Definition | Rhizobium etli CFN 42 plasmid p42f, complete sequence. |
---|---|
Accession | NC_007766 |
Length | 642,517 |
Click here to switch to the map view.
The map label for this gene is 86360850
Identifier: 86360850
GI number: 86360850
Start: 124175
End: 125047
Strand: Reverse
Name: 86360850
Synonym: RHE_PF00117
Alternate gene names: NA
Gene position: 125047-124175 (Counterclockwise)
Preceding gene: 86360852
Following gene: 86360846
Centisome position: 19.46
GC content: 57.04
Gene sequence:
>873_bases GTGCTCCCATCTTCCACCGTTGCCCTCGCCGAAACGCTATCGGCGAAACTTCCAGACGATTTCTCTCGGAAGGTCCTAGC CGGGTCACTCGGAGCTTCCTGGGACAGCGCTAACCCGATCCGCGCCAATCTCTTTGCAGCTGGCCTGCGCGAACTGGTGA CCTATGTCCTGCATAGTCTGGCGCCTGACGAACTCGTCAAGGCCTGTGGGTGGTACCAGGACCAGCGGCCCAGACGTGAA GCGGATGCAAAGAAGAGAGGGGCCGCTTATCAAGATAGGCCGACCCGCATCGACCGAATGGTCTATGCGACGCAAGGGGG ATTGTCCGATGACTTCCTCGAAAAAATCGGCCTCGATGTGGACGCAGACCATAGGACCCTTCGCGAGATGGTCGACGAGC TTTCGAAATACACCCATATGCGTCCCGGCTCGCTCGTTGAAGGCGATCAAGCCGTTAGCGCTTTCATGGAAGCCGCTATT CACGCCGTGCTTCGCTTTCACAAGGCCATCGAAACGGTGCGGAGCGCAGTGATCGACCTCGTCACCGAGGATATCAATAA GGAAGCAGACGCAAAACTAACCGAGACAATCGTTCAGGAACTGGATGAGCTCTCGACGCACACCACCGTCGAGGAGGTCG TCGCCGACGAAATTCGGGTGACAGTACTCGGTCCCAGGGAGATCGAGTTCTACGTCAAGGGAACCGTGTACGTTCAGCTG AACTACGGCTCTTCATCAGACTTCAGACGCGGTGATGGCGCATCGATGAGCGATAAATACCCCTTTTCGGTACGCATGGG CGCCGCGATGTCCGACTTTATACCGTACGCGCTCGAGGCCGTCTCGGTCGATAACAGCAGTTTTTACGAGTAG
Upstream 100 bases:
>100_bases GAGCTCTTTTCGCTATTACGTCGAAGGCTTGTGACGGAACATCGTCGACGCTAAAGACGCTATCTTTTCTATGTTTGTAT TCACGCGAGGAACCAGCCAC
Downstream 100 bases:
>100_bases GTGCCGACGTTCAGCAACGCCTGCGTTCGACCGGCCCCTTGACCGGATATTTTGGCCGGTGGAATCCGGTCATCCGGAAT CGTCGCGCCTCCGCAAGGTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 290; Mature: 290
Protein sequence:
>290_residues MLPSSTVALAETLSAKLPDDFSRKVLAGSLGASWDSANPIRANLFAAGLRELVTYVLHSLAPDELVKACGWYQDQRPRRE ADAKKRGAAYQDRPTRIDRMVYATQGGLSDDFLEKIGLDVDADHRTLREMVDELSKYTHMRPGSLVEGDQAVSAFMEAAI HAVLRFHKAIETVRSAVIDLVTEDINKEADAKLTETIVQELDELSTHTTVEEVVADEIRVTVLGPREIEFYVKGTVYVQL NYGSSSDFRRGDGASMSDKYPFSVRMGAAMSDFIPYALEAVSVDNSSFYE
Sequences:
>Translated_290_residues MLPSSTVALAETLSAKLPDDFSRKVLAGSLGASWDSANPIRANLFAAGLRELVTYVLHSLAPDELVKACGWYQDQRPRRE ADAKKRGAAYQDRPTRIDRMVYATQGGLSDDFLEKIGLDVDADHRTLREMVDELSKYTHMRPGSLVEGDQAVSAFMEAAI HAVLRFHKAIETVRSAVIDLVTEDINKEADAKLTETIVQELDELSTHTTVEEVVADEIRVTVLGPREIEFYVKGTVYVQL NYGSSSDFRRGDGASMSDKYPFSVRMGAAMSDFIPYALEAVSVDNSSFYE >Mature_290_residues MLPSSTVALAETLSAKLPDDFSRKVLAGSLGASWDSANPIRANLFAAGLRELVTYVLHSLAPDELVKACGWYQDQRPRRE ADAKKRGAAYQDRPTRIDRMVYATQGGLSDDFLEKIGLDVDADHRTLREMVDELSKYTHMRPGSLVEGDQAVSAFMEAAI HAVLRFHKAIETVRSAVIDLVTEDINKEADAKLTETIVQELDELSTHTTVEEVVADEIRVTVLGPREIEFYVKGTVYVQL NYGSSSDFRRGDGASMSDKYPFSVRMGAAMSDFIPYALEAVSVDNSSFYE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32110; Mature: 32110
Theoretical pI: Translated: 4.63; Mature: 4.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLPSSTVALAETLSAKLPDDFSRKVLAGSLGASWDSANPIRANLFAAGLRELVTYVLHSL CCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC APDELVKACGWYQDQRPRREADAKKRGAAYQDRPTRIDRMVYATQGGLSDDFLEKIGLDV CHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHCCCC DADHRTLREMVDELSKYTHMRPGSLVEGDQAVSAFMEAAIHAVLRFHKAIETVRSAVIDL CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VTEDINKEADAKLTETIVQELDELSTHTTVEEVVADEIRVTVLGPREIEFYVKGTVYVQL HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCEEEEEEEEEEEEEE NYGSSSDFRRGDGASMSDKYPFSVRMGAAMSDFIPYALEAVSVDNSSFYE ECCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MLPSSTVALAETLSAKLPDDFSRKVLAGSLGASWDSANPIRANLFAAGLRELVTYVLHSL CCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC APDELVKACGWYQDQRPRREADAKKRGAAYQDRPTRIDRMVYATQGGLSDDFLEKIGLDV CHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHCCCC DADHRTLREMVDELSKYTHMRPGSLVEGDQAVSAFMEAAIHAVLRFHKAIETVRSAVIDL CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VTEDINKEADAKLTETIVQELDELSTHTTVEEVVADEIRVTVLGPREIEFYVKGTVYVQL HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCEEEEEEEEEEEEEE NYGSSSDFRRGDGASMSDKYPFSVRMGAAMSDFIPYALEAVSVDNSSFYE ECCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA