| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is 85858176
Identifier: 85858176
GI number: 85858176
Start: 329158
End: 329925
Strand: Direct
Name: 85858176
Synonym: SYN_01605
Alternate gene names: NA
Gene position: 329158-329925 (Clockwise)
Preceding gene: 85858174
Following gene: 85858177
Centisome position: 10.35
GC content: 42.84
Gene sequence:
>768_bases ATGAATATTCGCATACTGGGCTGTCATGGATCACAGGTTCCCGGTTGTAATACAACGAGTTTCCTGGTGGAAGAAAATGT GCTGATTGATGCCGGTTCAATAACTTCAACGCTGACTGCGGAGGAACAGGTAAAAGTTGATTATATTTTTGTCACACACG CTCATTTGGATCATGTCAAGGAAATGATGTTCATGGTGGATAATCTGTGGTACCTACAGAAGTCCAATCCTCTGACAATC GTCAGCATAGAGCCGGTCATCCATGCTTTAAAGACCCATCTGTTCAATGGGCTGATCTGGCCGGATTTTTCTTCCTTGCC GAATGCGGAAAATCCTGTGTTGAGGTATGAAATTCTTGAGGTCGGCGGGAAAAGAAATATAGGCTCCTTCGCGGTCACAG CCATATCTGTAAACCATACGGTGGAAACCGTTTCTTATGTAATAGAAACAGGCCAGGGATCCATGATCTTTATCGGAGAC ACAGGGCCGACAGAAGAGATATGGAAAGTTGCGAACTCGATAGAAGATTTGAAAGCCATCTTTGTGGAAACATCTCTTCC CGATGAAATGAATCATATTGCCGAAATGACCGGTCATTTAACTCCTGCCATGCTGATGAAGGAGTTGTTTAAACTCAATA ATAAAAATCTGGATATCTATCTCTATCATATGAAGGATTTTTATTCGAAATTAATAACTCGCCAGGTTGCAGCCATGAAT CAGAACAGGCTCCACATTTTGGAGGACGGTCAGACTGTCCGTATTTAG
Upstream 100 bases:
>100_bases TTCTGCCGATGGATGTTGGCGTGCAACAAAGCGCCCGGATCGTGCTGTCAAAGAAAAATCCCGGCGATAAAACAGAGAAG AAGAGAAAGGGCCAGATTGG
Downstream 100 bases:
>100_bases CAGGATGATGTCCTTCTCTTAAGATTTTTCGACCTCAGGCAGTCTTGGACGGGATCGATTACGGAATTTCAGGGAGTCGG CCTGAAGGTTCTGCGAAGAA
Product: metallo-beta-lactamase superfamily protein
Products: NA
Alternate protein names: Cyclic-AMP Phosphodiesterase; Metal Dependent Phosphohydrolase; CAMP Phosphodiesterase; Beta-Lactamase Domain-Containing Protein; 3 5'-Cyclic-Nucleotide Phosphodiesterase; CAMP Phosphodiesterase Class-II; Beta-Lactamase-Like; Camp Phosphodiesterases Class-Ii; Metallo-Beta-Lactamase; Response Regulator; Cyclic-AMP Phosphodiesterase Class-II; CAMP Phosphodiesterase-Like Protein; GAF Domain Protein; Beta-Lactamase-Like Protein; CAMP Phosphodiesterases Class-II; Metallo-Beta-Lactamase Family Protein; Metallo-Beta-Lactamase Superfamily Protein; Beta-Lactamase Superfamily Metal-Dependent Hydrolase
Number of amino acids: Translated: 255; Mature: 255
Protein sequence:
>255_residues MNIRILGCHGSQVPGCNTTSFLVEENVLIDAGSITSTLTAEEQVKVDYIFVTHAHLDHVKEMMFMVDNLWYLQKSNPLTI VSIEPVIHALKTHLFNGLIWPDFSSLPNAENPVLRYEILEVGGKRNIGSFAVTAISVNHTVETVSYVIETGQGSMIFIGD TGPTEEIWKVANSIEDLKAIFVETSLPDEMNHIAEMTGHLTPAMLMKELFKLNNKNLDIYLYHMKDFYSKLITRQVAAMN QNRLHILEDGQTVRI
Sequences:
>Translated_255_residues MNIRILGCHGSQVPGCNTTSFLVEENVLIDAGSITSTLTAEEQVKVDYIFVTHAHLDHVKEMMFMVDNLWYLQKSNPLTI VSIEPVIHALKTHLFNGLIWPDFSSLPNAENPVLRYEILEVGGKRNIGSFAVTAISVNHTVETVSYVIETGQGSMIFIGD TGPTEEIWKVANSIEDLKAIFVETSLPDEMNHIAEMTGHLTPAMLMKELFKLNNKNLDIYLYHMKDFYSKLITRQVAAMN QNRLHILEDGQTVRI >Mature_255_residues MNIRILGCHGSQVPGCNTTSFLVEENVLIDAGSITSTLTAEEQVKVDYIFVTHAHLDHVKEMMFMVDNLWYLQKSNPLTI VSIEPVIHALKTHLFNGLIWPDFSSLPNAENPVLRYEILEVGGKRNIGSFAVTAISVNHTVETVSYVIETGQGSMIFIGD TGPTEEIWKVANSIEDLKAIFVETSLPDEMNHIAEMTGHLTPAMLMKELFKLNNKNLDIYLYHMKDFYSKLITRQVAAMN QNRLHILEDGQTVRI
Specific function: Unknown
COG id: COG5212
COG function: function code T; Low-affinity cAMP phosphodiesterase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28717; Mature: 28717
Theoretical pI: Translated: 5.28; Mature: 5.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIRILGCHGSQVPGCNTTSFLVEENVLIDAGSITSTLTAEEQVKVDYIFVTHAHLDHVK CCEEEEECCCCCCCCCCCEEEEEECCEEEECCCCCEEECCCCCEEEEEEEEECHHHHHHH EMMFMVDNLWYLQKSNPLTIVSIEPVIHALKTHLFNGLIWPDFSSLPNAENPVLRYEILE HHHHHHHHEEEEECCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEE VGGKRNIGSFAVTAISVNHTVETVSYVIETGQGSMIFIGDTGPTEEIWKVANSIEDLKAI CCCCCCCCCEEEEEEEECHHHHHHHHHEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHE FVETSLPDEMNHIAEMTGHLTPAMLMKELFKLNNKNLDIYLYHMKDFYSKLITRQVAAMN EEECCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHCC QNRLHILEDGQTVRI CCCEEEEECCCEECC >Mature Secondary Structure MNIRILGCHGSQVPGCNTTSFLVEENVLIDAGSITSTLTAEEQVKVDYIFVTHAHLDHVK CCEEEEECCCCCCCCCCCEEEEEECCEEEECCCCCEEECCCCCEEEEEEEEECHHHHHHH EMMFMVDNLWYLQKSNPLTIVSIEPVIHALKTHLFNGLIWPDFSSLPNAENPVLRYEILE HHHHHHHHEEEEECCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEE VGGKRNIGSFAVTAISVNHTVETVSYVIETGQGSMIFIGDTGPTEEIWKVANSIEDLKAI CCCCCCCCCEEEEEEEECHHHHHHHHHEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHE FVETSLPDEMNHIAEMTGHLTPAMLMKELFKLNNKNLDIYLYHMKDFYSKLITRQVAAMN EEECCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHCC QNRLHILEDGQTVRI CCCEEEEECCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA