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The map label for this gene is yraR [H]

Identifier: 85373304

GI number: 85373304

Start: 516675

End: 517373

Strand: Direct

Name: yraR [H]

Synonym: ELI_02385

Alternate gene names: 85373304

Gene position: 516675-517373 (Clockwise)

Preceding gene: 85373303

Following gene: 85373305

Centisome position: 16.93

GC content: 66.09

Gene sequence:

>699_bases
ATGTCCACACGCACCCGCATCGCCCTGGTCGGCGCGACCGGTCTGATCGGCCAGGAAATCCTGCAGCTTTCGGTCGGGCG
CGAAGACTTGCGCATCGTCGGCGTTGCGCGGCGCGAGGTGCCGTTGCCGGAAGGCGCGCGCATGGAAGTGTTCGTGGCCG
AACCGGCCAAGTGGGGCGAGGTTTTCGAAGCCGTCCGCCCCGATGCAGTGATCTGCGCGCTGGGGACCACGATCCGCAAG
GTCGGCGGCGACAAACAGGCTTTTCGCGCGGTCGACCATGATCTCGTGCTCGACACCGCGCGCGCTGCGGTCGACGCGGG
AGTGGAGCGGTTTCTTTCCGTATCGTCAGTCGGCGCGGACCGGCATTCGAAGAACTTCTACCTGTCGGTCAAGGGCGAAA
CAGAAGCGGATCTGACCAAGGTCGGCTTCAAGCGGCTCGATATCCTGCGGCCGGGCCTGCTTCGCGGTGCGCGCAACGGT
GACATGCGTCCTGCCGAAAAGCTGGGCATGCTCGCCAGTCCGCTGGTCGACCTGTTCCTGCACGGCAATGCCCGCCGCTA
TCGTTCGGTCAGAGCGAGCCAGGTGGCGGAGGCCGCATTGGCGCTGGCGATGCGCAAGACGCAGGGTCGCTTCGTCCATG
ATTACGACGCGATCCAGCGCGCGGCCAGAATGCTGCCCGCGCCGCTGGTGGAGGATTAG

Upstream 100 bases:

>100_bases
CTCCGGCCAGCGCATATTCGGCACAAAGCTGCCCTGCGCCCATGGATTCGGTTGTCCAAGCCCCCTAACAGCGTGGCACG
CAGAGGGTAGAACACGTCGC

Downstream 100 bases:

>100_bases
AGGGGAACAGGCGCGATGTGGGACACGATTTTCAGCATCAACACGGCGATCGCCATGATCGGCTGGGCGATCCTGCTGTT
CGCGCCGCGCCGCGAATTGC

Product: nucleoside-diphosphate-sugar epimerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MSTRTRIALVGATGLIGQEILQLSVGREDLRIVGVARREVPLPEGARMEVFVAEPAKWGEVFEAVRPDAVICALGTTIRK
VGGDKQAFRAVDHDLVLDTARAAVDAGVERFLSVSSVGADRHSKNFYLSVKGETEADLTKVGFKRLDILRPGLLRGARNG
DMRPAEKLGMLASPLVDLFLHGNARRYRSVRASQVAEAALALAMRKTQGRFVHDYDAIQRAARMLPAPLVED

Sequences:

>Translated_232_residues
MSTRTRIALVGATGLIGQEILQLSVGREDLRIVGVARREVPLPEGARMEVFVAEPAKWGEVFEAVRPDAVICALGTTIRK
VGGDKQAFRAVDHDLVLDTARAAVDAGVERFLSVSSVGADRHSKNFYLSVKGETEADLTKVGFKRLDILRPGLLRGARNG
DMRPAEKLGMLASPLVDLFLHGNARRYRSVRASQVAEAALALAMRKTQGRFVHDYDAIQRAARMLPAPLVED
>Mature_231_residues
STRTRIALVGATGLIGQEILQLSVGREDLRIVGVARREVPLPEGARMEVFVAEPAKWGEVFEAVRPDAVICALGTTIRKV
GGDKQAFRAVDHDLVLDTARAAVDAGVERFLSVSSVGADRHSKNFYLSVKGETEADLTKVGFKRLDILRPGLLRGARNGD
MRPAEKLGMLASPLVDLFLHGNARRYRSVRASQVAEAALALAMRKTQGRFVHDYDAIQRAARMLPAPLVED

Specific function: Unknown

COG id: COG0702

COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To yeast YER004W [H]

Homologues:

Organism=Homo sapiens, GI148728172, Length=169, Percent_Identity=34.3195266272189, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI148728168, Length=169, Percent_Identity=34.3195266272189, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI148728164, Length=169, Percent_Identity=34.3195266272189, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI148728166, Length=169, Percent_Identity=34.3195266272189, Blast_Score=72, Evalue=4e-13,
Organism=Escherichia coli, GI87082218, Length=203, Percent_Identity=34.9753694581281, Blast_Score=91, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI71983631, Length=221, Percent_Identity=32.579185520362, Blast_Score=99, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6320840, Length=159, Percent_Identity=35.8490566037736, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000534 [H]

Pfam domain/function: PF01118 Semialdhyde_dh [H]

EC number: NA

Molecular weight: Translated: 25283; Mature: 25151

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTRTRIALVGATGLIGQEILQLSVGREDLRIVGVARREVPLPEGARMEVFVAEPAKWGE
CCCCCEEEEEECCHHHHHHHHHHHCCCCCEEEEEEHHHCCCCCCCCEEEEEEECCCHHHH
VFEAVRPDAVICALGTTIRKVGGDKQAFRAVDHDLVLDTARAAVDAGVERFLSVSSVGAD
HHHHHCCCEEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RHSKNFYLSVKGETEADLTKVGFKRLDILRPGLLRGARNGDMRPAEKLGMLASPLVDLFL
CCCCEEEEEECCCCHHHHHHHHHHHHHHHCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
HGNARRYRSVRASQVAEAALALAMRKTQGRFVHDYDAIQRAARMLPAPLVED
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
STRTRIALVGATGLIGQEILQLSVGREDLRIVGVARREVPLPEGARMEVFVAEPAKWGE
CCCCEEEEEECCHHHHHHHHHHHCCCCCEEEEEEHHHCCCCCCCCEEEEEEECCCHHHH
VFEAVRPDAVICALGTTIRKVGGDKQAFRAVDHDLVLDTARAAVDAGVERFLSVSSVGAD
HHHHHCCCEEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RHSKNFYLSVKGETEADLTKVGFKRLDILRPGLLRGARNGDMRPAEKLGMLASPLVDLFL
CCCCEEEEEECCCCHHHHHHHHHHHHHHHCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
HGNARRYRSVRASQVAEAALALAMRKTQGRFVHDYDAIQRAARMLPAPLVED
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]