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The map label for this gene is dsdC [C]

Identifier: 85373015

GI number: 85373015

Start: 221918

End: 222772

Strand: Direct

Name: dsdC [C]

Synonym: ELI_00940

Alternate gene names: 85373015

Gene position: 221918-222772 (Clockwise)

Preceding gene: 85373014

Following gene: 85373018

Centisome position: 7.27

GC content: 63.98

Gene sequence:

>855_bases
GTGGCGGAAGCGGGCGGGGTGCGCGCAGGGGCGGCGACGCTGTCGCTCAGCCCGTCAGCGACCAGTCGAAGGATCGCCGC
GCTGGAGGCCTTTCTCGATATCGATCTGTTCAATCGCTCGAACGGCGGACTGCAACTCACCGCGGCTGGAATGACCTATC
GCAATGCGGCCGAGGCAGCGATCGAAGCGCTCGGTCGCGTCCAAACCATGGGTACCCCCAAGCGCGACGCGACTCTTACC
GTAGCGGCATCGCACAGTCTCGCCCTGCGGTGGCTGATTCCCCGAAGCGGCGATTTCGCTCTTACAACCGGTGTACGTCT
CGACGTTCGACCGACCCGCGATCCGAACATCCTGCGTTCCGGGGAAGCACAGTTGGCGATCTGGGCCTCGTTCCAGGATC
CGGATCTCCTTTCGGAAAACGTCTTGGAAGTTCTGGGGTGCCCCGTCTCCGCTCCATCGCTCATTGAAGAACAAGGCGGT
GAACTGGGCGAAGCCGACATCGCTCGCCTTCCTCTACTCGCGCCGCGCTTGCCGGAGAATCTCTGGCCGCGCTGGCTCGC
CTTGGCCGGTCTTGATCACGAAGAGATCGACGTTCGACTGTTCGATACGAATGTGCTCGCATACGAGGCCGCGGCTGCAG
GACTCGGCGTCGCTCTCGCGATCCCTTTCATGTGCGAGGAGCACCTGGCCCGCGGTTCGCTGGTCCCGTGCGGCCAGTCG
CGACTGATCGGGGAGCATTACAGACTCTATCGGCGCCGCAGCCGTGCGGGTCCGTCCGCACCGGAAACGCATTTCATCCA
TTGGGCGCGCAGGGAGGCAAGGAAGGCGGGCGATCGCTTCGCGGCAATTGGTTGA

Upstream 100 bases:

>100_bases
GCGGAACGGATCCTGTCATCTAGACTAAACGGATGACGGCTATCGCCGTCTTGTGTCCAGAAAGGTACGCCCCCTCGAAG
CGATCGAGGCGTTCTTAGCG

Downstream 100 bases:

>100_bases
TCAACCTTCTAGCCGATCCGCACCAAGGTGGCGCTGGCGGTGACGATAAGCCTTTCCTCGGCACCATTGCTCGCATGGAA
ATCGGCAGTCACCACCACCT

Product: transcriptional regulator, lysR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 283

Protein sequence:

>284_residues
MAEAGGVRAGAATLSLSPSATSRRIAALEAFLDIDLFNRSNGGLQLTAAGMTYRNAAEAAIEALGRVQTMGTPKRDATLT
VAASHSLALRWLIPRSGDFALTTGVRLDVRPTRDPNILRSGEAQLAIWASFQDPDLLSENVLEVLGCPVSAPSLIEEQGG
ELGEADIARLPLLAPRLPENLWPRWLALAGLDHEEIDVRLFDTNVLAYEAAAAGLGVALAIPFMCEEHLARGSLVPCGQS
RLIGEHYRLYRRRSRAGPSAPETHFIHWARREARKAGDRFAAIG

Sequences:

>Translated_284_residues
MAEAGGVRAGAATLSLSPSATSRRIAALEAFLDIDLFNRSNGGLQLTAAGMTYRNAAEAAIEALGRVQTMGTPKRDATLT
VAASHSLALRWLIPRSGDFALTTGVRLDVRPTRDPNILRSGEAQLAIWASFQDPDLLSENVLEVLGCPVSAPSLIEEQGG
ELGEADIARLPLLAPRLPENLWPRWLALAGLDHEEIDVRLFDTNVLAYEAAAAGLGVALAIPFMCEEHLARGSLVPCGQS
RLIGEHYRLYRRRSRAGPSAPETHFIHWARREARKAGDRFAAIG
>Mature_283_residues
AEAGGVRAGAATLSLSPSATSRRIAALEAFLDIDLFNRSNGGLQLTAAGMTYRNAAEAAIEALGRVQTMGTPKRDATLTV
AASHSLALRWLIPRSGDFALTTGVRLDVRPTRDPNILRSGEAQLAIWASFQDPDLLSENVLEVLGCPVSAPSLIEEQGGE
LGEADIARLPLLAPRLPENLWPRWLALAGLDHEEIDVRLFDTNVLAYEAAAAGLGVALAIPFMCEEHLARGSLVPCGQSR
LIGEHYRLYRRRSRAGPSAPETHFIHWARREARKAGDRFAAIG

Specific function: Regulates The Expression Of The Dsd Operon For D-Serine Deaminase (Dsda). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788706, Length=281, Percent_Identity=27.7580071174377, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789173, Length=235, Percent_Identity=27.2340425531915, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1786448, Length=237, Percent_Identity=26.1603375527426, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 30589; Mature: 30458

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEAGGVRAGAATLSLSPSATSRRIAALEAFLDIDLFNRSNGGLQLTAAGMTYRNAAEAA
CCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHEEEEECCCCCEEEEECCCCHHHHHHHH
IEALGRVQTMGTPKRDATLTVAASHSLALRWLIPRSGDFALTTGVRLDVRPTRDPNILRS
HHHHHHHHHCCCCCCCCEEEEEECCCEEEEEEECCCCCEEEECCEEEEECCCCCCCCEEC
GEAQLAIWASFQDPDLLSENVLEVLGCPVSAPSLIEEQGGELGEADIARLPLLAPRLPEN
CCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCHHHHCCCCCCCCCHH
LWPRWLALAGLDHEEIDVRLFDTNVLAYEAAAAGLGVALAIPFMCEEHLARGSLVPCGQS
HCHHHHHHHCCCHHHEEEEEEECCEEEEHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCH
RLIGEHYRLYRRRSRAGPSAPETHFIHWARREARKAGDRFAAIG
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEECCC
>Mature Secondary Structure 
AEAGGVRAGAATLSLSPSATSRRIAALEAFLDIDLFNRSNGGLQLTAAGMTYRNAAEAA
CCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHEEEEECCCCCEEEEECCCCHHHHHHHH
IEALGRVQTMGTPKRDATLTVAASHSLALRWLIPRSGDFALTTGVRLDVRPTRDPNILRS
HHHHHHHHHCCCCCCCCEEEEEECCCEEEEEEECCCCCEEEECCEEEEECCCCCCCCEEC
GEAQLAIWASFQDPDLLSENVLEVLGCPVSAPSLIEEQGGELGEADIARLPLLAPRLPEN
CCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCHHHHCCCCCCCCCHH
LWPRWLALAGLDHEEIDVRLFDTNVLAYEAAAAGLGVALAIPFMCEEHLARGSLVPCGQS
HCHHHHHHHCCCHHHEEEEEEECCEEEEHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCH
RLIGEHYRLYRRRSRAGPSAPETHFIHWARREARKAGDRFAAIG
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]