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The map label for this gene is nirD [H]

Identifier: 85860192

GI number: 85860192

Start: 2393389

End: 2393931

Strand: Direct

Name: nirD [H]

Synonym: SYN_00582

Alternate gene names: 85860192

Gene position: 2393389-2393931 (Clockwise)

Preceding gene: 85860191

Following gene: 85860193

Centisome position: 75.28

GC content: 51.2

Gene sequence:

>543_bases
TTGGAACAGAGGATGCGTGACAGACATGGGGAGCAAAATCTCCCGACGGAAAATCAGAAGGAACGAGGGGAAAGGATAGT
GCTGACACGGGATGAGCAGCAAATCCTTCAAGCCCTGCAGGGTGATATTCCACTGCATTCCCGACCCTTTGCCGCTTTAG
GGAAACGCCTCAACCTGTCGGAGGACACCGTGATCCGGATTATCCAGGAATTGGCCGACCGAGGGATTATCCGCAAAATC
GGTGCCATTCTCCGGCATCGTCAGGCGGGATTTAAGCAGAACGCCATGGTTGTCTGGTCTGTTCCGGAATCGCGCATGGA
GATTACGGGAAAGATTCTGGCCTCTTTTCCCGAAGTGTCGCACTGCTATGAACGAACGCCCTCTTTCGAAGGGAAATACA
ATCTCTTTACCATGGTTCATCTGAAATATCCGGATATTGCGAATCAGGTGCGGGAGATGGCGCAGGCGGCAGATCTTGAC
GATTATCAGATCCTCGTCAGCGAAACCGAGTATAAAAAAAGCAGCATGGTCTATTTCACATGA

Upstream 100 bases:

>100_bases
AAAATCCGCAGACAGAAAAGACGCCGCTCGCAACGGGCGCAGGAAAAAGTCCTTGAGTTGAAGCATCGGCAGTCTGAAAG
AAAGAAACTCCGGGAAAAAG

Downstream 100 bases:

>100_bases
CAAAATCCTTATCGGAACAACTTTTTGAAACCGCGGAAGGTCTTCTTCCCGGCGGGGTGAACAGTCCCGTGAGGGCGTTC
CGGGCTGTCGGAGGGGTTCC

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MEQRMRDRHGEQNLPTENQKERGERIVLTRDEQQILQALQGDIPLHSRPFAALGKRLNLSEDTVIRIIQELADRGIIRKI
GAILRHRQAGFKQNAMVVWSVPESRMEITGKILASFPEVSHCYERTPSFEGKYNLFTMVHLKYPDIANQVREMAQAADLD
DYQILVSETEYKKSSMVYFT

Sequences:

>Translated_180_residues
MEQRMRDRHGEQNLPTENQKERGERIVLTRDEQQILQALQGDIPLHSRPFAALGKRLNLSEDTVIRIIQELADRGIIRKI
GAILRHRQAGFKQNAMVVWSVPESRMEITGKILASFPEVSHCYERTPSFEGKYNLFTMVHLKYPDIANQVREMAQAADLD
DYQILVSETEYKKSSMVYFT
>Mature_180_residues
MEQRMRDRHGEQNLPTENQKERGERIVLTRDEQQILQALQGDIPLHSRPFAALGKRLNLSEDTVIRIIQELADRGIIRKI
GAILRHRQAGFKQNAMVVWSVPESRMEITGKILASFPEVSHCYERTPSFEGKYNLFTMVHLKYPDIANQVREMAQAADLD
DYQILVSETEYKKSSMVYFT

Specific function: Required for the biosynthesis of heme D1 of nitrite reductase [H]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011991 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20877; Mature: 20877

Theoretical pI: Translated: 7.72; Mature: 7.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQRMRDRHGEQNLPTENQKERGERIVLTRDEQQILQALQGDIPLHSRPFAALGKRLNLS
CCCHHHHHCCCCCCCCCCHHHCCCEEEEECCHHHHHHHHHCCCCCCCCCHHHHHCCCCCC
EDTVIRIIQELADRGIIRKIGAILRHRQAGFKQNAMVVWSVPESRMEITGKILASFPEVS
HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCHHH
HCYERTPSFEGKYNLFTMVHLKYPDIANQVREMAQAADLDDYQILVSETEYKKSSMVYFT
HHHHCCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEC
>Mature Secondary Structure
MEQRMRDRHGEQNLPTENQKERGERIVLTRDEQQILQALQGDIPLHSRPFAALGKRLNLS
CCCHHHHHCCCCCCCCCCHHHCCCEEEEECCHHHHHHHHHCCCCCCCCCHHHHHCCCCCC
EDTVIRIIQELADRGIIRKIGAILRHRQAGFKQNAMVVWSVPESRMEITGKILASFPEVS
HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCHHH
HCYERTPSFEGKYNLFTMVHLKYPDIANQVREMAQAADLDDYQILVSETEYKKSSMVYFT
HHHHCCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7747927 [H]