Click here to switch to the map view.

The map label for this gene is rpfG [H]

Identifier: 85858208

GI number: 85858208

Start: 363043

End: 364107

Strand: Direct

Name: rpfG [H]

Synonym: SYN_00525

Alternate gene names: 85858208

Gene position: 363043-364107 (Clockwise)

Preceding gene: 85858206

Following gene: 85858211

Centisome position: 11.42

GC content: 51.08

Gene sequence:

>1065_bases
ATGAACAGCGGCGGATACATGGCCATCCCTCCTGGAGCAATCCTGCCGGAATCTCTACCGGAATTCAAAATATTCATGCG
GAACAGGGAGGGAAAATATGTCCTCTGGGCAGCGGACGGCAACAGGGTTACCGTTGCGCAACTCGCAAAACTCTCGGAAA
GCGGCGTTCAAGACGTATTTGTCGATATCGAAGAGTCGTTTAAGTACGAACAGTATCTTGAGGCCAACCTGGGGAAAATC
CTCGACAATCAAGGGATAACGGTCGACCGGAAAGCAGCGATATTCAGCAGGGTGTCCACAAATGTCGTGAAAGCCGCCTT
TGAAACTTCCCTCAAGTCCGGCGCCATGGGTATGGAGACGCTGCAGCGGACACAGAAAATGATCGAGAATGCCATGAAAT
TCATAACGGATTCCAACTCCCTTCCCGCCCTGGCCAAGATGATAGGCCATGATTACGAAACCTATGAACATGCAATGAAA
GTCACCTGGTGGACCGTGGCATTTATCAGCGAAAATCCGGAGATCCTGACATATTGTCAAAAAGATGAGATATCTGATGC
AGAGCAGATATCGGAAACGCTGAGGTCATGCGGTGTCTGCGCCCTGTTGCACGATATCGGAAAGGCTTATGTCCCTCAAG
AGGTCATCAATAAAAACGGCCCTCTTACTGAGATCGAATGGGAGATCATGAAGCGTCACCCTCTCAGCGGCCTGGCGATG
CTTCTGGATTCGGAACTGCCCGCGTTCGTCAAGAAGGCCATTGTGCAGCATCATGAGGATTTTGACGGCGGCGGCTATCC
CATGAATCTGGAGGGAACGAACATAACCGTCCTTGCCCGCGTGCTGAGGATTATGGATGTCTTCGATGCCATGACCTCCC
GCAGGCCGTATAAAGATCCTCTGTCTCCCATGAAGGTGATTCAGATCATGATCGGAACGCCGTCGCATCCGGAGGATAAT
GCCGAACCGGCACAGGATCCTCGGGATCGGGGGATGGGCCGGTGCTTTGACCATGAACTGCTTGGAAAATTCATAATATT
TATCGGGAATGTAAAACTGGATTAG

Upstream 100 bases:

>100_bases
CCAATAAATAAATCGGCAGTTGCACCAGCAGGACGCCATAATCAGGAGGCAGTTAGCGAAGATGCGTCGGCCGGCAGGAA
ATGATTGAGGCGTTAATGCG

Downstream 100 bases:

>100_bases
GAAATCGACTGGGAGTTTCGCGCAGAAAGATAAAGAGCTATACCTGATAGAACCGCCCGTCCGGAAGTCGAACACAGGTC
AGTTGTCCCCCGTAGACCGC

Product: phosphohydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 354; Mature: 354

Protein sequence:

>354_residues
MNSGGYMAIPPGAILPESLPEFKIFMRNREGKYVLWAADGNRVTVAQLAKLSESGVQDVFVDIEESFKYEQYLEANLGKI
LDNQGITVDRKAAIFSRVSTNVVKAAFETSLKSGAMGMETLQRTQKMIENAMKFITDSNSLPALAKMIGHDYETYEHAMK
VTWWTVAFISENPEILTYCQKDEISDAEQISETLRSCGVCALLHDIGKAYVPQEVINKNGPLTEIEWEIMKRHPLSGLAM
LLDSELPAFVKKAIVQHHEDFDGGGYPMNLEGTNITVLARVLRIMDVFDAMTSRRPYKDPLSPMKVIQIMIGTPSHPEDN
AEPAQDPRDRGMGRCFDHELLGKFIIFIGNVKLD

Sequences:

>Translated_354_residues
MNSGGYMAIPPGAILPESLPEFKIFMRNREGKYVLWAADGNRVTVAQLAKLSESGVQDVFVDIEESFKYEQYLEANLGKI
LDNQGITVDRKAAIFSRVSTNVVKAAFETSLKSGAMGMETLQRTQKMIENAMKFITDSNSLPALAKMIGHDYETYEHAMK
VTWWTVAFISENPEILTYCQKDEISDAEQISETLRSCGVCALLHDIGKAYVPQEVINKNGPLTEIEWEIMKRHPLSGLAM
LLDSELPAFVKKAIVQHHEDFDGGGYPMNLEGTNITVLARVLRIMDVFDAMTSRRPYKDPLSPMKVIQIMIGTPSHPEDN
AEPAQDPRDRGMGRCFDHELLGKFIIFIGNVKLD
>Mature_354_residues
MNSGGYMAIPPGAILPESLPEFKIFMRNREGKYVLWAADGNRVTVAQLAKLSESGVQDVFVDIEESFKYEQYLEANLGKI
LDNQGITVDRKAAIFSRVSTNVVKAAFETSLKSGAMGMETLQRTQKMIENAMKFITDSNSLPALAKMIGHDYETYEHAMK
VTWWTVAFISENPEILTYCQKDEISDAEQISETLRSCGVCALLHDIGKAYVPQEVINKNGPLTEIEWEIMKRHPLSGLAM
LLDSELPAFVKKAIVQHHEDFDGGGYPMNLEGTNITVLARVLRIMDVFDAMTSRRPYKDPLSPMKVIQIMIGTPSHPEDN
AEPAQDPRDRGMGRCFDHELLGKFIIFIGNVKLD

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 39654; Mature: 39654

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSGGYMAIPPGAILPESLPEFKIFMRNREGKYVLWAADGNRVTVAQLAKLSESGVQDVF
CCCCCEEEECCCCCCCCCCCHHHHHEECCCCCEEEEECCCCEEHHHHHHHHHHCCHHHHH
VDIEESFKYEQYLEANLGKILDNQGITVDRKAAIFSRVSTNVVKAAFETSLKSGAMGMET
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
LQRTQKMIENAMKFITDSNSLPALAKMIGHDYETYEHAMKVTWWTVAFISENPEILTYCQ
HHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHEEEEEEEECCCCCEEEEEC
KDEISDAEQISETLRSCGVCALLHDIGKAYVPQEVINKNGPLTEIEWEIMKRHPLSGLAM
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHCCCHHHHHH
LLDSELPAFVKKAIVQHHEDFDGGGYPMNLEGTNITVLARVLRIMDVFDAMTSRRPYKDP
HHHCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
LSPMKVIQIMIGTPSHPEDNAEPAQDPRDRGMGRCFDHELLGKFIIFIGNVKLD
CCHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHEECEECC
>Mature Secondary Structure
MNSGGYMAIPPGAILPESLPEFKIFMRNREGKYVLWAADGNRVTVAQLAKLSESGVQDVF
CCCCCEEEECCCCCCCCCCCHHHHHEECCCCCEEEEECCCCEEHHHHHHHHHHCCHHHHH
VDIEESFKYEQYLEANLGKILDNQGITVDRKAAIFSRVSTNVVKAAFETSLKSGAMGMET
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
LQRTQKMIENAMKFITDSNSLPALAKMIGHDYETYEHAMKVTWWTVAFISENPEILTYCQ
HHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHEEEEEEEECCCCCEEEEEC
KDEISDAEQISETLRSCGVCALLHDIGKAYVPQEVINKNGPLTEIEWEIMKRHPLSGLAM
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHCCCHHHHHH
LLDSELPAFVKKAIVQHHEDFDGGGYPMNLEGTNITVLARVLRIMDVFDAMTSRRPYKDP
HHHCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
LSPMKVIQIMIGTPSHPEDNAEPAQDPRDRGMGRCFDHELLGKFIIFIGNVKLD
CCHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHEECEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]