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The map label for this gene is yclF [H]

Identifier: 84625506

GI number: 84625506

Start: 4352867

End: 4354375

Strand: Reverse

Name: yclF [H]

Synonym: XOO_3849

Alternate gene names: 84625506

Gene position: 4354375-4352867 (Counterclockwise)

Preceding gene: 84625507

Following gene: 84625505

Centisome position: 88.14

GC content: 58.91

Gene sequence:

>1509_bases
ATGAGCGTTGACGCGACCGCGCCGATATCCGCTTCCACTCCGCCGCCGCCCGAATTCCCCACGTTGCTTGGCCACCCCCG
GCCGCTGTGGATGCTGTTCATGACCGAGTTCTGGGAACGCTTTGCGTTCTACGGCATTCGCTGGGCGCTGACGCTCTATA
TCGTGACCGAGTTCTACCAGGGCTCTGGTGTCGGCGAGGCGCCGGCCAACCGGCTCTACGGCGCCTATCTGGCGCTGGTC
TACGCCTCGGCATTGTTTGGGGGCTTCGTCGCAGATCGATTGATCGGCTACCAACGCTCGCTGTTGATCGGTGCAGTGGT
CATGTCGGCTGGCCTGTTCCTGATCGTGGTACCGAACGACCAAGTGTTCAAGATCGGTCTGGCGACGATCATCGCAGGTA
ACGGCTTGTTCAAGCCGAATGTCTCGACGATGGTCGGTCAGCTGTATCCGCTGAATGACCCGCGCCGGGATTCAGGATTC
ACGATTTTCTACATGGGCATCAATGCGGGCGGCTTCGTTGCGCCTATCCTGACCGGCCTGCTTGCCGACAAGTTGTTCGG
CACTGAAGCGATGCCGGCTTACAAGTACGTGTTCATCGCATCCGGCATCGGCATGTTGATCAGTCTGGTCTGGTTCTGGC
TGGGGCGTCGTCAACTCGGACCGGTCGGTTTGCCGCCGGTTGGTGGAGAAGGCATGGGCCGAACGCTGGTGGTCTTGGTG
GGCACGGTTGTGGCCGTTCCGGTCGCCTATGGGCTGCTGCTGATCGGCGCCAGCATCCTTGGTTGGATCCTGACCATTTT
GTTCCTTGCCCTGTGTGGACTGATCCTGTTCGAAGGCATTCGTGAAGGCAAGGTACAACGCGATCGCGCGGTCGCCATGC
TGATCGTCTTTGTATTCAACGTCATGTTTTTCATGTTCTTCGAGCAGGCGGGCAGTTCGTTCAATTTCCTCGCCCAGAAC
ATCGTGGAGCGCGACCTGGGCGGCTGGATGTTCCCGGTGGGCTGGTTTCAATCGGTCAATACGCTGGCAATTCTGGTGCT
TGGCCCGGTCTTCGTATGGCTCTGGGTCGCGCTGAAATCGGCCAATCCGTCGATCCCGAGAAAGTTTGGCTTAGGACTGA
TCTTCAACGGTCTGGCCTTTGCCCTGCTGATGTACGCCTTGTCGGCCCTGGTCGACGATGCTGGCAAGATTCCCTTCTGG
ACGTTGTTCATGGTCTATGTCATCCAGACCGTCGGCGAGCTGTGCCTGTCTCCCATCGGCTTGTCGATGACGACCAAGCT
GGCGCCTGCCAAAGTGGTCGGCCTGGCCATGGGGGGCTGGTTCCTGTCGACCGCGATCGGCAATAACCTGTCGGGCATTT
TCGCTTCTGCGATCAGTGGCGAGACTGGCATGACCGTGGCGTCTGCATTGAAGGGCTACACTTTTGGTTTCTGGTCGTTG
ATCGCTGCGGGTGTGTTGCTGCTGCTGATTGCCCCGTTGGTCAACAAACTGATGCACGGTGTGAAGTGA

Upstream 100 bases:

>100_bases
CGGCGAATTTGACGCGTACATGACGTCTAAGTGATCCTCGCGCGTCGCCCGGGGCTCGCTCCGGCGCCCCAGCCATCACT
GAATACGCAAGGGACACCAC

Downstream 100 bases:

>100_bases
GGAGACAAGCAATGCCGATCAAACCCATTGTGTGTGGCCTGCTGCTGATGGTTCTGTTGAGCGCCTGCGGGCAGACCAGC
AGCCCGCAGGAAGCGCCAAA

Product: di-tripeptide transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 502; Mature: 501

Protein sequence:

>502_residues
MSVDATAPISASTPPPPEFPTLLGHPRPLWMLFMTEFWERFAFYGIRWALTLYIVTEFYQGSGVGEAPANRLYGAYLALV
YASALFGGFVADRLIGYQRSLLIGAVVMSAGLFLIVVPNDQVFKIGLATIIAGNGLFKPNVSTMVGQLYPLNDPRRDSGF
TIFYMGINAGGFVAPILTGLLADKLFGTEAMPAYKYVFIASGIGMLISLVWFWLGRRQLGPVGLPPVGGEGMGRTLVVLV
GTVVAVPVAYGLLLIGASILGWILTILFLALCGLILFEGIREGKVQRDRAVAMLIVFVFNVMFFMFFEQAGSSFNFLAQN
IVERDLGGWMFPVGWFQSVNTLAILVLGPVFVWLWVALKSANPSIPRKFGLGLIFNGLAFALLMYALSALVDDAGKIPFW
TLFMVYVIQTVGELCLSPIGLSMTTKLAPAKVVGLAMGGWFLSTAIGNNLSGIFASAISGETGMTVASALKGYTFGFWSL
IAAGVLLLLIAPLVNKLMHGVK

Sequences:

>Translated_502_residues
MSVDATAPISASTPPPPEFPTLLGHPRPLWMLFMTEFWERFAFYGIRWALTLYIVTEFYQGSGVGEAPANRLYGAYLALV
YASALFGGFVADRLIGYQRSLLIGAVVMSAGLFLIVVPNDQVFKIGLATIIAGNGLFKPNVSTMVGQLYPLNDPRRDSGF
TIFYMGINAGGFVAPILTGLLADKLFGTEAMPAYKYVFIASGIGMLISLVWFWLGRRQLGPVGLPPVGGEGMGRTLVVLV
GTVVAVPVAYGLLLIGASILGWILTILFLALCGLILFEGIREGKVQRDRAVAMLIVFVFNVMFFMFFEQAGSSFNFLAQN
IVERDLGGWMFPVGWFQSVNTLAILVLGPVFVWLWVALKSANPSIPRKFGLGLIFNGLAFALLMYALSALVDDAGKIPFW
TLFMVYVIQTVGELCLSPIGLSMTTKLAPAKVVGLAMGGWFLSTAIGNNLSGIFASAISGETGMTVASALKGYTFGFWSL
IAAGVLLLLIAPLVNKLMHGVK
>Mature_501_residues
SVDATAPISASTPPPPEFPTLLGHPRPLWMLFMTEFWERFAFYGIRWALTLYIVTEFYQGSGVGEAPANRLYGAYLALVY
ASALFGGFVADRLIGYQRSLLIGAVVMSAGLFLIVVPNDQVFKIGLATIIAGNGLFKPNVSTMVGQLYPLNDPRRDSGFT
IFYMGINAGGFVAPILTGLLADKLFGTEAMPAYKYVFIASGIGMLISLVWFWLGRRQLGPVGLPPVGGEGMGRTLVVLVG
TVVAVPVAYGLLLIGASILGWILTILFLALCGLILFEGIREGKVQRDRAVAMLIVFVFNVMFFMFFEQAGSSFNFLAQNI
VERDLGGWMFPVGWFQSVNTLAILVLGPVFVWLWVALKSANPSIPRKFGLGLIFNGLAFALLMYALSALVDDAGKIPFWT
LFMVYVIQTVGELCLSPIGLSMTTKLAPAKVVGLAMGGWFLSTAIGNNLSGIFASAISGETGMTVASALKGYTFGFWSLI
AAGVLLLLIAPLVNKLMHGVK

Specific function: Unknown

COG id: COG3104

COG function: function code E; Dipeptide/tripeptide permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PTR2/POT transporter (TC 2.A.17) family [H]

Homologues:

Organism=Homo sapiens, GI4827008, Length=402, Percent_Identity=24.1293532338308, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI226371746, Length=376, Percent_Identity=25.2659574468085, Blast_Score=73, Evalue=8e-13,
Organism=Homo sapiens, GI226371748, Length=366, Percent_Identity=24.5901639344262, Blast_Score=67, Evalue=5e-11,
Organism=Escherichia coli, GI1789911, Length=488, Percent_Identity=30.5327868852459, Blast_Score=209, Evalue=3e-55,
Organism=Escherichia coli, GI1787922, Length=500, Percent_Identity=28.4, Blast_Score=192, Evalue=4e-50,
Organism=Escherichia coli, GI1790572, Length=477, Percent_Identity=29.3501048218029, Blast_Score=167, Evalue=1e-42,
Organism=Escherichia coli, GI1786927, Length=456, Percent_Identity=29.6052631578947, Blast_Score=166, Evalue=3e-42,
Organism=Caenorhabditis elegans, GI71987453, Length=376, Percent_Identity=23.936170212766, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI28571098, Length=480, Percent_Identity=23.75, Blast_Score=95, Evalue=1e-19,
Organism=Drosophila melanogaster, GI28571102, Length=373, Percent_Identity=25.7372654155496, Blast_Score=94, Evalue=3e-19,
Organism=Drosophila melanogaster, GI28571100, Length=373, Percent_Identity=25.7372654155496, Blast_Score=94, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24639585, Length=359, Percent_Identity=25.3481894150418, Blast_Score=80, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24639583, Length=355, Percent_Identity=25.6338028169014, Blast_Score=80, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24639581, Length=343, Percent_Identity=25.3644314868805, Blast_Score=77, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR016196
- InterPro:   IPR000109
- InterPro:   IPR005279
- InterPro:   IPR018456 [H]

Pfam domain/function: PF00854 PTR2 [H]

EC number: NA

Molecular weight: Translated: 54090; Mature: 53959

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: PS01023 PTR2_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVDATAPISASTPPPPEFPTLLGHPRPLWMLFMTEFWERFAFYGIRWALTLYIVTEFYQ
CCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GSGVGEAPANRLYGAYLALVYASALFGGFVADRLIGYQRSLLIGAVVMSAGLFLIVVPND
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCC
QVFKIGLATIIAGNGLFKPNVSTMVGQLYPLNDPRRDSGFTIFYMGINAGGFVAPILTGL
CEEEHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHH
LADKLFGTEAMPAYKYVFIASGIGMLISLVWFWLGRRQLGPVGLPPVGGEGMGRTLVVLV
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH
GTVVAVPVAYGLLLIGASILGWILTILFLALCGLILFEGIREGKVQRDRAVAMLIVFVFN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
VMFFMFFEQAGSSFNFLAQNIVERDLGGWMFPVGWFQSVNTLAILVLGPVFVWLWVALKS
HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
ANPSIPRKFGLGLIFNGLAFALLMYALSALVDDAGKIPFWTLFMVYVIQTVGELCLSPIG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC
LSMTTKLAPAKVVGLAMGGWFLSTAIGNNLSGIFASAISGETGMTVASALKGYTFGFWSL
CCHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHH
IAAGVLLLLIAPLVNKLMHGVK
HHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SVDATAPISASTPPPPEFPTLLGHPRPLWMLFMTEFWERFAFYGIRWALTLYIVTEFYQ
CCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GSGVGEAPANRLYGAYLALVYASALFGGFVADRLIGYQRSLLIGAVVMSAGLFLIVVPND
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCC
QVFKIGLATIIAGNGLFKPNVSTMVGQLYPLNDPRRDSGFTIFYMGINAGGFVAPILTGL
CEEEHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHH
LADKLFGTEAMPAYKYVFIASGIGMLISLVWFWLGRRQLGPVGLPPVGGEGMGRTLVVLV
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH
GTVVAVPVAYGLLLIGASILGWILTILFLALCGLILFEGIREGKVQRDRAVAMLIVFVFN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
VMFFMFFEQAGSSFNFLAQNIVERDLGGWMFPVGWFQSVNTLAILVLGPVFVWLWVALKS
HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
ANPSIPRKFGLGLIFNGLAFALLMYALSALVDDAGKIPFWTLFMVYVIQTVGELCLSPIG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC
LSMTTKLAPAKVVGLAMGGWFLSTAIGNNLSGIFASAISGETGMTVASALKGYTFGFWSL
CCHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHH
IAAGVLLLLIAPLVNKLMHGVK
HHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]