCAGAACAGGCTCAGGGCTACTGAAAGC
CCGCTCCGTATCGCTTAG

Upstream 100 bases:

>100_bases
TCTCTCTCAAATAGATTCAGCTAGAAATCGCAGGAGCCCCGCACTGTACCCGTAGGGTCGGTGTCGGGAGGAATGCGCTT
TGATGAAGTACAATGAACTT

Downstream 100 bases:

>100_bases
CGGTCGGAGCCGGGTAGTTTACAGTAACTGCAATCACCATCCCTCGCCATCTTCAGGCCAAACTCTCGCAGAGCGGGCAA
GAAATTTTTGTTTTCGTGAT

Product: ISSoc1, transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MSQVLTISCKLKVAQSQAAKLDATMEAFGQALNWVNQNTPEKIVNAVKLQSLCYYEIRARFGLSSNLAQQVCRRVAGSRK
VAKQKKRPVKEFKSGFVTYDARIFSFRQKDWTVSLTTVEGRERFELAIGNYQRGMLAGSNPKSATLVQRKDGSYYIQICV
EKKPPKQQDTDKVIGVDLGRTDIAHTSEGDNWNGQQLNRVRDHYSKLRAALQRKASKGTRSSRRRCRELLQRLSGKERRF
QSRQRCVAKTWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKTERRRANSWAFYQLRQFLEYKALRAGVALI
LVPPAYTSQTCHRCLHIHPDPAQSYRSGKSFKCGHCGWEGDADLNGANVIALLGAVVNQPRGPGLFCSLVEQNRLRATES
PLRIA

Sequences:

>Translated_405_residues
MSQVLTISCKLKVAQSQAAKLDATMEAFGQALNWVNQNTPEKIVNAVKLQSLCYYEIRARFGLSSNLAQQVCRRVAGSRK
VAKQKKRPVKEFKSGFVTYDARIFSFRQKDWTVSLTTVEGRERFELAIGNYQRGMLAGSNPKSATLVQRKDGSYYIQICV
EKKPPKQQDTDKVIGVDLGRTDIAHTSEGDNWNGQQLNRVRDHYSKLRAALQRKASKGTRSSRRRCRELLQRLSGKERRF
QSRQRCVAKTWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKTERRRANSWAFYQLRQFLEYKALRAGVALI
LVPPAYTSQTCHRCLHIHPDPAQSYRSGKSFKCGHCGWEGDADLNGANVIALLGAVVNQPRGPGLFCSLVEQNRLRATES
PLRIA
>Mature_404_residues
SQVLTISCKLKVAQSQAAKLDATMEAFGQALNWVNQNTPEKIVNAVKLQSLCYYEIRARFGLSSNLAQQVCRRVAGSRKV
AKQKKRPVKEFKSGFVTYDARIFSFRQKDWTVSLTTVEGRERFELAIGNYQRGMLAGSNPKSATLVQRKDGSYYIQICVE
KKPPKQQDTDKVIGVDLGRTDIAHTSEGDNWNGQQLNRVRDHYSKLRAALQRKASKGTRSSRRRCRELLQRLSGKERRFQ
SRQRCVAKTWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKTERRRANSWAFYQLRQFLEYKALRAGVALIL
VPPAYTSQTCHRCLHIHPDPAQSYRSGKSFKCGHCGWEGDADLNGANVIALLGAVVNQPRGPGLFCSLVEQNRLRATESP
LRIA

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=241, Percent_Identity=28.2157676348548, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 45781; Mature: 45650

Theoretical pI: Translated: 10.96; Mature: 10.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQVLTISCKLKVAQSQAAKLDATMEAFGQALNWVNQNTPEKIVNAVKLQSLCYYEIRAR
CCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRVAGSRKVAKQKKRPVKEFKSGFVTYDARIFSFRQKDWTVSLTTVEG
CCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHCCCEEEEHHHEEEECCCEEEEEEEECC
RERFELAIGNYQRGMLAGSNPKSATLVQRKDGSYYIQICVEKKPPKQQDTDKVIGVDLGR
CCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEECCC
TDIAHTSEGDNWNGQQLNRVRDHYSKLRAALQRKASKGTRSSRRRCRELLQRLSGKERRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHH
QSRQRCVAKTWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKTERRRANSWA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCHHHHHHHHHCCCHH
FYQLRQFLEYKALRAGVALILVPPAYTSQTCHRCLHIHPDPAQSYRSGKSFKCGHCGWEG
HHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHEECCCCHHHHHCCCCCCCCCCCCCCC
DADLNGANVIALLGAVVNQPRGPGLFCSLVEQNRLRATESPLRIA
CCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SQVLTISCKLKVAQSQAAKLDATMEAFGQALNWVNQNTPEKIVNAVKLQSLCYYEIRAR
CCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRVAGSRKVAKQKKRPVKEFKSGFVTYDARIFSFRQKDWTVSLTTVEG
CCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHCCCEEEEHHHEEEECCCEEEEEEEECC
RERFELAIGNYQRGMLAGSNPKSATLVQRKDGSYYIQICVEKKPPKQQDTDKVIGVDLGR
CCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEECCC
TDIAHTSEGDNWNGQQLNRVRDHYSKLRAALQRKASKGTRSSRRRCRELLQRLSGKERRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHH
QSRQRCVAKTWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKTERRRANSWA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCHHHHHHHHHCCCHH
FYQLRQFLEYKALRAGVALILVPPAYTSQTCHRCLHIHPDPAQSYRSGKSFKCGHCGWEG
HHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHEECCCCHHHHHCCCCCCCCCCCCCCC
DADLNGANVIALLGAVVNQPRGPGLFCSLVEQNRLRATESPLRIA
CCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]