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The map label for this gene is ycbB [H]

Identifier: 85374905

GI number: 85374905

Start: 2108073

End: 2109494

Strand: Reverse

Name: ycbB [H]

Synonym: ELI_10390

Alternate gene names: 85374905

Gene position: 2109494-2108073 (Counterclockwise)

Preceding gene: 85374909

Following gene: 85374899

Centisome position: 69.11

GC content: 64.28

Gene sequence:

>1422_bases
ATGCATGCGACTGCTTTGAAATCTCTCCTTTTGCTCGGCGCGGGCCTGGCCCTGCCGACGAGCCTCGGCGCACAGCAGGC
CGAGCCCGAGAACCTTCTGCCGAGCACTCCGGCACAAGAACAGCCGGCGGAAGTCGGATCGCAGCCGCAGCAAGCGGGCG
ATCCCGAATACGATGCGCCTACGCAGGGATCTGTCGAAGAGGCCTTCGACGGCGAATTCCAGACGATCCAGCAGATCGAT
CCCGAGATGCAGAGCTGGACGGCGGCGCAGGCCGAGCAGCTGGCCGCATTGATCGAAGGGATCGGGGCCCACGGCCTCGA
CCCGCAGGATTACGACCTGCCCGGACTTCGCGCCGCGCTCGCGCAGGGTGAAGGCATCGCGCTGAGCGCGGAAGCCAGCA
AGCGCTTCGTGTGGCTTGTCGAGGACATGCGCGATGGCCGCACGCCGATGGACGGCCGCAAGCAATGGTTCGTGATGGAC
CCGGATGCCGATCGGTATCGTTCCGGTACGGTGATGAAAGCGGCGCTCGAAAGCGGTGACCTCACCGCAGCGCTCGAAAG
CGTAGCGCCGCTGCATCCCGACTATGCCGCGCTCAAGCAGGCTCTAGCCAAGGCCGAGAAGGGGTCCGAACGTTTCAAAC
TGATCCGGGCCAATATGGATCGATGGCGCTGGCTCCCGCGCGATCTTGGCGGGCAGTACCTGATGACCAATGTGCCGGAA
TATCAGCTGCGTCTGACCGTCAACGACAAGATCGTGCGCACCTACAAGACGATCGTCGGCAAGCCGGGGCGCACGGCGAC
CCCGCAGCTTGCCGAAGTGGTGGAGGGCGTGATCCTCAATCCGACCTGGACGGTACCGCAAAGCATCGTGAAGGGTGAAG
GGCTGGGCGCGAAAGTGCTCAACAATCCCGGCTGGGCGCGGGCCAAGGGCTACAAGGCGACCAAGGGTGCCAATGGCTGG
GTCACCGTGGTCCAGCAGCCCGGGCCGACCAATTCGCTCGGCCGGATGAAGCTCGACATGCCGAACAGGCACGCGATCTT
CCTGCACGACACGCCGAGCCGCAATTTGTTCGGCACCAGCAACCGGGCGCTCAGCCACGGCTGCATCCGCACCGAGCGGG
CGACCGAACTGGCGCTGACGCTCTCGATCCTTCAGGCGGGCCTGACGGCGGACGAGGGCGTGGAACTGCTCAACAGCGGT
GAATATACGCGGGTCGGGTTCGAGAAGAAGATGCCGGTCTATATCACCTATTTCACCATGGCGACGGACATCGACGGCAA
GCTCTCGACGTTCAAGGACCTTTACGGACGCGACGATGCGGTGAAGGCGGCGTTCGATGCGCCGCGCGTTGCCAATCGCA
GCCGCGTGACCGACGAACAGGTGATCGTGATCGAAGACGACCCGCGCGTTTCCGCGCCTTAG

Upstream 100 bases:

>100_bases
TGCGGAAAGCGTGTGTGCTTGATGCAGCATCGGTATTGCGGCAAAATCGCCGCTGGCCGCACCGGATATGGATGTGCGGC
GACTTGGGTGGACTTGGACT

Downstream 100 bases:

>100_bases
TACGCGCTAGTAGACGCCGGGATTGAGGCGATCCTCGCCGGTCGCGCGCTCCGGCGTGAGCAGTTCCAGATCCTTTGGCG
GTTCGGGCTTCGTCACCGTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 473; Mature: 473

Protein sequence:

>473_residues
MHATALKSLLLLGAGLALPTSLGAQQAEPENLLPSTPAQEQPAEVGSQPQQAGDPEYDAPTQGSVEEAFDGEFQTIQQID
PEMQSWTAAQAEQLAALIEGIGAHGLDPQDYDLPGLRAALAQGEGIALSAEASKRFVWLVEDMRDGRTPMDGRKQWFVMD
PDADRYRSGTVMKAALESGDLTAALESVAPLHPDYAALKQALAKAEKGSERFKLIRANMDRWRWLPRDLGGQYLMTNVPE
YQLRLTVNDKIVRTYKTIVGKPGRTATPQLAEVVEGVILNPTWTVPQSIVKGEGLGAKVLNNPGWARAKGYKATKGANGW
VTVVQQPGPTNSLGRMKLDMPNRHAIFLHDTPSRNLFGTSNRALSHGCIRTERATELALTLSILQAGLTADEGVELLNSG
EYTRVGFEKKMPVYITYFTMATDIDGKLSTFKDLYGRDDAVKAAFDAPRVANRSRVTDEQVIVIEDDPRVSAP

Sequences:

>Translated_473_residues
MHATALKSLLLLGAGLALPTSLGAQQAEPENLLPSTPAQEQPAEVGSQPQQAGDPEYDAPTQGSVEEAFDGEFQTIQQID
PEMQSWTAAQAEQLAALIEGIGAHGLDPQDYDLPGLRAALAQGEGIALSAEASKRFVWLVEDMRDGRTPMDGRKQWFVMD
PDADRYRSGTVMKAALESGDLTAALESVAPLHPDYAALKQALAKAEKGSERFKLIRANMDRWRWLPRDLGGQYLMTNVPE
YQLRLTVNDKIVRTYKTIVGKPGRTATPQLAEVVEGVILNPTWTVPQSIVKGEGLGAKVLNNPGWARAKGYKATKGANGW
VTVVQQPGPTNSLGRMKLDMPNRHAIFLHDTPSRNLFGTSNRALSHGCIRTERATELALTLSILQAGLTADEGVELLNSG
EYTRVGFEKKMPVYITYFTMATDIDGKLSTFKDLYGRDDAVKAAFDAPRVANRSRVTDEQVIVIEDDPRVSAP
>Mature_473_residues
MHATALKSLLLLGAGLALPTSLGAQQAEPENLLPSTPAQEQPAEVGSQPQQAGDPEYDAPTQGSVEEAFDGEFQTIQQID
PEMQSWTAAQAEQLAALIEGIGAHGLDPQDYDLPGLRAALAQGEGIALSAEASKRFVWLVEDMRDGRTPMDGRKQWFVMD
PDADRYRSGTVMKAALESGDLTAALESVAPLHPDYAALKQALAKAEKGSERFKLIRANMDRWRWLPRDLGGQYLMTNVPE
YQLRLTVNDKIVRTYKTIVGKPGRTATPQLAEVVEGVILNPTWTVPQSIVKGEGLGAKVLNNPGWARAKGYKATKGANGW
VTVVQQPGPTNSLGRMKLDMPNRHAIFLHDTPSRNLFGTSNRALSHGCIRTERATELALTLSILQAGLTADEGVELLNSG
EYTRVGFEKKMPVYITYFTMATDIDGKLSTFKDLYGRDDAVKAAFDAPRVANRSRVTDEQVIVIEDDPRVSAP

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=249, Percent_Identity=34.5381526104418, Blast_Score=147, Evalue=1e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 51520; Mature: 51520

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHATALKSLLLLGAGLALPTSLGAQQAEPENLLPSTPAQEQPAEVGSQPQQAGDPEYDAP
CCHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCC
TQGSVEEAFDGEFQTIQQIDPEMQSWTAAQAEQLAALIEGIGAHGLDPQDYDLPGLRAAL
CCCCHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
AQGEGIALSAEASKRFVWLVEDMRDGRTPMDGRKQWFVMDPDADRYRSGTVMKAALESGD
HCCCCEEEECCCCCCEEEEEEHHHCCCCCCCCCCEEEEECCCHHHHCCCCHHEEHHCCCC
LTAALESVAPLHPDYAALKQALAKAEKGSERFKLIRANMDRWRWLPRDLGGQYLMTNVPE
HHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCHHHHCCCHHHCCCCEEEECCCC
YQLRLTVNDKIVRTYKTIVGKPGRTATPQLAEVVEGVILNPTWTVPQSIVKGEGLGAKVL
EEEEEEECHHHHHHHHHHHCCCCCCCCHHHHHHHCCEECCCCCCCHHHHHCCCCCCCCEE
NNPGWARAKGYKATKGANGWVTVVQQPGPTNSLGRMKLDMPNRHAIFLHDTPSRNLFGTS
CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCC
NRALSHGCIRTERATELALTLSILQAGLTADEGVELLNSGEYTRVGFEKKMPVYITYFTM
CCHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEECCCCCCCEEEEEEEE
ATDIDGKLSTFKDLYGRDDAVKAAFDAPRVANRSRVTDEQVIVIEDDPRVSAP
EECCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCC
>Mature Secondary Structure
MHATALKSLLLLGAGLALPTSLGAQQAEPENLLPSTPAQEQPAEVGSQPQQAGDPEYDAP
CCHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCC
TQGSVEEAFDGEFQTIQQIDPEMQSWTAAQAEQLAALIEGIGAHGLDPQDYDLPGLRAAL
CCCCHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
AQGEGIALSAEASKRFVWLVEDMRDGRTPMDGRKQWFVMDPDADRYRSGTVMKAALESGD
HCCCCEEEECCCCCCEEEEEEHHHCCCCCCCCCCEEEEECCCHHHHCCCCHHEEHHCCCC
LTAALESVAPLHPDYAALKQALAKAEKGSERFKLIRANMDRWRWLPRDLGGQYLMTNVPE
HHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCHHHHCCCHHHCCCCEEEECCCC
YQLRLTVNDKIVRTYKTIVGKPGRTATPQLAEVVEGVILNPTWTVPQSIVKGEGLGAKVL
EEEEEEECHHHHHHHHHHHCCCCCCCCHHHHHHHCCEECCCCCCCHHHHHCCCCCCCCEE
NNPGWARAKGYKATKGANGWVTVVQQPGPTNSLGRMKLDMPNRHAIFLHDTPSRNLFGTS
CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCC
NRALSHGCIRTERATELALTLSILQAGLTADEGVELLNSGEYTRVGFEKKMPVYITYFTM
CCHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEECCCCCCCEEEEEEEE
ATDIDGKLSTFKDLYGRDDAVKAAFDAPRVANRSRVTDEQVIVIEDDPRVSAP
EECCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]