Click here to switch to the map view.

The map label for this gene is rpoZ

Identifier: 85375023

GI number: 85375023

Start: 2220000

End: 2220344

Strand: Direct

Name: rpoZ

Synonym: ELI_10980

Alternate gene names: 85375023

Gene position: 2220000-2220344 (Clockwise)

Preceding gene: 85375021

Following gene: 85375024

Centisome position: 72.73

GC content: 62.03

Gene sequence:

>345_bases
ATGGCGCGCGTTACCGTCGAAGATTGCGTCGACAAAGTTCCCAACCGTTTCGACCTCGTCCTGCTGGCCGCACAGCGCGC
TCGCGAAATCTCGGGCGGTGCGGAAATGACGATCGACCGTGATCGCGACAAGAACCCCGTCGTCGCGCTGCGCGAGATTG
CCGAGCAGACAATCAAGCCGAAGGACCTTCAGGAAGCGGTCGTCACCAATCTGCAGAAGATCCTGCCGGACGATGACGAC
GAATTCGATGAAGTCGGCTCGCTCAGCCAGTCGGCAGAGGCGCTGCGCATCACCGCTTCCGCACCGACGCGCTCGACCTC
GATCGGGGCCGATTTCGACGGTTGA

Upstream 100 bases:

>100_bases
TTAGCGCGCACCCCATTAGCGCACGATTTCTTGACTCGTTCCGAGCCCCACCCTATTTCGCGCGCAATCCCGAAATTCAT
TTTTGTCTGGAGTGCCCGAT

Downstream 100 bases:

>100_bases
TCGCCGCGCTAAGTGACAAAAGAGGCCGTCCCGTTTCGGGGCGGCTTTTTTTGTGCGCGTGCTCGTGCTGGCCTGTCGCG
GAATCGTAAGGCTTGTCATG

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 114; Mature: 113

Protein sequence:

>114_residues
MARVTVEDCVDKVPNRFDLVLLAAQRAREISGGAEMTIDRDRDKNPVVALREIAEQTIKPKDLQEAVVTNLQKILPDDDD
EFDEVGSLSQSAEALRITASAPTRSTSIGADFDG

Sequences:

>Translated_114_residues
MARVTVEDCVDKVPNRFDLVLLAAQRAREISGGAEMTIDRDRDKNPVVALREIAEQTIKPKDLQEAVVTNLQKILPDDDD
EFDEVGSLSQSAEALRITASAPTRSTSIGADFDG
>Mature_113_residues
ARVTVEDCVDKVPNRFDLVLLAAQRAREISGGAEMTIDRDRDKNPVVALREIAEQTIKPKDLQEAVVTNLQKILPDDDDE
FDEVGSLSQSAEALRITASAPTRSTSIGADFDG

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

Organism=Escherichia coli, GI1790081, Length=64, Percent_Identity=53.125, Blast_Score=63, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_ERYLH (Q2N7Q3)

Other databases:

- EMBL:   CP000157
- RefSeq:   YP_459085.1
- STRING:   Q2N7Q3
- GeneID:   3869007
- GenomeReviews:   CP000157_GR
- KEGG:   eli:ELI_10980
- NMPDR:   fig|314225.3.peg.830
- eggNOG:   COG1758
- HOGENOM:   HBG742204
- OMA:   QRARQIS
- PhylomeDB:   Q2N7Q3
- ProtClustDB:   PRK00392
- BioCyc:   ELIT314225:ELI_10980-MONOMER
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 12442; Mature: 12311

Theoretical pI: Translated: 4.19; Mature: 4.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVTVEDCVDKVPNRFDLVLLAAQRAREISGGAEMTIDRDRDKNPVVALREIAEQTIKP
CCCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHCCCC
KDLQEAVVTNLQKILPDDDDEFDEVGSLSQSAEALRITASAPTRSTSIGADFDG
CHHHHHHHHHHHHHCCCCCCCHHHHHCHHCCCCEEEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ARVTVEDCVDKVPNRFDLVLLAAQRAREISGGAEMTIDRDRDKNPVVALREIAEQTIKP
CCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHCCCC
KDLQEAVVTNLQKILPDDDDEFDEVGSLSQSAEALRITASAPTRSTSIGADFDG
CHHHHHHHHHHHHHCCCCCCCHHHHHCHHCCCCEEEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA