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The map label for this gene is yjiR [C]

Identifier: 86360919

GI number: 86360919

Start: 197951

End: 199336

Strand: Reverse

Name: yjiR [C]

Synonym: RHE_PF00188

Alternate gene names: 86360919

Gene position: 199336-197951 (Counterclockwise)

Preceding gene: 86360921

Following gene: 86360918

Centisome position: 31.02

GC content: 65.15

Gene sequence:

>1386_bases
ATGACAAATTGGCGCCCTGATCCCTCGCAACTCCGTCGGCCTGCCTATCTCTCGCTGGCCGAGCAGATCGCCAATGCGAT
CACCGACGGCAAGCTCTCCGACGGCACGCAGTTGCCGCCGCATCGCAAGCTGGCGGATGATCTGCATCTTTCCGTGCAGA
CGGTCAGCCGCGCCTATGACGAACTGAGCCGCCGGGGGCTGATATCGGGTGAGATCGGACGCGGCAGCTTCGTGCAGACG
CGGCCGCGCGAGCCGGAGCCGCCTTATCTGCCGGAACGACTGGGGGAGGTGATCGATCTTTCGATCCTGAAACCGGTGTG
CGAGCAGATCCATCTGGAAAGGCTGCGCCAGGCCTTTGGCTGGCTCTCCGAGAATCTGCCGTCCAGCTCGGCCCTGTCTT
TCCGGCCGAACATGGTCTTTCCTCGCCATCGCGTTGTTGCCACGGAATGGTTGGCGCGCTGCGGGATCGACGTATCGCCG
TTGAACGTCAGCCTGACGAATGGCGCGACCTCGGGCATGACGGTGGCGCTAATGAGTGTCGCCCCGCCCGGTTCGACCAT
TGCCACCGAGGCGATCAGCCATCATACGCTGGTGCCGCTGTCCACCTATCTCGGCCTGCATCTCGAGGGGCTGGCGATCG
ACGAGGAGGGGATGATCCCCGAAGCGCTGGACGAGGCCTGTCGGACGGGGCCGATCCGGGCGATTTTCCTGCAGCCGTCG
GTGATCAATCCGATGGCGGCGCTGATGAGCGCAGAGCGCCGGCAGGCGCTCGCCACAGTCGCCGCCAAGCACGACATAGC
GATCATCGAAAACGACATTCTCGGGCCGATGGTCGAGGACCGCGCGCCGCCAATGGCCGCCTTCGCGCCGGAGCGGACGC
TCTATGTCACGAGCTTCACGAAGATCACCGTTCCCGGCCTCAGGATCGGTTATCTCGTGGCGCCCGACCGCTATGTCGCC
GCCGTTGCCAACCGCCATCTCGTCTCCAGTTGGATGGCGACGCCGGCTATGGCCGAAATCGCCACGCGCTGGGTCAGCGA
CGGCACGGCGATGGAACTGGTCAACTGGCAGCGCCGCGCTCTTGTTGGGCGCCATGCGATCGCGGCGGAGATGCTGGCCG
GCCTGTCCTATCGAACGCACCCGCAAAGCCTACATGTATGGCTGCCGCTGTCCGGCAGCCATACGGAGGATGGTTTCGTG
TCACAGGCAAGGCTGCGCGGCGTGGCGATCGCGCCGGGCAAATCCTTCCACACCGCCGATCACGGCTGGACGCCGGCGGT
GCGCATCTCGCTCGGCTCGACGACGGAAGGCGAGCTGCGAACCGGACTCGGGATCGTTGCCTCACTGGCGCAGGGAAATC
CGGAAGAGCTGCTGCTCGCGATTTGA

Upstream 100 bases:

>100_bases
GAGCTTTCTTTAGAAAGAAATCATTTCAAACGAGGCGAAAAGACAATGGAAGCGCATTTTGGCATTGTCAATTGAACTGA
TTTTCAGCAGTGTTGAAATC

Downstream 100 bases:

>100_bases
GGCGGGCGCCTCATTTGCCGGCAGGTGCAGAATAATTGTCATGATATTATTTTACGAATTGACATGATTTTCGTGGACCG
TCATCGTTAGGTCATTGCTT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 461; Mature: 460

Protein sequence:

>461_residues
MTNWRPDPSQLRRPAYLSLAEQIANAITDGKLSDGTQLPPHRKLADDLHLSVQTVSRAYDELSRRGLISGEIGRGSFVQT
RPREPEPPYLPERLGEVIDLSILKPVCEQIHLERLRQAFGWLSENLPSSSALSFRPNMVFPRHRVVATEWLARCGIDVSP
LNVSLTNGATSGMTVALMSVAPPGSTIATEAISHHTLVPLSTYLGLHLEGLAIDEEGMIPEALDEACRTGPIRAIFLQPS
VINPMAALMSAERRQALATVAAKHDIAIIENDILGPMVEDRAPPMAAFAPERTLYVTSFTKITVPGLRIGYLVAPDRYVA
AVANRHLVSSWMATPAMAEIATRWVSDGTAMELVNWQRRALVGRHAIAAEMLAGLSYRTHPQSLHVWLPLSGSHTEDGFV
SQARLRGVAIAPGKSFHTADHGWTPAVRISLGSTTEGELRTGLGIVASLAQGNPEELLLAI

Sequences:

>Translated_461_residues
MTNWRPDPSQLRRPAYLSLAEQIANAITDGKLSDGTQLPPHRKLADDLHLSVQTVSRAYDELSRRGLISGEIGRGSFVQT
RPREPEPPYLPERLGEVIDLSILKPVCEQIHLERLRQAFGWLSENLPSSSALSFRPNMVFPRHRVVATEWLARCGIDVSP
LNVSLTNGATSGMTVALMSVAPPGSTIATEAISHHTLVPLSTYLGLHLEGLAIDEEGMIPEALDEACRTGPIRAIFLQPS
VINPMAALMSAERRQALATVAAKHDIAIIENDILGPMVEDRAPPMAAFAPERTLYVTSFTKITVPGLRIGYLVAPDRYVA
AVANRHLVSSWMATPAMAEIATRWVSDGTAMELVNWQRRALVGRHAIAAEMLAGLSYRTHPQSLHVWLPLSGSHTEDGFV
SQARLRGVAIAPGKSFHTADHGWTPAVRISLGSTTEGELRTGLGIVASLAQGNPEELLLAI
>Mature_460_residues
TNWRPDPSQLRRPAYLSLAEQIANAITDGKLSDGTQLPPHRKLADDLHLSVQTVSRAYDELSRRGLISGEIGRGSFVQTR
PREPEPPYLPERLGEVIDLSILKPVCEQIHLERLRQAFGWLSENLPSSSALSFRPNMVFPRHRVVATEWLARCGIDVSPL
NVSLTNGATSGMTVALMSVAPPGSTIATEAISHHTLVPLSTYLGLHLEGLAIDEEGMIPEALDEACRTGPIRAIFLQPSV
INPMAALMSAERRQALATVAAKHDIAIIENDILGPMVEDRAPPMAAFAPERTLYVTSFTKITVPGLRIGYLVAPDRYVAA
VANRHLVSSWMATPAMAEIATRWVSDGTAMELVNWQRRALVGRHAIAAEMLAGLSYRTHPQSLHVWLPLSGSHTEDGFVS
QARLRGVAIAPGKSFHTADHGWTPAVRISLGSTTEGELRTGLGIVASLAQGNPEELLLAI

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=317, Percent_Identity=21.7665615141956, Blast_Score=80, Evalue=5e-15,
Organism=Homo sapiens, GI33469970, Length=317, Percent_Identity=21.7665615141956, Blast_Score=80, Evalue=5e-15,
Organism=Escherichia coli, GI1790797, Length=359, Percent_Identity=27.2980501392758, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1787710, Length=444, Percent_Identity=23.8738738738739, Blast_Score=105, Evalue=4e-24,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 50056; Mature: 49925

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNWRPDPSQLRRPAYLSLAEQIANAITDGKLSDGTQLPPHRKLADDLHLSVQTVSRAYD
CCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
ELSRRGLISGEIGRGSFVQTRPREPEPPYLPERLGEVIDLSILKPVCEQIHLERLRQAFG
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WLSENLPSSSALSFRPNMVFPRHRVVATEWLARCGIDVSPLNVSLTNGATSGMTVALMSV
HHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEEEEEE
APPGSTIATEAISHHTLVPLSTYLGLHLEGLAIDEEGMIPEALDEACRTGPIRAIFLQPS
CCCCCHHHHHHHCCCCEEHHHHHHCCEEEEEEECCCCCCHHHHHHHHCCCCEEEEEECCC
VINPMAALMSAERRQALATVAAKHDIAIIENDILGPMVEDRAPPMAAFAPERTLYVTSFT
HHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHCCCCCCCCCCCCCEEEEEEEE
KITVPGLRIGYLVAPDRYVAAVANRHLVSSWMATPAMAEIATRWVSDGTAMELVNWQRRA
EEEECCEEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHH
LVGRHAIAAEMLAGLSYRTHPQSLHVWLPLSGSHTEDGFVSQARLRGVAIAPGKSFHTAD
HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHCEEEECCCCCCCCCC
HGWTPAVRISLGSTTEGELRTGLGIVASLAQGNPEELLLAI
CCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHEEEEC
>Mature Secondary Structure 
TNWRPDPSQLRRPAYLSLAEQIANAITDGKLSDGTQLPPHRKLADDLHLSVQTVSRAYD
CCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
ELSRRGLISGEIGRGSFVQTRPREPEPPYLPERLGEVIDLSILKPVCEQIHLERLRQAFG
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WLSENLPSSSALSFRPNMVFPRHRVVATEWLARCGIDVSPLNVSLTNGATSGMTVALMSV
HHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEEEEEE
APPGSTIATEAISHHTLVPLSTYLGLHLEGLAIDEEGMIPEALDEACRTGPIRAIFLQPS
CCCCCHHHHHHHCCCCEEHHHHHHCCEEEEEEECCCCCCHHHHHHHHCCCCEEEEEECCC
VINPMAALMSAERRQALATVAAKHDIAIIENDILGPMVEDRAPPMAAFAPERTLYVTSFT
HHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHCCCCCCCCCCCCCEEEEEEEE
KITVPGLRIGYLVAPDRYVAAVANRHLVSSWMATPAMAEIATRWVSDGTAMELVNWQRRA
EEEECCEEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHH
LVGRHAIAAEMLAGLSYRTHPQSLHVWLPLSGSHTEDGFVSQARLRGVAIAPGKSFHTAD
HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHCEEEECCCCCCCCCC
HGWTPAVRISLGSTTEGELRTGLGIVASLAQGNPEELLLAI
CCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1400197 [H]