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The map label for this gene is yagA [C]

Identifier: 85375807

GI number: 85375807

Start: 3001535

End: 3002416

Strand: Direct

Name: yagA [C]

Synonym: ELI_14900

Alternate gene names: 85375807

Gene position: 3001535-3002416 (Clockwise)

Preceding gene: 85375806

Following gene: 85375810

Centisome position: 98.33

GC content: 60.88

Gene sequence:

>882_bases
GTGCAGGAGGCATTGGATATCTGCCAGCGCCGTGCCTGCCGGGTCGTTGCCCAGCACCGCTCGACCCAGCGCAAGCTGCC
CGCACCACCAGCCGACGAGAAGCCGCTGACAGCTGCAATCATCCGGCTGGCCCAGCAATATGGTCGCTACGGCTATCGCC
GGATCACGGCGCTGCTGCGCAATGAAAGTTGGTTGGTGAACGCCAAGCGGGTCGAGCGGATCTGGCGCCGTGAAGGGCTC
AAGGTTCCGCAGAGACAGCCAAAGCGCGGGCGTCTGTGGTTCAACGATGGATCATGCGTGAGGCTGCGTCCGCAATATAG
TGGCCATGTGTGGAGCTACGACTTCGTCATGGATCGCACCCATGACGGCAAGGCCTTCCGCATGCTTACCGTGATCGACG
AGTACAGCCGCCAGTGCCTGGCGATCCATGTCCAGCGCAAGCTCAAGAGCGATGATGTCCTGGCCGTGCTGACCGAGCTG
TTCCAACGCCATGGTCCGCCTGATCACATCCGTAGCGATAATGGCGCTGAGTTCACTTCTCATGCCGTGCGCGACTGGCT
CTGGCGGATTGGTGTGAAGACTCTCTACATCGAACCCGGATCACCATGGGAGAATGGCTACAACGAATCCTTCAACGGCA
AGCTCAGGGATGAGCTTCTCAACGGGGAGATCTTCTACACTCTGAAGGAGGCAATCATCCTGATCGAGCGCTGGCGTATC
CACTACAACACCGTCCGGCCACACTCTTCGCTGGGCTACCAGCCGCCGGCCCCACAAACGATCTTGCCTCGTCCTGCCAT
GCTGCCTTACGCTGCGCTCCAGGCCGCCCAGCAGGGCGACCCCAACCGCCGGAACTCTAACTTAACCGGTGGACCACCCT
GA

Upstream 100 bases:

>100_bases
GGAAGGCGGTGTCTGATCTTACGCTCGATGCGCTGATCCTGAAGGAGGTTGTCGAGGGAAAGTACTGAGCCCTTCACGGC
GTCGGCTGGCCATCGACCAT

Downstream 100 bases:

>100_bases
TGGGGCAGGTCAGCAGCATGGTGGCGGCAGGCACCGCTTCGGCAGGTTTCTGTTCGGTCATTTCCACTCTTCTCCCTTGA
TGTAGCCAATATCGGTGCCG

Product: transposase orfB

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MQEALDICQRRACRVVAQHRSTQRKLPAPPADEKPLTAAIIRLAQQYGRYGYRRITALLRNESWLVNAKRVERIWRREGL
KVPQRQPKRGRLWFNDGSCVRLRPQYSGHVWSYDFVMDRTHDGKAFRMLTVIDEYSRQCLAIHVQRKLKSDDVLAVLTEL
FQRHGPPDHIRSDNGAEFTSHAVRDWLWRIGVKTLYIEPGSPWENGYNESFNGKLRDELLNGEIFYTLKEAIILIERWRI
HYNTVRPHSSLGYQPPAPQTILPRPAMLPYAALQAAQQGDPNRRNSNLTGGPP

Sequences:

>Translated_293_residues
MQEALDICQRRACRVVAQHRSTQRKLPAPPADEKPLTAAIIRLAQQYGRYGYRRITALLRNESWLVNAKRVERIWRREGL
KVPQRQPKRGRLWFNDGSCVRLRPQYSGHVWSYDFVMDRTHDGKAFRMLTVIDEYSRQCLAIHVQRKLKSDDVLAVLTEL
FQRHGPPDHIRSDNGAEFTSHAVRDWLWRIGVKTLYIEPGSPWENGYNESFNGKLRDELLNGEIFYTLKEAIILIERWRI
HYNTVRPHSSLGYQPPAPQTILPRPAMLPYAALQAAQQGDPNRRNSNLTGGPP
>Mature_293_residues
MQEALDICQRRACRVVAQHRSTQRKLPAPPADEKPLTAAIIRLAQQYGRYGYRRITALLRNESWLVNAKRVERIWRREGL
KVPQRQPKRGRLWFNDGSCVRLRPQYSGHVWSYDFVMDRTHDGKAFRMLTVIDEYSRQCLAIHVQRKLKSDDVLAVLTEL
FQRHGPPDHIRSDNGAEFTSHAVRDWLWRIGVKTLYIEPGSPWENGYNESFNGKLRDELLNGEIFYTLKEAIILIERWRI
HYNTVRPHSSLGYQPPAPQTILPRPAMLPYAALQAAQQGDPNRRNSNLTGGPP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=236, Percent_Identity=27.9661016949153, Blast_Score=76, Evalue=3e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 34012; Mature: 34012

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQEALDICQRRACRVVAQHRSTQRKLPAPPADEKPLTAAIIRLAQQYGRYGYRRITALLR
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
NESWLVNAKRVERIWRREGLKVPQRQPKRGRLWFNDGSCVRLRPQYSGHVWSYDFVMDRT
CCCCEECHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCEEEECCCCCCCEEEEEEEEECC
HDGKAFRMLTVIDEYSRQCLAIHVQRKLKSDDVLAVLTELFQRHGPPDHIRSDNGAEFTS
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
HAVRDWLWRIGVKTLYIEPGSPWENGYNESFNGKLRDELLNGEIFYTLKEAIILIERWRI
HHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHE
HYNTVRPHSSLGYQPPAPQTILPRPAMLPYAALQAAQQGDPNRRNSNLTGGPP
EEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQEALDICQRRACRVVAQHRSTQRKLPAPPADEKPLTAAIIRLAQQYGRYGYRRITALLR
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
NESWLVNAKRVERIWRREGLKVPQRQPKRGRLWFNDGSCVRLRPQYSGHVWSYDFVMDRT
CCCCEECHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCEEEECCCCCCCEEEEEEEEECC
HDGKAFRMLTVIDEYSRQCLAIHVQRKLKSDDVLAVLTELFQRHGPPDHIRSDNGAEFTS
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
HAVRDWLWRIGVKTLYIEPGSPWENGYNESFNGKLRDELLNGEIFYTLKEAIILIERWRI
HHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHE
HYNTVRPHSSLGYQPPAPQTILPRPAMLPYAALQAAQQGDPNRRNSNLTGGPP
EEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1718819 [H]