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The map label for this gene is ydhM [C]

Identifier: 85375030

GI number: 85375030

Start: 2226183

End: 2226782

Strand: Direct

Name: ydhM [C]

Synonym: ELI_11015

Alternate gene names: 85375030

Gene position: 2226183-2226782 (Clockwise)

Preceding gene: 85375026

Following gene: 85375031

Centisome position: 72.93

GC content: 62.0

Gene sequence:

>600_bases
ATGAATGCCGCGACCCGCCAGCGCATCGTCATGACCGCGCTCGAACTGTTCTATGAAAAGGGGTTCAACTCGACCTCGAT
CGCGGACATCCTCAGCCGCAGCCAGGTCCATTCGGGCAGCCTTTATCATTTCTTCCCCGGCAAGCAGGACCTGCTCGTCG
CCGTGCTCGAATTCTATCGCGACGGCATTCGGGAAAACCTGCTCGATGTCGCATGGGTCGAGGTGGACGATCCGATCGAC
AGGGTCTTTGCGCTGCTCAATGGCTATCGCGTCGGCTTGCTGATGAGCGACTATCGCCTCGGCTGCCCGATCGGCAATCT
GGCGCTGGAAATTGCCGAGCCCGATCCGCGCATCCGCGACCTGTTGCAGGTCAATTTCACCAACTGGATCGGCGCGGTCG
AGCAGTGCCTCGACGAGGCCGGCGACCGCCTGCCGCACGACACCGACCGGCGCGCTTTGGCCGAATTCATCCTCACCACC
ATGGAGGGCGCGATCATGCAGGCACGCACGGCGCGGGACATCGCCGTGTTCGACCGCAACATCGGCGTCCTGCGCGCTCA
TATCGACACGCTGACGGAAAAGGCGAAACAACCGACATGA

Upstream 100 bases:

>100_bases
CGATCAGGATGATCGCCTGGCCGGACCTCTTGCGGAGGCCATGACTTGATCGATCGATCAAGTCATGCTTGATTGGTCAT
TCAACCGGAGGGTGATTCGC

Downstream 100 bases:

>100_bases
CGCTCAAGACGCTAAGACAGGCCGTGGCGCTGGCCGCACTGGTGGCAGCGGCGCCCGCTGCGGCCAACGAAGCTGCGATC
ACCTCATCCGTGGTCGCCGA

Product: TetR family transcriptional regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MNAATRQRIVMTALELFYEKGFNSTSIADILSRSQVHSGSLYHFFPGKQDLLVAVLEFYRDGIRENLLDVAWVEVDDPID
RVFALLNGYRVGLLMSDYRLGCPIGNLALEIAEPDPRIRDLLQVNFTNWIGAVEQCLDEAGDRLPHDTDRRALAEFILTT
MEGAIMQARTARDIAVFDRNIGVLRAHIDTLTEKAKQPT

Sequences:

>Translated_199_residues
MNAATRQRIVMTALELFYEKGFNSTSIADILSRSQVHSGSLYHFFPGKQDLLVAVLEFYRDGIRENLLDVAWVEVDDPID
RVFALLNGYRVGLLMSDYRLGCPIGNLALEIAEPDPRIRDLLQVNFTNWIGAVEQCLDEAGDRLPHDTDRRALAEFILTT
MEGAIMQARTARDIAVFDRNIGVLRAHIDTLTEKAKQPT
>Mature_199_residues
MNAATRQRIVMTALELFYEKGFNSTSIADILSRSQVHSGSLYHFFPGKQDLLVAVLEFYRDGIRENLLDVAWVEVDDPID
RVFALLNGYRVGLLMSDYRLGCPIGNLALEIAEPDPRIRDLLQVNFTNWIGAVEQCLDEAGDRLPHDTDRRALAEFILTT
MEGAIMQARTARDIAVFDRNIGVLRAHIDTLTEKAKQPT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22451; Mature: 22451

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAATRQRIVMTALELFYEKGFNSTSIADILSRSQVHSGSLYHFFPGKQDLLVAVLEFYR
CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHH
DGIRENLLDVAWVEVDDPIDRVFALLNGYRVGLLMSDYRLGCPIGNLALEIAEPDPRIRD
HHHHHHHHHHHEEECCCHHHHHHHHHCCHHHEEEECCCCCCCCCCHHEEEECCCCHHHHH
LLQVNFTNWIGAVEQCLDEAGDRLPHDTDRRALAEFILTTMEGAIMQARTARDIAVFDRN
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
IGVLRAHIDTLTEKAKQPT
CHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNAATRQRIVMTALELFYEKGFNSTSIADILSRSQVHSGSLYHFFPGKQDLLVAVLEFYR
CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHH
DGIRENLLDVAWVEVDDPIDRVFALLNGYRVGLLMSDYRLGCPIGNLALEIAEPDPRIRD
HHHHHHHHHHHEEECCCHHHHHHHHHCCHHHEEEECCCCCCCCCCHHEEEECCCCHHHHH
LLQVNFTNWIGAVEQCLDEAGDRLPHDTDRRALAEFILTTMEGAIMQARTARDIAVFDRN
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
IGVLRAHIDTLTEKAKQPT
CHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]