| Definition | Erythrobacter litoralis HTCC2594 chromosome, complete genome. |
|---|---|
| Accession | NC_007722 |
| Length | 3,052,398 |
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The map label for this gene is lhr [C]
Identifier: 85375572
GI number: 85375572
Start: 2766931
End: 2769387
Strand: Direct
Name: lhr [C]
Synonym: ELI_13725
Alternate gene names: 85375572
Gene position: 2766931-2769387 (Clockwise)
Preceding gene: 85375571
Following gene: 85375580
Centisome position: 90.65
GC content: 65.2
Gene sequence:
>2457_bases ATGCAGGCCGAAATTCCTCCTGAAATTGCCGACTGGTTCGCTGGGCGCGGCTGGCGCGTGCGGCGGCACCAGGCGGAAAT GCTGGCTGCCGCCGACAGCGGCAAGCATGCGCTGCTGGTGGCCGATACCGGCGCGGGCAAGACGCTCGGCGGGTTTTTGC CGACACTGGCAGATTTCTGTCCGTCGCGGCTCGGCGATGCAGCGCCGCCGGAGGGGTTGCATACGCTCTACGTATCGCCG CTGAAGGCGCTGGCGCACGATGTGCAGCGCAATCTCGTGACCCCGGTCGAAGAAATGGGGCTGCCGATCCGGATCGAGAC GCGCAGCGGGGACACGCCCTCCGATCGCAAGAAGCGGCAGCGCAGCAAGCCGCCGCATATCCTGCTGACGACGCCGGAGA GCCTGTCGCTGCTGCTGAGCTATCCCGACAGCTTCGACCTGTTCGCCTCGCTCAAGCGGATCGTCATCGATGAAGTGCAC GCCTTCGCCACCGGCAAGCGCGGGGACCTGCTGGCGCTCAGCCTGGCACGGCTGCAGGCGATCGCGCCGCAGCTCCAGCG GGTGGCGCTGTCCGCGACGCTGGCCAATCCGGAGGGCTTTCGCGAATGGCTTGCGCCCCTGAAAACAGGCGACGTCGGAG AGATCGACACGGTCGCGTTGGTGGAGGGAGAGCCAGGTGCCCCGGCCGAGGTCGAAATCCTGCTGCCGGAAGAAGAGCGG GTCCCCTGGGGCGGCCATGCCGCGACCTGGGCGATCCCGCAACTTTACGATCTGGTGCGCGCCAATCGCACCACGCTGAT ATTCACGAACACGCGTTTTCTGGCCGAGTATACCTTCCAGAACCTGTGGGACGTCAACGAGGATACGCTTCCGATAGGGA TCCATCACGGCTCGCTCAGCCGCGAGGCGCGGCGCAAGGTCGAAGGCGCGATGGCGCGCGGCGAATTGCGCGCGTTGGTA GCGACGGCGAGCCTCGATCTGGGGGTCGACTGGGGCGACATCGATTGCGTGGTGCAGATGGGCGCGCCCAAGGGTTCGTC GCGGCTGCTGCAACGCGTGGGCCGCGCCAATCACCGGCTCGACCAGCCCAGCCGCGCGGTGCTGGTGCCGGGCAATCGGT TCGAATTCCTTGAAGCGCAGGCCGCCAAGGACGCTGTCGATGCCGGTATGCGCGACGGGGAGGAGTTTCGCCCTGGCGGG CTGGACGTGCTCGCCCAGCATGTCATGGCCTGCGCGTGCGCCGCGCCGTTCGACGAAGATGAATTGCTTGCCGAGATCCG TTCTTCGCTCGCCTACGCTTGGGTCGACGAGACAGTTTTTCAGCGCGTGCTCGAATTCGTCGCGACCGGCGGATATGCGC TCAAGGCCTACGACAAGTTTCGCCGGATCGTGCGCGACAGGAGCGGTACCTGGCGGCTGACGCATCCGGAAAATGCGGCC AGGCACCGCTTGAACGCAGGCATCATCATCGATGGCGAGATGTTGCAGGTGCGCTTTCGCAACGGCCGCTCGCTGGGCAA GGTAGAGGAACGCTTTGCCATCGCGCTGAAGCCGGGCGACACGTTCTCGTTTGCCGGGCAAGCGCTGGAAGTCGAGCAGT TGCGCGACATGGAAGTGATCGTCCGTGCGAGCAAGAAATCGGCGATGATCCCCAGCTACGGCGGCGCGCGCATGCCGCTC ACGACGCATCTTGCAGACCGGGTGCGCGCAATGCTGGTCGACCGGCCGGGTTGGGCGCGCTTTCCCGATGATGTGCGCGA ATGGCTGGAAGTGCAGGACTGGCGCAGCCAGCTGCCCGGGCCCGACAACCTGCTGGTCGAATCCTTTCCCCATGCCCAGC GGCATTACAGCGTCTATTACACTTTTGCCGGCTGGAACGCGAACCAGTCGCTCGGGATGCTGGTCACGCAGCGCATGGAA GATCGCGGGCTGATGCCGGGTGCCTTCGTGGCCAATGACTATTCGCTCGCCGTATGGGGTCTCAAGCCGGTGAAGGATCC GGCGCCGCTCCTCTCGCCCGACATTCTCACGGACGAATTCGTTTCGTGGGTTCAGGAATCGCACCTTTTGCGGCGGTCAT TCCGTGAAGTGGCGGTGATCGGCGGGCTGGTCGAGCGGCAACAGCCGGGGAAGCGCAAGTCGGGCAAGCAGGTCACATTC TCGACGGACCTGATCTACGATGTGCTGAAGAAATACGAGCCGGATCATGTGCTGCTGGAGGCGGCCTGGGCAGATGCGCG CGAACGGCTGACCGATATCGGTCGCCTGCAGACAGTTCTCGAACAATCGCAGGACCAGCTGGTCCATGTCGAGCTCGAGC GCGTCAGCCCGCTCGCGGTGCCGGTGATGGTGATAATCGGGCGCGAGAGCTTGCCGCAGGGCGCGGTCGACGACGAACTG CTGCTGGAAGCGGAAAGCATTGCCGCCGCTGCCATGCGGGTGGACGACCTGCCCTAG
Upstream 100 bases:
>100_bases GCGCCCAAGAAGCCCGACGAGACGATGGAGGCCGAGACCTCCGGCGAGAGCTGATCGCCGCTTGCGGAACCAGGCGCGCA CCTGCATCGCTTGACTGGTG
Downstream 100 bases:
>100_bases TCAGGGGCGGAGAGCCTTCACTCGAACCACAGGTCGCACTCCCGGTAGTCGGGGGCGACCAGCCGCTCGAAATCGGGCGG GTTCTCGTAATCGGCGAAGC
Product: ATP-dependent RNA helicase, DEAD/DEAH box family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 818; Mature: 818
Protein sequence:
>818_residues MQAEIPPEIADWFAGRGWRVRRHQAEMLAAADSGKHALLVADTGAGKTLGGFLPTLADFCPSRLGDAAPPEGLHTLYVSP LKALAHDVQRNLVTPVEEMGLPIRIETRSGDTPSDRKKRQRSKPPHILLTTPESLSLLLSYPDSFDLFASLKRIVIDEVH AFATGKRGDLLALSLARLQAIAPQLQRVALSATLANPEGFREWLAPLKTGDVGEIDTVALVEGEPGAPAEVEILLPEEER VPWGGHAATWAIPQLYDLVRANRTTLIFTNTRFLAEYTFQNLWDVNEDTLPIGIHHGSLSREARRKVEGAMARGELRALV ATASLDLGVDWGDIDCVVQMGAPKGSSRLLQRVGRANHRLDQPSRAVLVPGNRFEFLEAQAAKDAVDAGMRDGEEFRPGG LDVLAQHVMACACAAPFDEDELLAEIRSSLAYAWVDETVFQRVLEFVATGGYALKAYDKFRRIVRDRSGTWRLTHPENAA RHRLNAGIIIDGEMLQVRFRNGRSLGKVEERFAIALKPGDTFSFAGQALEVEQLRDMEVIVRASKKSAMIPSYGGARMPL TTHLADRVRAMLVDRPGWARFPDDVREWLEVQDWRSQLPGPDNLLVESFPHAQRHYSVYYTFAGWNANQSLGMLVTQRME DRGLMPGAFVANDYSLAVWGLKPVKDPAPLLSPDILTDEFVSWVQESHLLRRSFREVAVIGGLVERQQPGKRKSGKQVTF STDLIYDVLKKYEPDHVLLEAAWADARERLTDIGRLQTVLEQSQDQLVHVELERVSPLAVPVMVIIGRESLPQGAVDDEL LLEAESIAAAAMRVDDLP
Sequences:
>Translated_818_residues MQAEIPPEIADWFAGRGWRVRRHQAEMLAAADSGKHALLVADTGAGKTLGGFLPTLADFCPSRLGDAAPPEGLHTLYVSP LKALAHDVQRNLVTPVEEMGLPIRIETRSGDTPSDRKKRQRSKPPHILLTTPESLSLLLSYPDSFDLFASLKRIVIDEVH AFATGKRGDLLALSLARLQAIAPQLQRVALSATLANPEGFREWLAPLKTGDVGEIDTVALVEGEPGAPAEVEILLPEEER VPWGGHAATWAIPQLYDLVRANRTTLIFTNTRFLAEYTFQNLWDVNEDTLPIGIHHGSLSREARRKVEGAMARGELRALV ATASLDLGVDWGDIDCVVQMGAPKGSSRLLQRVGRANHRLDQPSRAVLVPGNRFEFLEAQAAKDAVDAGMRDGEEFRPGG LDVLAQHVMACACAAPFDEDELLAEIRSSLAYAWVDETVFQRVLEFVATGGYALKAYDKFRRIVRDRSGTWRLTHPENAA RHRLNAGIIIDGEMLQVRFRNGRSLGKVEERFAIALKPGDTFSFAGQALEVEQLRDMEVIVRASKKSAMIPSYGGARMPL TTHLADRVRAMLVDRPGWARFPDDVREWLEVQDWRSQLPGPDNLLVESFPHAQRHYSVYYTFAGWNANQSLGMLVTQRME DRGLMPGAFVANDYSLAVWGLKPVKDPAPLLSPDILTDEFVSWVQESHLLRRSFREVAVIGGLVERQQPGKRKSGKQVTF STDLIYDVLKKYEPDHVLLEAAWADARERLTDIGRLQTVLEQSQDQLVHVELERVSPLAVPVMVIIGRESLPQGAVDDEL LLEAESIAAAAMRVDDLP >Mature_818_residues MQAEIPPEIADWFAGRGWRVRRHQAEMLAAADSGKHALLVADTGAGKTLGGFLPTLADFCPSRLGDAAPPEGLHTLYVSP LKALAHDVQRNLVTPVEEMGLPIRIETRSGDTPSDRKKRQRSKPPHILLTTPESLSLLLSYPDSFDLFASLKRIVIDEVH AFATGKRGDLLALSLARLQAIAPQLQRVALSATLANPEGFREWLAPLKTGDVGEIDTVALVEGEPGAPAEVEILLPEEER VPWGGHAATWAIPQLYDLVRANRTTLIFTNTRFLAEYTFQNLWDVNEDTLPIGIHHGSLSREARRKVEGAMARGELRALV ATASLDLGVDWGDIDCVVQMGAPKGSSRLLQRVGRANHRLDQPSRAVLVPGNRFEFLEAQAAKDAVDAGMRDGEEFRPGG LDVLAQHVMACACAAPFDEDELLAEIRSSLAYAWVDETVFQRVLEFVATGGYALKAYDKFRRIVRDRSGTWRLTHPENAA RHRLNAGIIIDGEMLQVRFRNGRSLGKVEERFAIALKPGDTFSFAGQALEVEQLRDMEVIVRASKKSAMIPSYGGARMPL TTHLADRVRAMLVDRPGWARFPDDVREWLEVQDWRSQLPGPDNLLVESFPHAQRHYSVYYTFAGWNANQSLGMLVTQRME DRGLMPGAFVANDYSLAVWGLKPVKDPAPLLSPDILTDEFVSWVQESHLLRRSFREVAVIGGLVERQQPGKRKSGKQVTF STDLIYDVLKKYEPDHVLLEAAWADARERLTDIGRLQTVLEQSQDQLVHVELERVSPLAVPVMVIIGRESLPQGAVDDEL LLEAESIAAAAMRVDDLP
Specific function: Unknown
COG id: COG1201
COG function: function code R; Lhr-like helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Homo sapiens, GI38569505, Length=327, Percent_Identity=25.3822629969419, Blast_Score=70, Evalue=6e-12, Organism=Homo sapiens, GI38569503, Length=327, Percent_Identity=25.3822629969419, Blast_Score=70, Evalue=6e-12, Organism=Escherichia coli, GI1787942, Length=870, Percent_Identity=26.0919540229885, Blast_Score=209, Evalue=8e-55, Organism=Saccharomyces cerevisiae, GI6320497, Length=380, Percent_Identity=26.5789473684211, Blast_Score=99, Evalue=3e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR013701 - InterPro: IPR011545 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR017170 [H]
Pfam domain/function: PF00270 DEAD; PF08494 DEAD_assoc; PF00271 Helicase_C [H]
EC number: 3.6.1.-
Molecular weight: Translated: 90672; Mature: 90672
Theoretical pI: Translated: 5.67; Mature: 5.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQAEIPPEIADWFAGRGWRVRRHQAEMLAAADSGKHALLVADTGAGKTLGGFLPTLADFC CCCCCCCHHHHHHCCCCCEEHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHH PSRLGDAAPPEGLHTLYVSPLKALAHDVQRNLVTPVEEMGLPIRIETRSGDTPSDRKKRQ HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCEEEECCCCCCCHHHHHHH RSKPPHILLTTPESLSLLLSYPDSFDLFASLKRIVIDEVHAFATGKRGDLLALSLARLQA HCCCCEEEEECCHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH IAPQLQRVALSATLANPEGFREWLAPLKTGDVGEIDTVALVEGEPGAPAEVEILLPEEER HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCCC VPWGGHAATWAIPQLYDLVRANRTTLIFTNTRFLAEYTFQNLWDVNEDTLPIGIHHGSLS CCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCCCCEEEEEECCCCC REARRKVEGAMARGELRALVATASLDLGVDWGDIDCVVQMGAPKGSSRLLQRVGRANHRL HHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCC DQPSRAVLVPGNRFEFLEAQAAKDAVDAGMRDGEEFRPGGLDVLAQHVMACACAAPFDED CCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHH ELLAEIRSSLAYAWVDETVFQRVLEFVATGGYALKAYDKFRRIVRDRSGTWRLTHPENAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCEEEECCCHHH RHRLNAGIIIDGEMLQVRFRNGRSLGKVEERFAIALKPGDTFSFAGQALEVEQLRDMEVI HHHCCCCEEECCCEEEEEECCCCCCCCCCCCEEEEECCCCCHHHCCCEEEHHHHHCHHHH VRASKKSAMIPSYGGARMPLTTHLADRVRAMLVDRPGWARFPDDVREWLEVQDWRSQLPG HEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCC PDNLLVESFPHAQRHYSVYYTFAGWNANQSLGMLVTQRMEDRGLMPGAFVANDYSLAVWG CCCHHHHCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEECCCEEEEEC LKPVKDPAPLLSPDILTDEFVSWVQESHLLRRSFREVAVIGGLVERQQPGKRKSGKQVTF CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE STDLIYDVLKKYEPDHVLLEAAWADARERLTDIGRLQTVLEQSQDQLVHVELERVSPLAV HHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHCCCHHE PVMVIIGRESLPQGAVDDELLLEAESIAAAAMRVDDLP EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MQAEIPPEIADWFAGRGWRVRRHQAEMLAAADSGKHALLVADTGAGKTLGGFLPTLADFC CCCCCCCHHHHHHCCCCCEEHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHH PSRLGDAAPPEGLHTLYVSPLKALAHDVQRNLVTPVEEMGLPIRIETRSGDTPSDRKKRQ HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCEEEECCCCCCCHHHHHHH RSKPPHILLTTPESLSLLLSYPDSFDLFASLKRIVIDEVHAFATGKRGDLLALSLARLQA HCCCCEEEEECCHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH IAPQLQRVALSATLANPEGFREWLAPLKTGDVGEIDTVALVEGEPGAPAEVEILLPEEER HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCCC VPWGGHAATWAIPQLYDLVRANRTTLIFTNTRFLAEYTFQNLWDVNEDTLPIGIHHGSLS CCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCCCCEEEEEECCCCC REARRKVEGAMARGELRALVATASLDLGVDWGDIDCVVQMGAPKGSSRLLQRVGRANHRL HHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCC DQPSRAVLVPGNRFEFLEAQAAKDAVDAGMRDGEEFRPGGLDVLAQHVMACACAAPFDED CCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHH ELLAEIRSSLAYAWVDETVFQRVLEFVATGGYALKAYDKFRRIVRDRSGTWRLTHPENAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCEEEECCCHHH RHRLNAGIIIDGEMLQVRFRNGRSLGKVEERFAIALKPGDTFSFAGQALEVEQLRDMEVI HHHCCCCEEECCCEEEEEECCCCCCCCCCCCEEEEECCCCCHHHCCCEEEHHHHHCHHHH VRASKKSAMIPSYGGARMPLTTHLADRVRAMLVDRPGWARFPDDVREWLEVQDWRSQLPG HEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCC PDNLLVESFPHAQRHYSVYYTFAGWNANQSLGMLVTQRMEDRGLMPGAFVANDYSLAVWG CCCHHHHCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEECCCEEEEEC LKPVKDPAPLLSPDILTDEFVSWVQESHLLRRSFREVAVIGGLVERQQPGKRKSGKQVTF CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE STDLIYDVLKKYEPDHVLLEAAWADARERLTDIGRLQTVLEQSQDQLVHVELERVSPLAV HHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHCCCHHE PVMVIIGRESLPQGAVDDELLLEAESIAAAAMRVDDLP EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on acid anhydrides [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]