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The map label for this gene is csrA

Identifier: 85859205

GI number: 85859205

Start: 1378361

End: 1378600

Strand: Direct

Name: csrA

Synonym: SYN_02810

Alternate gene names: 85859205

Gene position: 1378361-1378600 (Clockwise)

Preceding gene: 85859204

Following gene: 85859206

Centisome position: 43.35

GC content: 42.5

Gene sequence:

>240_bases
ATGCTCATCCTGACAAGGAAGTTGGGAGAATCCATCGTAATAGGCGATCAGATACAAATTACCCTTCTGGATATTAAAGG
AAAACATGTCCGTATCGGTGTCAATGCGCCTAAAGGCATTGCCGTCCATCGTGGTGAAGTATATGAAATGATACAGGATG
AAAACAAAAAGGCCTTTGAATCCGACGTTAAAAACAGTGAGATGCTGTCCGCTCTATGGGCGCAAGTGAAGATATTATAG

Upstream 100 bases:

>100_bases
TACCATGAAAGAAGTCTCCCTGAAGGCTTGCTATGCCATCGCTTCAGAGATCGGTAATACCTCAGTTCTGGATTTCCTCA
AGTAGAAAAAAGGTTTTTTA

Downstream 100 bases:

>100_bases
AAGAAAACTGACGAGGTGTGATCTGTGAAAATATCAACCACCAGATTTGGAATGATCGAGATCAGTGAGTCGGACATTAT
TTTGATGAGAAGAGGAATAT

Product: carbon storage regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 79; Mature: 79

Protein sequence:

>79_residues
MLILTRKLGESIVIGDQIQITLLDIKGKHVRIGVNAPKGIAVHRGEVYEMIQDENKKAFESDVKNSEMLSALWAQVKIL

Sequences:

>Translated_79_residues
MLILTRKLGESIVIGDQIQITLLDIKGKHVRIGVNAPKGIAVHRGEVYEMIQDENKKAFESDVKNSEMLSALWAQVKIL
>Mature_79_residues
MLILTRKLGESIVIGDQIQITLLDIKGKHVRIGVNAPKGIAVHRGEVYEMIQDENKKAFESDVKNSEMLSALWAQVKIL

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family

Homologues:

Organism=Escherichia coli, GI1789047, Length=57, Percent_Identity=56.140350877193, Blast_Score=75, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CSRA_SYNAS (Q2LT33)

Other databases:

- EMBL:   CP000252
- RefSeq:   YP_461407.1
- ProteinModelPortal:   Q2LT33
- SMR:   Q2LT33
- STRING:   Q2LT33
- GeneID:   3883344
- GenomeReviews:   CP000252_GR
- KEGG:   sat:SYN_02810
- NMPDR:   fig|56780.10.peg.1343
- eggNOG:   COG1551
- HOGENOM:   HBG724655
- OMA:   RIGINAP
- PhylomeDB:   Q2LT33
- BioCyc:   SACI56780:SYN_02810-MONOMER
- HAMAP:   MF_00167
- InterPro:   IPR003751
- ProDom:   PD009007
- TIGRFAMs:   TIGR00202

Pfam domain/function: PF02599 CsrA

EC number: NA

Molecular weight: Translated: 8843; Mature: 8843

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLILTRKLGESIVIGDQIQITLLDIKGKHVRIGVNAPKGIAVHRGEVYEMIQDENKKAFE
CEEEECCCCCEEEECCEEEEEEEECCCCEEEEECCCCCCEEEECCHHHHHHHCCCCHHHH
SDVKNSEMLSALWAQVKIL
HCCCCHHHHHHHHHHEECC
>Mature Secondary Structure
MLILTRKLGESIVIGDQIQITLLDIKGKHVRIGVNAPKGIAVHRGEVYEMIQDENKKAFE
CEEEECCCCCEEEECCEEEEEEEECCCCEEEEECCCCCCEEEECCHHHHHHHCCCCHHHH
SDVKNSEMLSALWAQVKIL
HCCCCHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA