Click here to switch to the map view.

The map label for this gene is oxaA [H]

Identifier: 85374954

GI number: 85374954

Start: 2154184

End: 2155929

Strand: Reverse

Name: oxaA [H]

Synonym: ELI_10635

Alternate gene names: 85374954

Gene position: 2155929-2154184 (Counterclockwise)

Preceding gene: 85374955

Following gene: 85374953

Centisome position: 70.63

GC content: 63.86

Gene sequence:

>1746_bases
TTGGACAACCAGCGCAACCTCCTCCTTGCCGTAGTGCTGTGCGGCGTGCTGATCATCGGCTGGGATGCGGCGATGAATTA
CTTCTATCCGCAGCCGGCCGAGCCGATCGAAGCGGTGGAAGGCAGCCCGACTGTAGCGAGCGCACCGGTTGCAGGTAGCT
CGACGGCGGCGACGCTCGACAACGGGGCGGCAGCACAAGGTCCGGTCGAACTGTCCGATGCTCTCGCCACGCCCGAGCGC
ATCCGCATCGACGCTCCGCGCGTCGAAGGCTCGATCAACCTCGTCGGCGCGCGGATCGACGATATCGAGCTGAAGGATCA
CCGCGCCACTGTCGACGAGGACAGCGGCCCGGTCCAGATGTTCGCGCCTCAGAATACCGATGCGCAGTACTTCGCCCAGT
TCGGCTGGGTCGGCGAGGGCGTTTCGCTGCCCACCAGCGACACCGTCTGGTCCGCCGATGGCGAGACTCTGACCCAGGGC
AATCCGGTCACGCTGAGCTGGGACAACGGCGCCGGGCAGCAGTTCCGCATCCGGTTCTCGATCGACGACAATTACATGAT
CACCGCCGAGCAGACCGCCGCCAATACCGGCGGCGGCCCGGTCGTGGCGCGGCCCTTCGCTACGATCACGCGCACCAGCG
AAACGGCCAGCACCGACACCTGGATCGCGCATTCCGGCCCGATGGGCGTGTTCGGCGATTCGGCGGATTACGGCCCGGAT
TACGACGACCTCGCCGACGACGGGCCCTATAGCGGCGAGGGCAAGGCGCGCTGGCTCGGCTTTTCCGACATCTATTTCCT
CGGCGCGCTGGTGCCGCAGGCCGATGCCGATCCGCAGACCGGCTTCCGCCCGATCGGCGAAAACCTGTTTCGCGCCGACG
TGATCTACCAGCCCGCGACCGTTGCGCCCGGCAACGAGGTGAGCCGCACGACGCAGCTTTTTGCGGGAGCGAAAGAAAGC
GAGATCCTCGACCAGTACGAAGATGCCGGGATCGACAAGTTCGGCCTCGCCATCGACTGGGGCTGGTTCCGCTGGTTCGA
AAAGCCGCTGCTGTGGCTGCTGAACCAGTTGTTCGACCTGGTCGGCAATTTCGGCGTCGCCATCATCCTGCTGACGGTAA
TCATCCGCGGCCTGCTGTTCCCGATCGCCCAGAAGCAATTCGGTAGCATGGCCGCGATGAAGGCCGTCCAGCCGAAGATG
AAGGCGATCCAGGAGAAGTACAAGGACGACAAGCAGAAGCAGCAGCAGGAGATCATGGCGCTCTACAAGGAGGAGAAGGT
CAATCCGCTGGCCGGCTGCCTGCCCTTGCTGATCCAGATCCCGATCTTCTTCGCGCTCTACAAGGTGCTGATCCTCGCCA
TCGAGATGCGCCACCAGCCTTTCGCACTGTGGATCGAGGATCTCTCCGCGCCCGATCCGGCGCATATCTTCAACCTGTTC
GGCCTGCTGCCGTTCGAAGTGCCCGGCCTGATCGCCATCGGCCCGCTTGCGGTGCTGCTGGGTGTGACGATGTGGCTGAC
CTTCCAGATGAATCCGGTGACCGATCCGATCCAGCGGCAGATCTTCAACATCATGCCATGGGTGCTGATGTTCATCATGG
CGCCGTTCGCCGCCGGCCTGCTGCTGTACTGGAACACGTCCAACGTGCTGACGCTGGCGCAGCAGCGCTATCTCTATTCC
AAGCACCCGCAATTGAAGGCGCAGGCCGATGCGGAGAGGGCTGCCAAGGCGAAGGCGGAAGGGTAG

Upstream 100 bases:

>100_bases
ACGTATAGGGCGCTGCCACCCTTGGGGCGGGCATGGCTTTGATCCCGTGCCGTAGTACCTATATAATACACCTCACGAGT
TCGATACGGGGCCTTTCACC

Downstream 100 bases:

>100_bases
GCGGCGCGTGATCGGCACACCCGAAACGCCCGAGGAGAAGGACGCGGCGAAGCTGTTTTCCGGCCGCGTCGACTTCCTTC
TGTCGGCGCCGCAGCTCAAA

Product: putative inner membrane protein translocase component YidC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 581; Mature: 581

Protein sequence:

>581_residues
MDNQRNLLLAVVLCGVLIIGWDAAMNYFYPQPAEPIEAVEGSPTVASAPVAGSSTAATLDNGAAAQGPVELSDALATPER
IRIDAPRVEGSINLVGARIDDIELKDHRATVDEDSGPVQMFAPQNTDAQYFAQFGWVGEGVSLPTSDTVWSADGETLTQG
NPVTLSWDNGAGQQFRIRFSIDDNYMITAEQTAANTGGGPVVARPFATITRTSETASTDTWIAHSGPMGVFGDSADYGPD
YDDLADDGPYSGEGKARWLGFSDIYFLGALVPQADADPQTGFRPIGENLFRADVIYQPATVAPGNEVSRTTQLFAGAKES
EILDQYEDAGIDKFGLAIDWGWFRWFEKPLLWLLNQLFDLVGNFGVAIILLTVIIRGLLFPIAQKQFGSMAAMKAVQPKM
KAIQEKYKDDKQKQQQEIMALYKEEKVNPLAGCLPLLIQIPIFFALYKVLILAIEMRHQPFALWIEDLSAPDPAHIFNLF
GLLPFEVPGLIAIGPLAVLLGVTMWLTFQMNPVTDPIQRQIFNIMPWVLMFIMAPFAAGLLLYWNTSNVLTLAQQRYLYS
KHPQLKAQADAERAAKAKAEG

Sequences:

>Translated_581_residues
MDNQRNLLLAVVLCGVLIIGWDAAMNYFYPQPAEPIEAVEGSPTVASAPVAGSSTAATLDNGAAAQGPVELSDALATPER
IRIDAPRVEGSINLVGARIDDIELKDHRATVDEDSGPVQMFAPQNTDAQYFAQFGWVGEGVSLPTSDTVWSADGETLTQG
NPVTLSWDNGAGQQFRIRFSIDDNYMITAEQTAANTGGGPVVARPFATITRTSETASTDTWIAHSGPMGVFGDSADYGPD
YDDLADDGPYSGEGKARWLGFSDIYFLGALVPQADADPQTGFRPIGENLFRADVIYQPATVAPGNEVSRTTQLFAGAKES
EILDQYEDAGIDKFGLAIDWGWFRWFEKPLLWLLNQLFDLVGNFGVAIILLTVIIRGLLFPIAQKQFGSMAAMKAVQPKM
KAIQEKYKDDKQKQQQEIMALYKEEKVNPLAGCLPLLIQIPIFFALYKVLILAIEMRHQPFALWIEDLSAPDPAHIFNLF
GLLPFEVPGLIAIGPLAVLLGVTMWLTFQMNPVTDPIQRQIFNIMPWVLMFIMAPFAAGLLLYWNTSNVLTLAQQRYLYS
KHPQLKAQADAERAAKAKAEG
>Mature_581_residues
MDNQRNLLLAVVLCGVLIIGWDAAMNYFYPQPAEPIEAVEGSPTVASAPVAGSSTAATLDNGAAAQGPVELSDALATPER
IRIDAPRVEGSINLVGARIDDIELKDHRATVDEDSGPVQMFAPQNTDAQYFAQFGWVGEGVSLPTSDTVWSADGETLTQG
NPVTLSWDNGAGQQFRIRFSIDDNYMITAEQTAANTGGGPVVARPFATITRTSETASTDTWIAHSGPMGVFGDSADYGPD
YDDLADDGPYSGEGKARWLGFSDIYFLGALVPQADADPQTGFRPIGENLFRADVIYQPATVAPGNEVSRTTQLFAGAKES
EILDQYEDAGIDKFGLAIDWGWFRWFEKPLLWLLNQLFDLVGNFGVAIILLTVIIRGLLFPIAQKQFGSMAAMKAVQPKM
KAIQEKYKDDKQKQQQEIMALYKEEKVNPLAGCLPLLIQIPIFFALYKVLILAIEMRHQPFALWIEDLSAPDPAHIFNLF
GLLPFEVPGLIAIGPLAVLLGVTMWLTFQMNPVTDPIQRQIFNIMPWVLMFIMAPFAAGLLLYWNTSNVLTLAQQRYLYS
KHPQLKAQADAERAAKAKAEG

Specific function: Required for the insertion of integral membrane proteins into the membrane. Probably plays an essential role in the integration of proteins of the respiratory chain complexes. Involved in integration of membrane proteins that insert dependently and indepe

COG id: COG0706

COG function: function code U; Preprotein translocase subunit YidC

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OXA1/oxaA family. Type 1 subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790140, Length=418, Percent_Identity=33.7320574162679, Blast_Score=234, Evalue=2e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019998
- InterPro:   IPR001708 [H]

Pfam domain/function: PF02096 60KD_IMP [H]

EC number: NA

Molecular weight: Translated: 63614; Mature: 63614

Theoretical pI: Translated: 4.30; Mature: 4.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNQRNLLLAVVLCGVLIIGWDAAMNYFYPQPAEPIEAVEGSPTVASAPVAGSSTAATLD
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCEECCCCCCCCCCEECC
NGAAAQGPVELSDALATPERIRIDAPRVEGSINLVGARIDDIELKDHRATVDEDSGPVQM
CCCCCCCCCHHHHHHCCCCCEEEECCCCCCCEEEEEEEECCEEECCCCCCCCCCCCCEEE
FAPQNTDAQYFAQFGWVGEGVSLPTSDTVWSADGETLTQGNPVTLSWDNGAGQQFRIRFS
ECCCCCCHHHHHHHCCCCCCCCCCCCCCEECCCCCEECCCCCEEEEECCCCCCEEEEEEE
IDDNYMITAEQTAANTGGGPVVARPFATITRTSETASTDTWIAHSGPMGVFGDSADYGPD
ECCCEEEEEHHHCCCCCCCCEEECCCHHEEECCCCCCCCCEEEECCCCCCCCCCCCCCCC
YDDLADDGPYSGEGKARWLGFSDIYFLGALVPQADADPQTGFRPIGENLFRADVIYQPAT
HHHHCCCCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHEECCCC
VAPGNEVSRTTQLFAGAKESEILDQYEDAGIDKFGLAIDWGWFRWFEKPLLWLLNQLFDL
CCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHH
VGNFGVAIILLTVIIRGLLFPIAQKQFGSMAAMKAVQPKMKAIQEKYKDDKQKQQQEIMA
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LYKEEKVNPLAGCLPLLIQIPIFFALYKVLILAIEMRHQPFALWIEDLSAPDPAHIFNLF
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHCCCCCHHHHHHHH
GLLPFEVPGLIAIGPLAVLLGVTMWLTFQMNPVTDPIQRQIFNIMPWVLMFIMAPFAAGL
HCCCCCCCCHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCE
LLYWNTSNVLTLAQQRYLYSKHPQLKAQADAERAAKAKAEG
EEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCC
>Mature Secondary Structure
MDNQRNLLLAVVLCGVLIIGWDAAMNYFYPQPAEPIEAVEGSPTVASAPVAGSSTAATLD
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCEECCCCCCCCCCEECC
NGAAAQGPVELSDALATPERIRIDAPRVEGSINLVGARIDDIELKDHRATVDEDSGPVQM
CCCCCCCCCHHHHHHCCCCCEEEECCCCCCCEEEEEEEECCEEECCCCCCCCCCCCCEEE
FAPQNTDAQYFAQFGWVGEGVSLPTSDTVWSADGETLTQGNPVTLSWDNGAGQQFRIRFS
ECCCCCCHHHHHHHCCCCCCCCCCCCCCEECCCCCEECCCCCEEEEECCCCCCEEEEEEE
IDDNYMITAEQTAANTGGGPVVARPFATITRTSETASTDTWIAHSGPMGVFGDSADYGPD
ECCCEEEEEHHHCCCCCCCCEEECCCHHEEECCCCCCCCCEEEECCCCCCCCCCCCCCCC
YDDLADDGPYSGEGKARWLGFSDIYFLGALVPQADADPQTGFRPIGENLFRADVIYQPAT
HHHHCCCCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHEECCCC
VAPGNEVSRTTQLFAGAKESEILDQYEDAGIDKFGLAIDWGWFRWFEKPLLWLLNQLFDL
CCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHH
VGNFGVAIILLTVIIRGLLFPIAQKQFGSMAAMKAVQPKMKAIQEKYKDDKQKQQQEIMA
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LYKEEKVNPLAGCLPLLIQIPIFFALYKVLILAIEMRHQPFALWIEDLSAPDPAHIFNLF
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHCCCCCHHHHHHHH
GLLPFEVPGLIAIGPLAVLLGVTMWLTFQMNPVTDPIQRQIFNIMPWVLMFIMAPFAAGL
HCCCCCCCCHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCE
LLYWNTSNVLTLAQQRYLYSKHPQLKAQADAERAAKAKAEG
EEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA