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The map label for this gene is xerD [H]

Identifier: 85374992

GI number: 85374992

Start: 2192258

End: 2193460

Strand: Direct

Name: xerD [H]

Synonym: ELI_10825

Alternate gene names: 85374992

Gene position: 2192258-2193460 (Clockwise)

Preceding gene: 85374989

Following gene: 85374993

Centisome position: 71.82

GC content: 66.33

Gene sequence:

>1203_bases
ATGTCCGATATCTCGCCCCCCTCCGCGTTGCCCGGTAGCGCTCTCGCCGCGCTCGAAACCGACCTCGCGCTCGCGCTACG
CGCGCCGAATGTCGCCGTCGATCGCGAACTGCTCGCCGCTTACGTGGAGGCGGCCGCGCCCAATTCGATCCGCGCGCTGC
GGCAGGATGTCGAGGCGTTCGACCTGTGGTGCCGCCGCAGCGACGCTCGCGCGTTTCCGGCAACGCCCGGGATGGTCGCG
GACTGGCTGAAGCATCGGGCGAGCGAGGGTGCCGCGCCCGCCTCGCTGGTGCGGTACAAAGCATCGATCGCCAAGGCGCA
CCGGCTGCTCGACCTCGACGATCCCACCAAGCACGAGATCTGCCGGCTCGCGATCGCGGCGCATCGCCGCAATGTCGGCT
CACGGCAAAAGCAGGCGCGGCCGCTGCGATTTCGCGGCGCGGTCAAAGATCCGGTGCAGGCCACACCGCGCGGCATCCAT
ATCCGCGCGATCCTCGGGGCCTGCGATAATACACCCACCGGGCTGCGCAATCGCGCGCTGCTCTCGGTCGCCTACGATAC
CGGCCTGCGCGCGAGCGAGTTGGTCGCCGTCGCAGCCGAGGATATCGTCGAGGCGCTCGATCCCGATGCACGTCTACTGC
GGATCGGGCGGCACAAGGGCGACCAGGAGGGTGAAGGCTCGACCGCCTACCTCTCGCCGCGCAGCGTACAGGCGCTCCAA
GCTTGGCTGCATGCCGCCGACATCAGCGAGGGGCCGGTGTTCCGGCGCGTGATTGTGCGGCGCTACGCCGATCGGCCAGC
GCGCAGGCGAATCGATCCAAATACAATCTCAGGGCGCGCGATCTGGGATCCGCGCAAGTTCGCGGCGAAGGCAGCGGTTG
CGGCGCGGACTGAATACAATGTGGGCGAGAAGGCACTGCACCCCGGCTCGGTCACGCCAATCGTGCGTGGCATGATCGCT
AGCGCAATCGATGCGGGCGCGTTCGGCGATCTCGACAAAGAACAGGCGAGGAAATTGGTCGCAGGATTCAGTGCACATTC
GACGCGGGTCGGGTTGAACCAAGATCTGTTTGCGATCGGCGAAACGCTCGCCGGGATCATGGATGCGCTGCGGTGGAAGT
CGCCAAAGATGCCGCTAGCATACAACCGCAATCTTGCTGCCGAAGCTGGCGCAGCAGGTCGGCTACTATCGAAGCTAGAT
TAG

Upstream 100 bases:

>100_bases
CGTTGCTTTCCCTCTCTCGTACGGTCCGTGCATAGACATGTGATAAGGAGAACTTATCACATGTTGCGGAGTGTGCTGTT
TGAGTTAGTTTTATGCCGGC

Downstream 100 bases:

>100_bases
GTCGTTCGGCGAGCGGTGTTTCGCAGCTGACACCGGCAGCTTTGCGCCCTCATATTGGACATTTGATCGGTCTCGTCGCG
ATCCTGAAACCTGCCACTGG

Product: integrase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 399

Protein sequence:

>400_residues
MSDISPPSALPGSALAALETDLALALRAPNVAVDRELLAAYVEAAAPNSIRALRQDVEAFDLWCRRSDARAFPATPGMVA
DWLKHRASEGAAPASLVRYKASIAKAHRLLDLDDPTKHEICRLAIAAHRRNVGSRQKQARPLRFRGAVKDPVQATPRGIH
IRAILGACDNTPTGLRNRALLSVAYDTGLRASELVAVAAEDIVEALDPDARLLRIGRHKGDQEGEGSTAYLSPRSVQALQ
AWLHAADISEGPVFRRVIVRRYADRPARRRIDPNTISGRAIWDPRKFAAKAAVAARTEYNVGEKALHPGSVTPIVRGMIA
SAIDAGAFGDLDKEQARKLVAGFSAHSTRVGLNQDLFAIGETLAGIMDALRWKSPKMPLAYNRNLAAEAGAAGRLLSKLD

Sequences:

>Translated_400_residues
MSDISPPSALPGSALAALETDLALALRAPNVAVDRELLAAYVEAAAPNSIRALRQDVEAFDLWCRRSDARAFPATPGMVA
DWLKHRASEGAAPASLVRYKASIAKAHRLLDLDDPTKHEICRLAIAAHRRNVGSRQKQARPLRFRGAVKDPVQATPRGIH
IRAILGACDNTPTGLRNRALLSVAYDTGLRASELVAVAAEDIVEALDPDARLLRIGRHKGDQEGEGSTAYLSPRSVQALQ
AWLHAADISEGPVFRRVIVRRYADRPARRRIDPNTISGRAIWDPRKFAAKAAVAARTEYNVGEKALHPGSVTPIVRGMIA
SAIDAGAFGDLDKEQARKLVAGFSAHSTRVGLNQDLFAIGETLAGIMDALRWKSPKMPLAYNRNLAAEAGAAGRLLSKLD
>Mature_399_residues
SDISPPSALPGSALAALETDLALALRAPNVAVDRELLAAYVEAAAPNSIRALRQDVEAFDLWCRRSDARAFPATPGMVAD
WLKHRASEGAAPASLVRYKASIAKAHRLLDLDDPTKHEICRLAIAAHRRNVGSRQKQARPLRFRGAVKDPVQATPRGIHI
RAILGACDNTPTGLRNRALLSVAYDTGLRASELVAVAAEDIVEALDPDARLLRIGRHKGDQEGEGSTAYLSPRSVQALQA
WLHAADISEGPVFRRVIVRRYADRPARRRIDPNTISGRAIWDPRKFAAKAAVAARTEYNVGEKALHPGSVTPIVRGMIAS
AIDAGAFGDLDKEQARKLVAGFSAHSTRVGLNQDLFAIGETLAGIMDALRWKSPKMPLAYNRNLAAEAGAAGRLLSKLD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 43110; Mature: 42979

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDISPPSALPGSALAALETDLALALRAPNVAVDRELLAAYVEAAAPNSIRALRQDVEAF
CCCCCCCCCCCCHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
DLWCRRSDARAFPATPGMVADWLKHRASEGAAPASLVRYKASIAKAHRLLDLDDPTKHEI
HHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHH
CRLAIAAHRRNVGSRQKQARPLRFRGAVKDPVQATPRGIHIRAILGACDNTPTGLRNRAL
HHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHCCCCCEEEEEEEECCCCCCCCCCCCEE
LSVAYDTGLRASELVAVAAEDIVEALDPDARLLRIGRHKGDQEGEGSTAYLSPRSVQALQ
EEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCEEEECCHHHHHHH
AWLHAADISEGPVFRRVIVRRYADRPARRRIDPNTISGRAIWDPRKFAAKAAVAARTEYN
HHHHHHCCCCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCEEECHHHHHHHHHHHHHHCCC
VGEKALHPGSVTPIVRGMIASAIDAGAFGDLDKEQARKLVAGFSAHSTRVGLNQDLFAIG
CCHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHH
ETLAGIMDALRWKSPKMPLAYNRNLAAEAGAAGRLLSKLD
HHHHHHHHHHHCCCCCCCEEECCCCCHHCCHHHHHHHHCC
>Mature Secondary Structure 
SDISPPSALPGSALAALETDLALALRAPNVAVDRELLAAYVEAAAPNSIRALRQDVEAF
CCCCCCCCCCCHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
DLWCRRSDARAFPATPGMVADWLKHRASEGAAPASLVRYKASIAKAHRLLDLDDPTKHEI
HHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHH
CRLAIAAHRRNVGSRQKQARPLRFRGAVKDPVQATPRGIHIRAILGACDNTPTGLRNRAL
HHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHCCCCCEEEEEEEECCCCCCCCCCCCEE
LSVAYDTGLRASELVAVAAEDIVEALDPDARLLRIGRHKGDQEGEGSTAYLSPRSVQALQ
EEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCEEEECCHHHHHHH
AWLHAADISEGPVFRRVIVRRYADRPARRRIDPNTISGRAIWDPRKFAAKAAVAARTEYN
HHHHHHCCCCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCEEECHHHHHHHHHHHHHHCCC
VGEKALHPGSVTPIVRGMIASAIDAGAFGDLDKEQARKLVAGFSAHSTRVGLNQDLFAIG
CCHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHH
ETLAGIMDALRWKSPKMPLAYNRNLAAEAGAAGRLLSKLD
HHHHHHHHHHHCCCCCCCEEECCCCCHHCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11073919 [H]