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The map label for this gene is yggB [C]

Identifier: 85375677

GI number: 85375677

Start: 2861211

End: 2862614

Strand: Direct

Name: yggB [C]

Synonym: ELI_14250

Alternate gene names: 85375677

Gene position: 2861211-2862614 (Clockwise)

Preceding gene: 85375676

Following gene: 85375679

Centisome position: 93.74

GC content: 64.67

Gene sequence:

>1404_bases
ATGCGGGCGGGCTTGGCCAATATTCTGAAATCTCTCGCGGCCACGTGGCTGCTGTTTGCTGTTGCGTCGCCAGCCCACGC
TGTGCTGCCCGGCGCGCCTGAAGGCGCCGCCGAGCCCGCGTCAACCGAAACGCAGGCGATCGAGCAGAGCCAGGATGCCG
GCACCGACAGCCGCATCCGCGGCCGCATCGAAGGTATTTTCGCCGAACTGCCCGCCTTTGCTGATGTCGAGGTCACGGTC
AGCGACGGCGTGGTGACGCTCAGCGGAACCGTGCCGGATGAAGCCGATATCGAGCGGGCCGAGAATATCGTCGGGCGCAT
CAATGGCGTCGTGACGATCGAGAACGGGCTCGAACGCGATCTGTCGGTCGATGGCGGTATCGGGGCGCTGGAGGATTTGA
CCGAGCGCGGCACAGGCCTGATCGAACTGGCGCCGTTGCTGCTGGCCGCGCTGATCGTGGCGGCAGCGATCGGCGCGATC
GGCTATCTCATTGCCGGCTTCGGGGCGCTCTGGCGCCGCATCGCGCCCAATGTTTTCCTCGCCGAGGTGTTGCGCACCGC
GATCCGCTTCATCTTCGTCATAGCCGGGCTCGTTATCGCGCTCGACATGCTCGGCGCAGGCGCGCTTCTCGGCGCGGTGC
TCGGCGGTGCGGGGGTCATCGGCCTCGCCCTGGGCTTTGCCATGCGCGACACGGTGGAGAATTATGTCGCTTCGCTGTTC
CTGTCGCTGCGCCAGCCTTTCCGCGCCAACGATCACGTCGTGATCGACGACAAGGAAGGTCGCGTCATCCGCCTGACCAG
CCGCGCCACGATTTTGATGACGCTGGAAGGCAATCACCTGCGCATTCCCAACAGCCAGGTCTTCAAGGCGATCATCCTGA
ATTACACGACCAATCCGAACCGTCGGTTCGAATTCGAAATGGGGATCGACGCGGACGACGATGCCGATGCGGCGCGCGCG
CTTGGCCGACAGACGCTTGGTGACTTGCCGTTCGTTCTCTCCGATCCGCCGCCGGAAGCACGCACCGAAGCCGTGGGCGA
TTCCAATATCGTCATCAAGTTTCTCGGCTGGGTGGACCAGCGCGAAGCCGATTGGCACAAGGCCCGAAGCCGCGCCATCG
CGGCGGTCAAGGTCGCGCTCGAAGACGGTGGCTTTGGCCTGCCCGAGCCGATCTATCGCCTGCGTTTCGACCCGCGCACC
GGACCTCTGCCTTTCGAGAATATCGAGAAGACGAAGGGGTCCGAACCGGCGCCTACGCCGCCGCCCGCCAAGGCTGCCAC
CGCACCGGTGGAGGAAGACGTTTCGGCGACCGACGAGATTGCGCAGATGGTCGAGAAGGAGCGCCAGGGAGAGGCCGACG
ACAGCGCCGATCTGCTCGATTCCTCCAAGCCTTCCGAATACTAG

Upstream 100 bases:

>100_bases
GCGATCGGCCTGCCGATTGGCCTGACGTTTTTCTTCAAGCTGATTTTCGCGACAATAGCCTGATCCGGGAACTGGATAGG
CTGATGCTCGCTATCTGAAT

Downstream 100 bases:

>100_bases
GCTTTCGCCGCGCGTTCGATCGCTTCGCGCACGATCTGCCGCGCTTCGGCCGCGTCGCCCCATTTGCCGATCCGGACCCA
CTTTTCGGCCTCGAGATCCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 467; Mature: 467

Protein sequence:

>467_residues
MRAGLANILKSLAATWLLFAVASPAHAVLPGAPEGAAEPASTETQAIEQSQDAGTDSRIRGRIEGIFAELPAFADVEVTV
SDGVVTLSGTVPDEADIERAENIVGRINGVVTIENGLERDLSVDGGIGALEDLTERGTGLIELAPLLLAALIVAAAIGAI
GYLIAGFGALWRRIAPNVFLAEVLRTAIRFIFVIAGLVIALDMLGAGALLGAVLGGAGVIGLALGFAMRDTVENYVASLF
LSLRQPFRANDHVVIDDKEGRVIRLTSRATILMTLEGNHLRIPNSQVFKAIILNYTTNPNRRFEFEMGIDADDDADAARA
LGRQTLGDLPFVLSDPPPEARTEAVGDSNIVIKFLGWVDQREADWHKARSRAIAAVKVALEDGGFGLPEPIYRLRFDPRT
GPLPFENIEKTKGSEPAPTPPPAKAATAPVEEDVSATDEIAQMVEKERQGEADDSADLLDSSKPSEY

Sequences:

>Translated_467_residues
MRAGLANILKSLAATWLLFAVASPAHAVLPGAPEGAAEPASTETQAIEQSQDAGTDSRIRGRIEGIFAELPAFADVEVTV
SDGVVTLSGTVPDEADIERAENIVGRINGVVTIENGLERDLSVDGGIGALEDLTERGTGLIELAPLLLAALIVAAAIGAI
GYLIAGFGALWRRIAPNVFLAEVLRTAIRFIFVIAGLVIALDMLGAGALLGAVLGGAGVIGLALGFAMRDTVENYVASLF
LSLRQPFRANDHVVIDDKEGRVIRLTSRATILMTLEGNHLRIPNSQVFKAIILNYTTNPNRRFEFEMGIDADDDADAARA
LGRQTLGDLPFVLSDPPPEARTEAVGDSNIVIKFLGWVDQREADWHKARSRAIAAVKVALEDGGFGLPEPIYRLRFDPRT
GPLPFENIEKTKGSEPAPTPPPAKAATAPVEEDVSATDEIAQMVEKERQGEADDSADLLDSSKPSEY
>Mature_467_residues
MRAGLANILKSLAATWLLFAVASPAHAVLPGAPEGAAEPASTETQAIEQSQDAGTDSRIRGRIEGIFAELPAFADVEVTV
SDGVVTLSGTVPDEADIERAENIVGRINGVVTIENGLERDLSVDGGIGALEDLTERGTGLIELAPLLLAALIVAAAIGAI
GYLIAGFGALWRRIAPNVFLAEVLRTAIRFIFVIAGLVIALDMLGAGALLGAVLGGAGVIGLALGFAMRDTVENYVASLF
LSLRQPFRANDHVVIDDKEGRVIRLTSRATILMTLEGNHLRIPNSQVFKAIILNYTTNPNRRFEFEMGIDADDDADAARA
LGRQTLGDLPFVLSDPPPEARTEAVGDSNIVIKFLGWVDQREADWHKARSRAIAAVKVALEDGGFGLPEPIYRLRFDPRT
GPLPFENIEKTKGSEPAPTPPPAKAATAPVEEDVSATDEIAQMVEKERQGEADDSADLLDSSKPSEY

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=281, Percent_Identity=25.9786476868327, Blast_Score=79, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 49625; Mature: 49625

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: PS50914 BON

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAGLANILKSLAATWLLFAVASPAHAVLPGAPEGAAEPASTETQAIEQSQDAGTDSRIR
CCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHH
GRIEGIFAELPAFADVEVTVSDGVVTLSGTVPDEADIERAENIVGRINGVVTIENGLERD
HHHHHHHHHCCCCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHCCEEEECCCCCCC
LSVDGGIGALEDLTERGTGLIELAPLLLAALIVAAAIGAIGYLIAGFGALWRRIAPNVFL
CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
AEVLRTAIRFIFVIAGLVIALDMLGAGALLGAVLGGAGVIGLALGFAMRDTVENYVASLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
LSLRQPFRANDHVVIDDKEGRVIRLTSRATILMTLEGNHLRIPNSQVFKAIILNYTTNPN
HHHHCCCCCCCCEEEECCCCCEEEEECCEEEEEEECCCEEECCCHHHHHHHHHEECCCCC
RRFEFEMGIDADDDADAARALGRQTLGDLPFVLSDPPPEARTEAVGDSNIVIKFLGWVDQ
CEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHCCCCCEEEEEECCCCC
READWHKARSRAIAAVKVALEDGGFGLPEPIYRLRFDPRTGPLPFENIEKTKGSEPAPTP
CHHHHHHHHHHHEEEEEEEEECCCCCCCCHHHHEEECCCCCCCCHHHHHHCCCCCCCCCC
PPAKAATAPVEEDVSATDEIAQMVEKERQGEADDSADLLDSSKPSEY
CCCCCCCCCCHHHCCHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCC
>Mature Secondary Structure
MRAGLANILKSLAATWLLFAVASPAHAVLPGAPEGAAEPASTETQAIEQSQDAGTDSRIR
CCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHH
GRIEGIFAELPAFADVEVTVSDGVVTLSGTVPDEADIERAENIVGRINGVVTIENGLERD
HHHHHHHHHCCCCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHCCEEEECCCCCCC
LSVDGGIGALEDLTERGTGLIELAPLLLAALIVAAAIGAIGYLIAGFGALWRRIAPNVFL
CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
AEVLRTAIRFIFVIAGLVIALDMLGAGALLGAVLGGAGVIGLALGFAMRDTVENYVASLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
LSLRQPFRANDHVVIDDKEGRVIRLTSRATILMTLEGNHLRIPNSQVFKAIILNYTTNPN
HHHHCCCCCCCCEEEECCCCCEEEEECCEEEEEEECCCEEECCCHHHHHHHHHEECCCCC
RRFEFEMGIDADDDADAARALGRQTLGDLPFVLSDPPPEARTEAVGDSNIVIKFLGWVDQ
CEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHCCCCCEEEEEECCCCC
READWHKARSRAIAAVKVALEDGGFGLPEPIYRLRFDPRTGPLPFENIEKTKGSEPAPTP
CHHHHHHHHHHHEEEEEEEEECCCCCCCCHHHHEEECCCCCCCCHHHHHHCCCCCCCCCC
PPAKAATAPVEEDVSATDEIAQMVEKERQGEADDSADLLDSSKPSEY
CCCCCCCCCCHHHCCHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]