Click here to switch to the map view.

The map label for this gene is yddE [C]

Identifier: 85375516

GI number: 85375516

Start: 2709394

End: 2710212

Strand: Direct

Name: yddE [C]

Synonym: ELI_13445

Alternate gene names: 85375516

Gene position: 2709394-2710212 (Clockwise)

Preceding gene: 85375515

Following gene: 85375518

Centisome position: 88.76

GC content: 67.52

Gene sequence:

>819_bases
ATGAGCGCGCCGAACACGCTACCCTACTGGCATGTCGATGCCTTTGCCGACCGGCCCTTTGCCGGCAACCAGGCGGCGGT
CATGCCGCTCGACGAATGGCTGCCCGACGAAGTGCTGCAGGCCATCGGCGAGGAGAACAATTTCGCCGAGACCGCCTTCA
TCTTGCCCGATGCCAGTGGCGAGACCGACTTCGAACTGCGGTGGTTCACTCCGGCGATGGAAATCCGCCTGTGCGGGCAT
GCCACGCTGGCGAGCGGCCATGTCGCGCTCGCCCATATGCCGCAGTTTGCAGAGCGTGACCTCGTCACCTTTCGCACCCG
CAGGGCGGGCAATCTGGAAGTGCGGCGCGCCGAGACCGGCTACGAGCTGGCGCTTCCCGCAATCCCGACCGAGCGCAGCG
AATGGCCCGAGGCGGTGGAACTACTGGGCGCGAAGCCGCAGGAAGTCTGGCTCAACCCGGACCGCTACGGCATCTACCTG
TTCGAAAGCGAGGAGCAGGTCCGTGCGCTCGATCCCGATCTCAAGGGACTCGGCGCGCTGGGGGACGACCAGTTCATCTG
CACCGCGCCCGGCAGCGAGACCGATGTCGTGAGCCGGGTGTTCGTGCCCGGCGGCGGCGTTGACGAGGACAGTTTCACCG
GCTCGGCCCACGCTGCGCTGACCCATTTCTGGGCCAACCGGCTTGGCCGCGACAGCTTCACCGCCTTCCAGGTCTCGCGG
CGCGGCGGGCATGCGGCGTGTCGACTCGACGGCGAGCGCGCCTGGCTCGGCGGGCCCTGCGTGACAGTGGTCGAGGGCAG
CTTCTACCTCGCGGGATAA

Upstream 100 bases:

>100_bases
ATGCCGAGATATTGATCCATATCGACCCCGAGGGACATGTCGACGAGCCGGGCAACCCGCTGGTCGAGAAGGACGAATTC
GCCCGGCTGGAGGATGACAT

Downstream 100 bases:

>100_bases
AGCTCGACGATATCACGCAATTGCGCGAGCAGCACCTGGCGTTGCGGCGTGTCGGAATGGCCGAGCCGGACCACGGTAAG
CTGCTGGCGCGGCGAGACCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MSAPNTLPYWHVDAFADRPFAGNQAAVMPLDEWLPDEVLQAIGEENNFAETAFILPDASGETDFELRWFTPAMEIRLCGH
ATLASGHVALAHMPQFAERDLVTFRTRRAGNLEVRRAETGYELALPAIPTERSEWPEAVELLGAKPQEVWLNPDRYGIYL
FESEEQVRALDPDLKGLGALGDDQFICTAPGSETDVVSRVFVPGGGVDEDSFTGSAHAALTHFWANRLGRDSFTAFQVSR
RGGHAACRLDGERAWLGGPCVTVVEGSFYLAG

Sequences:

>Translated_272_residues
MSAPNTLPYWHVDAFADRPFAGNQAAVMPLDEWLPDEVLQAIGEENNFAETAFILPDASGETDFELRWFTPAMEIRLCGH
ATLASGHVALAHMPQFAERDLVTFRTRRAGNLEVRRAETGYELALPAIPTERSEWPEAVELLGAKPQEVWLNPDRYGIYL
FESEEQVRALDPDLKGLGALGDDQFICTAPGSETDVVSRVFVPGGGVDEDSFTGSAHAALTHFWANRLGRDSFTAFQVSR
RGGHAACRLDGERAWLGGPCVTVVEGSFYLAG
>Mature_271_residues
SAPNTLPYWHVDAFADRPFAGNQAAVMPLDEWLPDEVLQAIGEENNFAETAFILPDASGETDFELRWFTPAMEIRLCGHA
TLASGHVALAHMPQFAERDLVTFRTRRAGNLEVRRAETGYELALPAIPTERSEWPEAVELLGAKPQEVWLNPDRYGIYLF
ESEEQVRALDPDLKGLGALGDDQFICTAPGSETDVVSRVFVPGGGVDEDSFTGSAHAALTHFWANRLGRDSFTAFQVSRR
GGHAACRLDGERAWLGGPCVTVVEGSFYLAG

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=288, Percent_Identity=36.4583333333333, Blast_Score=135, Evalue=3e-32,
Organism=Homo sapiens, GI74316009, Length=248, Percent_Identity=36.2903225806452, Blast_Score=118, Evalue=5e-27,
Organism=Escherichia coli, GI1787737, Length=235, Percent_Identity=29.7872340425532, Blast_Score=80, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17542160, Length=314, Percent_Identity=30.8917197452229, Blast_Score=115, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI17542154, Length=314, Percent_Identity=30.8917197452229, Blast_Score=115, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI17542158, Length=323, Percent_Identity=29.4117647058824, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17542152, Length=323, Percent_Identity=29.4117647058824, Blast_Score=99, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6321818, Length=290, Percent_Identity=24.4827586206897, Blast_Score=73, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 29826; Mature: 29694

Theoretical pI: Translated: 4.36; Mature: 4.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAPNTLPYWHVDAFADRPFAGNQAAVMPLDEWLPDEVLQAIGEENNFAETAFILPDASG
CCCCCCCCEEEEHHHCCCCCCCCCEEEEEHHHCCHHHHHHHHCCCCCCEEEEEEEECCCC
ETDFELRWFTPAMEIRLCGHATLASGHVALAHMPQFAERDLVTFRTRRAGNLEVRRAETG
CCCEEEEEECCEEEEEEECCEEECCCCEEEECCCCHHHCCCEEEEECCCCCEEEEEECCC
YELALPAIPTERSEWPEAVELLGAKPQEVWLNPDRYGIYLFESEEQVRALDPDLKGLGAL
CEEEECCCCCCCCCCHHHHHHHCCCCHHEEECCCCEEEEEEECCCHHHHCCCCCHHCCCC
GDDQFICTAPGSETDVVSRVFVPGGGVDEDSFTGSAHAALTHFWANRLGRDSFTAFQVSR
CCCCEEEECCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEC
RGGHAACRLDGERAWLGGPCVTVVEGSFYLAG
CCCCEEEEECCCEEEECCCEEEEEECEEEECC
>Mature Secondary Structure 
SAPNTLPYWHVDAFADRPFAGNQAAVMPLDEWLPDEVLQAIGEENNFAETAFILPDASG
CCCCCCCEEEEHHHCCCCCCCCCEEEEEHHHCCHHHHHHHHCCCCCCEEEEEEEECCCC
ETDFELRWFTPAMEIRLCGHATLASGHVALAHMPQFAERDLVTFRTRRAGNLEVRRAETG
CCCEEEEEECCEEEEEEECCEEECCCCEEEECCCCHHHCCCEEEEECCCCCEEEEEECCC
YELALPAIPTERSEWPEAVELLGAKPQEVWLNPDRYGIYLFESEEQVRALDPDLKGLGAL
CEEEECCCCCCCCCCHHHHHHHCCCCHHEEECCCCEEEEEEECCCHHHHCCCCCHHCCCC
GDDQFICTAPGSETDVVSRVFVPGGGVDEDSFTGSAHAALTHFWANRLGRDSFTAFQVSR
CCCCEEEECCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEC
RGGHAACRLDGERAWLGGPCVTVVEGSFYLAG
CCCCEEEEECCCEEEECCCEEEEEECEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]