| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is yqgH [H]
Identifier: 85859334
GI number: 85859334
Start: 1530386
End: 1531273
Strand: Direct
Name: yqgH [H]
Synonym: SYN_00057
Alternate gene names: 85859334
Gene position: 1530386-1531273 (Clockwise)
Preceding gene: 85859333
Following gene: 85859335
Centisome position: 48.14
GC content: 55.29
Gene sequence:
>888_bases ATGACCCGGCAAGGAAAAGAAAAGATCATCAAAGGGCTGTTTCTCCTGATCGCTTTCGTATCCATTCTTATTCTCGGGCT GATCGTGGTCTCTCTTTTCCGTGAAGGGTTGCCCATCTTCCGGGAAGTGTCTGTTACGGGATTTCTTTTAGGCAGAGAAT GGTATCCCACCTACGAACCGCCGGAATACGGAATCTGGCCGTTGATTGTGGGGTCCCTGATCGTCACGTTCTTTTCCTCG CTGATCGCAGTGCCACTGGGGGTGCTGTCCGCGATTTTCATCGCTGAGATAGCCCCTCTCTCCATCCGGGAAATTTTGAA ATCGGCGATCGAACTTCTGGCCGGTCTGCCTTCCGTGGTGCTGGGATTTTTCGGTATGGTGATTCTGGCGCCGTGGCTGC AGGAGACTTTTGATCTGCCAACGGGGCTGAACATCGTCAACGCCTCGCTCATGCTCGCCATCATGGCGATTCCAACCATT TCCAGCATTTCTGAGGATGCCCTTTACGCGGTTTCCCAGGAATTCAAGGAAGCGTCCTATGCCCTTGGGGCGACGCGATT TGAGACAATCACCCGCGTGATTGTTCCGGCGGCCCTGTCCGGTATTTCGACGGCTGTTATTCTGGGCATGGCTCGAGCGA TGGGGGAAACCATGGTCGTCTTGATGGTGGCGGGCGGCGCGGCGGCCATTCCGGAAAGCATCTTTGACCCGGTGCGGCCC ATGCCGGCAAGCATTGCTGCGGAAATGGGGGAGGCGCCTTTCCGCAGCGGTCATTATCACGCCCTGTATGCCACAGGGAT CATCCTGTTTTTTGTGACTCTTCTGTTCAATATGATTGCAGACTACGTCTCCCAACGCTTCAAGCAGGTAGGGTCGGCCA CGCTGTAG
Upstream 100 bases:
>100_bases CGCAGGGCAGCAACTTGTGGCGAAGGATGGATTTGTGCCGGTGAAGGCCCCGGCAAAGGGTAATGCCAAAAAGGTCAAGA AGTAAGAAAGGAAAGGAAGA
Downstream 100 bases:
>100_bases CTTTTTGGTAAAAATTATCATGAAATGGAAATGGCGTTATATTAAGCAGAATCTTTTTATGGGTGCGGTTTCTCTATGCG CCCTTCTGATCATTCTTGCC
Product: phosphate ABC transporter permease
Products: ADP; phosphate [Cytoplasm]; phosphate [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 295; Mature: 294
Protein sequence:
>295_residues MTRQGKEKIIKGLFLLIAFVSILILGLIVVSLFREGLPIFREVSVTGFLLGREWYPTYEPPEYGIWPLIVGSLIVTFFSS LIAVPLGVLSAIFIAEIAPLSIREILKSAIELLAGLPSVVLGFFGMVILAPWLQETFDLPTGLNIVNASLMLAIMAIPTI SSISEDALYAVSQEFKEASYALGATRFETITRVIVPAALSGISTAVILGMARAMGETMVVLMVAGGAAAIPESIFDPVRP MPASIAAEMGEAPFRSGHYHALYATGIILFFVTLLFNMIADYVSQRFKQVGSATL
Sequences:
>Translated_295_residues MTRQGKEKIIKGLFLLIAFVSILILGLIVVSLFREGLPIFREVSVTGFLLGREWYPTYEPPEYGIWPLIVGSLIVTFFSS LIAVPLGVLSAIFIAEIAPLSIREILKSAIELLAGLPSVVLGFFGMVILAPWLQETFDLPTGLNIVNASLMLAIMAIPTI SSISEDALYAVSQEFKEASYALGATRFETITRVIVPAALSGISTAVILGMARAMGETMVVLMVAGGAAAIPESIFDPVRP MPASIAAEMGEAPFRSGHYHALYATGIILFFVTLLFNMIADYVSQRFKQVGSATL >Mature_294_residues TRQGKEKIIKGLFLLIAFVSILILGLIVVSLFREGLPIFREVSVTGFLLGREWYPTYEPPEYGIWPLIVGSLIVTFFSSL IAVPLGVLSAIFIAEIAPLSIREILKSAIELLAGLPSVVLGFFGMVILAPWLQETFDLPTGLNIVNASLMLAIMAIPTIS SISEDALYAVSQEFKEASYALGATRFETITRVIVPAALSGISTAVILGMARAMGETMVVLMVAGGAAAIPESIFDPVRPM PASIAAEMGEAPFRSGHYHALYATGIILFFVTLLFNMIADYVSQRFKQVGSATL
Specific function: Part of the binding-protein-dependent transport system yqgGHIJK. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG0573
COG function: function code P; ABC-type phosphate transport system, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1790164, Length=297, Percent_Identity=32.3232323232323, Blast_Score=130, Evalue=1e-31, Organism=Escherichia coli, GI1790163, Length=222, Percent_Identity=27.027027027027, Blast_Score=79, Evalue=3e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 - InterPro: IPR011864 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 31779; Mature: 31648
Theoretical pI: Translated: 4.87; Mature: 4.87
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRQGKEKIIKGLFLLIAFVSILILGLIVVSLFREGLPIFREVSVTGFLLGREWYPTYEP CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEECCCCCCCCCC PEYGIWPLIVGSLIVTFFSSLIAVPLGVLSAIFIAEIAPLSIREILKSAIELLAGLPSVV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHH LGFFGMVILAPWLQETFDLPTGLNIVNASLMLAIMAIPTISSISEDALYAVSQEFKEASY HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALGATRFETITRVIVPAALSGISTAVILGMARAMGETMVVLMVAGGAAAIPESIFDPVRP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHCCHHHHCCCCC MPASIAAEMGEAPFRSGHYHALYATGIILFFVTLLFNMIADYVSQRFKQVGSATL CCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure TRQGKEKIIKGLFLLIAFVSILILGLIVVSLFREGLPIFREVSVTGFLLGREWYPTYEP CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEECCCCCCCCCC PEYGIWPLIVGSLIVTFFSSLIAVPLGVLSAIFIAEIAPLSIREILKSAIELLAGLPSVV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHH LGFFGMVILAPWLQETFDLPTGLNIVNASLMLAIMAIPTISSISEDALYAVSQEFKEASY HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALGATRFETITRVIVPAALSGISTAVILGMARAMGETMVVLMVAGGAAAIPESIFDPVRP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHCCHHHHCCCCC MPASIAAEMGEAPFRSGHYHALYATGIILFFVTLLFNMIADYVSQRFKQVGSATL CCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; phosphate [Periplasm]; H2O [C]
Specific reaction: ATP + phosphate [Periplasm] + H2O = ADP + phosphate [Cytoplasm] + phosphate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8760913; 8969508; 9384377 [H]