Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
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Accession | NC_007705 |
Length | 4,940,217 |
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The map label for this gene is opgH [H]
Identifier: 84625439
GI number: 84625439
Start: 4275960
End: 4277897
Strand: Reverse
Name: opgH [H]
Synonym: XOO_3782
Alternate gene names: 84625439
Gene position: 4277897-4275960 (Counterclockwise)
Preceding gene: 84625442
Following gene: 84625438
Centisome position: 86.59
GC content: 66.41
Gene sequence:
>1938_bases ATGGATGGCACCGTGACTCTTTCCTCGACACCAACTGCGATCCCCCCCGTTTCTGCCCTCGATGCCGGTAAGCCCACGCT GCCGCCGGAAGCGCCATTGGCAATGCCAGAGCAGAACTTGCGCGAAGGTAGCCTGCAAGTGCGCCACCAGCGCACCTCGC CTCCCGGCATCGGCATGCGGCGTTTCTATCTGATCGGCGGCACCTTCGCCGCCACTGCCGTGGCCGTGTGGGTGATGCTC AGCGTGCTGTGGCCCGACGGCATCAGCGTGCTGGAAGGCTGCCTGCTTTGTCTGTTTACCCTGCTGTTCGCCTGGATCGC GATGTCCTTCGCCAGCGCGGTGGCCGGCTTCGTCACCGTGGTGGCGCGTGCCGGGCGCAAGCTCGGCATCGACCCGGAAG AGCCACTGCCCACGCTGCGCTCGCGCACCGCGTTGCTGATGCCCACCTATAACGAAGACCCGCGCCGGTTGCTGGCCGGC CTGCAGGCGATCTACGAATCGGTGGCCGAAACCGGCCAGCTGGAGCACTTCGACTTCTTCGTGCTCAGCGACACCACCCG CGAGCACATCGGCCGCGCCGAAGAACTGGTGTACAGCGAACTGTGCGACCGAGTCGATGGTCACGGCCGCATTTTCTATC GCCGCCGCGCCGACAACGCCGCGCGCAAGGCCGGCAACGTGGCCGATTGGGTGCGCCGCTTCGGTGGTCGCTATCCGCAG ATGCTGATTCTGGACGCCGACAGCGTCATGACCGGCGACACCATCGTGCGGCTGGTCGCCGGCATGGAAAACAACCCCGA CGTCGGCCTGATCCAGACCCTGCCGGCAGTGGTCAATGGGCAGACCCTGTTCGCCCGCATGCAACAGTTCGGCGGCCGCG TGTATGGCCCGATCATCGCCTTCGGTGTGGCCTGGTGGCATGGTGCCGAGAGCAACTACTGGGGCCACAACGCCATCATC CGCACCCACGCCTTCGCCGATCACGCCGGCCTGCCGTCGCTGCGCGGGCGCAAGCCGTTCGGCGGGCATGTGCTCAGCCA CGACTTCGTGGAAGCCGCGCTGATGCGGCGCGGCGGCTGGGCCATGCACATGGTGCCGTACCTGCAGGGCAGCTACGAAG AAGGCCCGCCCACGCTCACCGACCTGCTGATCCGCGACCGCCGCTGGTGCCAGGGCAACCTGCAGCACGCCAAGGTGGTG AGCGCCAAGGGCCTGCACTGGATCAGCCGCATGCACATGCTGATCGGCATCGGGCATTACTTCACCGCACCAATGTGGGG CCTGCTGATGCTGATCGGCATCGGCATTCCGCTGGCCGGCGTCGGTATCGATCTGGCCGGCGACCTGCCGTTCTCGCCTG CCCGTTACTGGCACGGCAGCAGCCAGGGCAATGCGATCTGGATCTTCATCTGCACCATGTTCGTGTTGCTGGCGCCCAAG CTGCTCGGTTACATCGCGCTGCTGCTCAACCCGCGCGAACTGCGCGCCTGCGGCGGTGCCTTCCGCGCTGCGGTGAGCAT CCTGCTGGAAACCGTGCTGGCGGCATTGATGGCGCCGGTGGTGATGTACCTGCAGTCGCGCGGTGTATTCGAAGTGTTGG CCGGTAAGGATTCGGGCTGGGATGCGCAAGTCCGCGACGACGGCAAGCTGTCGTGGCCGGCGCTGTTGCGCAGCTACGGT GGCCTGACTGTGTTCGGTCTGTTCATGGGGGCAGTGGCCTATGCGGTTTCGCCGGCGCTGGCCGCGTGGATGGGGCCGGT GATCGTCGGCATGGCGTTGTCGATCCCGGTGGTGGCGCTGACCTCGCTGCGTCGCACCGGCATGGCGCTACGCCGCGCCG GCATTTTTTGCATTCCCGAAGAACTCGATCCGCCCAAGGTGTTGGTGCGCGCGTCTGAGCTACGCCGCGCCGCCGTGCTG GAACCGTCGCTGATCTGA
Upstream 100 bases:
>100_bases TCGCCCGCGTCACCGCGTGCCAGGCAACATCGCACTGTATGGCGGGGATGGACCTCCCGTTTCAGCCCGCACTGTCGCCC TCGCGCGACTGGCAGCCCTG
Downstream 100 bases:
>100_bases GTTCGCACCGGTGCTGGTCCTTCGGTGCCGGTGACGTTGTGCGGGGGCTGCCAGTTGCAGCTGCAGTTGCATGCACGCAT CGCAGTCTGCGCCGGCTGAT
Product: glucosyltransferase MdoH
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 645; Mature: 645
Protein sequence:
>645_residues MDGTVTLSSTPTAIPPVSALDAGKPTLPPEAPLAMPEQNLREGSLQVRHQRTSPPGIGMRRFYLIGGTFAATAVAVWVML SVLWPDGISVLEGCLLCLFTLLFAWIAMSFASAVAGFVTVVARAGRKLGIDPEEPLPTLRSRTALLMPTYNEDPRRLLAG LQAIYESVAETGQLEHFDFFVLSDTTREHIGRAEELVYSELCDRVDGHGRIFYRRRADNAARKAGNVADWVRRFGGRYPQ MLILDADSVMTGDTIVRLVAGMENNPDVGLIQTLPAVVNGQTLFARMQQFGGRVYGPIIAFGVAWWHGAESNYWGHNAII RTHAFADHAGLPSLRGRKPFGGHVLSHDFVEAALMRRGGWAMHMVPYLQGSYEEGPPTLTDLLIRDRRWCQGNLQHAKVV SAKGLHWISRMHMLIGIGHYFTAPMWGLLMLIGIGIPLAGVGIDLAGDLPFSPARYWHGSSQGNAIWIFICTMFVLLAPK LLGYIALLLNPRELRACGGAFRAAVSILLETVLAALMAPVVMYLQSRGVFEVLAGKDSGWDAQVRDDGKLSWPALLRSYG GLTVFGLFMGAVAYAVSPALAAWMGPVIVGMALSIPVVALTSLRRTGMALRRAGIFCIPEELDPPKVLVRASELRRAAVL EPSLI
Sequences:
>Translated_645_residues MDGTVTLSSTPTAIPPVSALDAGKPTLPPEAPLAMPEQNLREGSLQVRHQRTSPPGIGMRRFYLIGGTFAATAVAVWVML SVLWPDGISVLEGCLLCLFTLLFAWIAMSFASAVAGFVTVVARAGRKLGIDPEEPLPTLRSRTALLMPTYNEDPRRLLAG LQAIYESVAETGQLEHFDFFVLSDTTREHIGRAEELVYSELCDRVDGHGRIFYRRRADNAARKAGNVADWVRRFGGRYPQ MLILDADSVMTGDTIVRLVAGMENNPDVGLIQTLPAVVNGQTLFARMQQFGGRVYGPIIAFGVAWWHGAESNYWGHNAII RTHAFADHAGLPSLRGRKPFGGHVLSHDFVEAALMRRGGWAMHMVPYLQGSYEEGPPTLTDLLIRDRRWCQGNLQHAKVV SAKGLHWISRMHMLIGIGHYFTAPMWGLLMLIGIGIPLAGVGIDLAGDLPFSPARYWHGSSQGNAIWIFICTMFVLLAPK LLGYIALLLNPRELRACGGAFRAAVSILLETVLAALMAPVVMYLQSRGVFEVLAGKDSGWDAQVRDDGKLSWPALLRSYG GLTVFGLFMGAVAYAVSPALAAWMGPVIVGMALSIPVVALTSLRRTGMALRRAGIFCIPEELDPPKVLVRASELRRAAVL EPSLI >Mature_645_residues MDGTVTLSSTPTAIPPVSALDAGKPTLPPEAPLAMPEQNLREGSLQVRHQRTSPPGIGMRRFYLIGGTFAATAVAVWVML SVLWPDGISVLEGCLLCLFTLLFAWIAMSFASAVAGFVTVVARAGRKLGIDPEEPLPTLRSRTALLMPTYNEDPRRLLAG LQAIYESVAETGQLEHFDFFVLSDTTREHIGRAEELVYSELCDRVDGHGRIFYRRRADNAARKAGNVADWVRRFGGRYPQ MLILDADSVMTGDTIVRLVAGMENNPDVGLIQTLPAVVNGQTLFARMQQFGGRVYGPIIAFGVAWWHGAESNYWGHNAII RTHAFADHAGLPSLRGRKPFGGHVLSHDFVEAALMRRGGWAMHMVPYLQGSYEEGPPTLTDLLIRDRRWCQGNLQHAKVV SAKGLHWISRMHMLIGIGHYFTAPMWGLLMLIGIGIPLAGVGIDLAGDLPFSPARYWHGSSQGNAIWIFICTMFVLLAPK LLGYIALLLNPRELRACGGAFRAAVSILLETVLAALMAPVVMYLQSRGVFEVLAGKDSGWDAQVRDDGKLSWPALLRSYG GLTVFGLFMGAVAYAVSPALAAWMGPVIVGMALSIPVVALTSLRRTGMALRRAGIFCIPEELDPPKVLVRASELRRAAVL EPSLI
Specific function: Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs) [H]
COG id: COG2943
COG function: function code M; Membrane glycosyltransferase
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 2 family. OpgH subfamily [H]
Homologues:
Organism=Escherichia coli, GI1787287, Length=618, Percent_Identity=38.3495145631068, Blast_Score=385, Evalue=1e-108,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: 2.4.1.- [C]
Molecular weight: Translated: 70308; Mature: 70308
Theoretical pI: Translated: 8.79; Mature: 8.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDGTVTLSSTPTAIPPVSALDAGKPTLPPEAPLAMPEQNLREGSLQVRHQRTSPPGIGMR CCCCEEECCCCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHCCCCCEEEECCCCCCCCCCE RFYLIGGTFAATAVAVWVMLSVLWPDGISVLEGCLLCLFTLLFAWIAMSFASAVAGFVTV EEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VARAGRKLGIDPEEPLPTLRSRTALLMPTYNEDPRRLLAGLQAIYESVAETGQLEHFDFF HHHCCCCCCCCCCCCCCHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE VLSDTTREHIGRAEELVYSELCDRVDGHGRIFYRRRADNAARKAGNVADWVRRFGGRYPQ EECCCHHHHHCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHCCCHHHHHHHHCCCCCE MLILDADSVMTGDTIVRLVAGMENNPDVGLIQTLPAVVNGQTLFARMQQFGGRVYGPIIA EEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHH FGVAWWHGAESNYWGHNAIIRTHAFADHAGLPSLRGRKPFGGHVLSHDFVEAALMRRGGW HHHHHHCCCCCCCCCCCCEEEEECHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC AMHMVPYLQGSYEEGPPTLTDLLIRDRRWCQGNLQHAKVVSAKGLHWISRMHMLIGIGHY CEEHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHH FTAPMWGLLMLIGIGIPLAGVGIDLAGDLPFSPARYWHGSSQGNAIWIFICTMFVLLAPK HHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHH LLGYIALLLNPRELRACGGAFRAAVSILLETVLAALMAPVVMYLQSRGVFEVLAGKDSGW HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC DAQVRDDGKLSWPALLRSYGGLTVFGLFMGAVAYAVSPALAAWMGPVIVGMALSIPVVAL CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TSLRRTGMALRRAGIFCIPEELDPPKVLVRASELRRAAVLEPSLI HHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MDGTVTLSSTPTAIPPVSALDAGKPTLPPEAPLAMPEQNLREGSLQVRHQRTSPPGIGMR CCCCEEECCCCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHCCCCCEEEECCCCCCCCCCE RFYLIGGTFAATAVAVWVMLSVLWPDGISVLEGCLLCLFTLLFAWIAMSFASAVAGFVTV EEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VARAGRKLGIDPEEPLPTLRSRTALLMPTYNEDPRRLLAGLQAIYESVAETGQLEHFDFF HHHCCCCCCCCCCCCCCHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE VLSDTTREHIGRAEELVYSELCDRVDGHGRIFYRRRADNAARKAGNVADWVRRFGGRYPQ EECCCHHHHHCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHCCCHHHHHHHHCCCCCE MLILDADSVMTGDTIVRLVAGMENNPDVGLIQTLPAVVNGQTLFARMQQFGGRVYGPIIA EEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHH FGVAWWHGAESNYWGHNAIIRTHAFADHAGLPSLRGRKPFGGHVLSHDFVEAALMRRGGW HHHHHHCCCCCCCCCCCCEEEEECHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC AMHMVPYLQGSYEEGPPTLTDLLIRDRRWCQGNLQHAKVVSAKGLHWISRMHMLIGIGHY CEEHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHH FTAPMWGLLMLIGIGIPLAGVGIDLAGDLPFSPARYWHGSSQGNAIWIFICTMFVLLAPK HHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHH LLGYIALLLNPRELRACGGAFRAAVSILLETVLAALMAPVVMYLQSRGVFEVLAGKDSGW HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC DAQVRDDGKLSWPALLRSYGGLTVFGLFMGAVAYAVSPALAAWMGPVIVGMALSIPVVAL CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TSLRRTGMALRRAGIFCIPEELDPPKVLVRASELRRAAVLEPSLI HHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 12024217 [H]