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The map label for this gene is pafC [H]

Identifier: 84625433

GI number: 84625433

Start: 4269495

End: 4270460

Strand: Reverse

Name: pafC [H]

Synonym: XOO_3776

Alternate gene names: 84625433

Gene position: 4270460-4269495 (Counterclockwise)

Preceding gene: 84625435

Following gene: 84625431

Centisome position: 86.44

GC content: 63.25

Gene sequence:

>966_bases
ATGGACCGCTATGAACGCATCAACTCCCTGCATCGTTTGCTCAAATCGGCACGCTACCCGGTCACGGTGGCGCGGCTGCA
GGATGAGCTGAGCTGTTCCCGCGCAACCGTCTACCGCGATCTGGCGTTTCTGCGCGATGCACTGATGGCACCGGTGGAAG
GTGATGGCGAATCGGGCTTTCGCTATCTAACCGGCGAAAGCGATCGCTTCGAATTGCCTGGGCTGTGGTTGAGCTCGGAA
GAATTGCACGCACTGCTGGCTTCGCAACAATTGCTCGCGCGCACCGGCGGCGGGGTGTTGTCCTCGATGCTGGCACCGCT
GCAGCAACGCATCGAAGTGCTGCTGGCTGCGCAAGCCGGTGTCTCGCAATGGCCGGTGGATCGGGTGCGGGTCATTCCGC
ACCGCGGCCGCAAGCTGGACGAAGCCAGCTTCCGCACCGTGGCCTCCGGCGTGCTGGAGCGCAAGCAGCTGAGCTTCGAT
TACCGTGCGCGTTCTACCGATGAATCGACCAAGCGCACCGTGTCGCCACAGCGCATCACCCATTACCGCGACAACTGGTA
TCTGGATGCCTGGGATCACGGCCGCGACGGCGTGCGCAGCTTTGCGGTGGACCGCATCAACCATGCGCGCCTGCTCGATG
CCGCGCCGCGCGATGTGCCCGACAGCGAATTGGACGAGCAGCTTGCCGCCACCTACGGCATTTTCTCCGGGGCGCCCAAG
GGCTGGGCGACCATCGTGTTCAGCGCCAAGGCCGCGCGCTGGGTGGCCGACGAACATTGGCATTCCAAGCAGCAGGGGCG
GTTTCTGCCCGATGGCCGTTACGAGCTCAAGCTGCCGTATAGCAACTCGCGGGAACTGCTGATGGACGTGCTGCACTACG
GCTCGGATGCGGAGATCGTCGAACCCATGTCGTTGCGCGAGCAGGCCAAGACGTTGTTGTCGCTGGCGTTGAGCAATTAC
GACTGA

Upstream 100 bases:

>100_bases
TGCACCTGGGTCCGACGTAATCTGAGCGCTCGCAGCTATCTGCCTATCGCCAGACGGCGATGCTCACCCCGCCGCGCAAA
GACTCGGACATAATCGACGC

Downstream 100 bases:

>100_bases
GCCGAGCCGGCAGTGACGCGTTGCGCCGCGTTGCAATCGCGGCGCGTGCAAGCATGACGATCGACAACGCGCCACTGATC
CGGCGCCTGGCGAATGCGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MDRYERINSLHRLLKSARYPVTVARLQDELSCSRATVYRDLAFLRDALMAPVEGDGESGFRYLTGESDRFELPGLWLSSE
ELHALLASQQLLARTGGGVLSSMLAPLQQRIEVLLAAQAGVSQWPVDRVRVIPHRGRKLDEASFRTVASGVLERKQLSFD
YRARSTDESTKRTVSPQRITHYRDNWYLDAWDHGRDGVRSFAVDRINHARLLDAAPRDVPDSELDEQLAATYGIFSGAPK
GWATIVFSAKAARWVADEHWHSKQQGRFLPDGRYELKLPYSNSRELLMDVLHYGSDAEIVEPMSLREQAKTLLSLALSNY
D

Sequences:

>Translated_321_residues
MDRYERINSLHRLLKSARYPVTVARLQDELSCSRATVYRDLAFLRDALMAPVEGDGESGFRYLTGESDRFELPGLWLSSE
ELHALLASQQLLARTGGGVLSSMLAPLQQRIEVLLAAQAGVSQWPVDRVRVIPHRGRKLDEASFRTVASGVLERKQLSFD
YRARSTDESTKRTVSPQRITHYRDNWYLDAWDHGRDGVRSFAVDRINHARLLDAAPRDVPDSELDEQLAATYGIFSGAPK
GWATIVFSAKAARWVADEHWHSKQQGRFLPDGRYELKLPYSNSRELLMDVLHYGSDAEIVEPMSLREQAKTLLSLALSNY
D
>Mature_321_residues
MDRYERINSLHRLLKSARYPVTVARLQDELSCSRATVYRDLAFLRDALMAPVEGDGESGFRYLTGESDRFELPGLWLSSE
ELHALLASQQLLARTGGGVLSSMLAPLQQRIEVLLAAQAGVSQWPVDRVRVIPHRGRKLDEASFRTVASGVLERKQLSFD
YRARSTDESTKRTVSPQRITHYRDNWYLDAWDHGRDGVRSFAVDRINHARLLDAAPRDVPDSELDEQLAATYGIFSGAPK
GWATIVFSAKAARWVADEHWHSKQQGRFLPDGRYELKLPYSNSRELLMDVLHYGSDAEIVEPMSLREQAKTLLSLALSNY
D

Specific function: Does not seem to be involved in pupylation or substrate degradation [H]

COG id: COG2378

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pafC family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36373; Mature: 36373

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRYERINSLHRLLKSARYPVTVARLQDELSCSRATVYRDLAFLRDALMAPVEGDGESGF
CCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
RYLTGESDRFELPGLWLSSEELHALLASQQLLARTGGGVLSSMLAPLQQRIEVLLAAQAG
EEECCCCCCEECCCCEECHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC
VSQWPVDRVRVIPHRGRKLDEASFRTVASGVLERKQLSFDYRARSTDESTKRTVSPQRIT
CCCCCHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHCCCCCHHHHHCCCHHHHH
HYRDNWYLDAWDHGRDGVRSFAVDRINHARLLDAAPRDVPDSELDEQLAATYGIFSGAPK
HHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCC
GWATIVFSAKAARWVADEHWHSKQQGRFLPDGRYELKLPYSNSRELLMDVLHYGSDAEIV
CCEEEEEECHHHHHHHHHHHCCHHCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCHH
EPMSLREQAKTLLSLALSNYD
CHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDRYERINSLHRLLKSARYPVTVARLQDELSCSRATVYRDLAFLRDALMAPVEGDGESGF
CCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
RYLTGESDRFELPGLWLSSEELHALLASQQLLARTGGGVLSSMLAPLQQRIEVLLAAQAG
EEECCCCCCEECCCCEECHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC
VSQWPVDRVRVIPHRGRKLDEASFRTVASGVLERKQLSFDYRARSTDESTKRTVSPQRIT
CCCCCHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHCCCCCHHHHHCCCHHHHH
HYRDNWYLDAWDHGRDGVRSFAVDRINHARLLDAAPRDVPDSELDEQLAATYGIFSGAPK
HHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCC
GWATIVFSAKAARWVADEHWHSKQQGRFLPDGRYELKLPYSNSRELLMDVLHYGSDAEIV
CCEEEEEECHHHHHHHHHHHCCHHCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCHH
EPMSLREQAKTLLSLALSNYD
CHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11234002 [H]