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The map label for this gene is bphB [H]

Identifier: 84625371

GI number: 84625371

Start: 4198153

End: 4199964

Strand: Reverse

Name: bphB [H]

Synonym: XOO_3714

Alternate gene names: 84625371

Gene position: 4199964-4198153 (Counterclockwise)

Preceding gene: 84625372

Following gene: 84625370

Centisome position: 85.02

GC content: 64.02

Gene sequence:

>1812_bases
ATGCAAACAACGGTCCAAGCAGACAAATGGGATCGCTGGCGCCTGCCTCTTTTGGCGGTTGCCGTCTTCCTGATTGTGGT
GGTGCCATCGTTGCTGCTGCAGCAGTTGGCACGCAATGCCAACCGGGCTGCGGTGTGGGTCTCGCACAGCCAGCAAGTGC
AGGGGACCGCGCAGCGCCTGGAAGCGGCGATGCGCGATACCGAATCGGCGGCGTTGATGCGCGCGCACGGTGTGGAGCGC
GAGGCGCTGCATGAGCGCATGCGCCGCGGGCGGAGCGAGTCGCTGGCTGCAGTGCAGCGGTTGATCGTATTGACCAGGGA
CAACCCCGCGCAGTTGGTGCGCATCGGACGCATCCAAAGCACCATCGAACGGCGTTTGCTGCTGGCCGAGCGGATTGCGG
TGACCACTTCGCCGGAGCAGATCCGCTTCCTGATCAACGACATGACCGTGAACAACCCGATCCGTGTGCTGATGGACGAC
CTGCAAAGCGCCGAAGGCCGTTTGTTGGCGCTGCGCAATGCGCGCGCCGAGACCGAACGCATGCATTACGCGCTGCTGGG
CTGGGCGGCGTTGGCGGTGCAGCTGCTGTTGCTCGGCACGGTGACTTGGCTGATGCAACGGCAGATCCGGCGCCGATTGG
TGGCCGAGCAGGAATACCTGCGCGCCAACGGCCGCGCCAGCTCGGTGCTGCAGACCGTACGTGAGCCCATCGTGCTGCTG
GATGCCGACCAACGCATCGTGTTGCACAACCCCGCCTTCGCCGAGCTGTATGGTCTGGAAGAGCGCGGCAACGAATTGAT
GGCGCTGGAGGATGTGGGCGAAGGCGTGTGGCGCGATGCCCAGATCCATCAGCGGCTGGCCGACGTGCTGCTGCGTGGCC
GTGAACTGTGGGATTACGAACACGAGCAACGCGGCGCCGATGGCGTGCTACGCACCATGTTGATCAACGCGCGCCGCATG
CCACTGCCCGATACCACCGACGAAGACGTGGTGCTGATGACGGTGAGCGACATCAGCCTGCAAAAGACCGCGCAGATGCG
CATCCAGGAGCTCAACCGGCAGATGGAAGGCAAGGTGGAGCAGGTGTCTGAGGTCAACCGCGAGTTGGAAGCCTTCAGCT
ATTCGGTCTCGCACGATCTGCGCGCGCCGTTGCGGCATGTGGCCGGATTCTCCGACAAGCTGGCCCGCCATCTGGGCGAT
GCGGCCGACGAGAAATCGCGCCACTACATGGAAGTGATCAGCAGCTCGGCGCGGCGCATGGCCTCGCTGATCGACGACCT
GCTGGTGTATTCGCGCCTGGGCCGCGGCGCGCTGCGCCTGCAGTCGGTGGACATGCAATCGCTGGTGGCCGAAACGCGCG
CGATTCTGGATTCCAACGTGCAGAGCGAAAACACCGGCCATCGCGTGGAGTGGCATATCGCGCCGCTACCGGTGCTGGTG
GCCGACGAAAACATGATGCGCCAGCTGTGGATGAACCTGCTCGGCAATGCCGTCAAGTACAGCGCCAAGCGCGAGGTGGC
CAAGGTCGAGGTCACCTACACGCCGATGGCCGACGGCGGCCATCAGTTCAGCGTGCGCGACAACGGCGCCGGTTTCGATA
TGGAATACAGCGCCAAATTGTTCGGCGTTTTCCAACGGTTGCACAAGGCCAGCGAATACGCTGGTACCGGCATCGGGCTG
GCCAGCGTGCGGCGCGTGTTGACGCGCCACGGCGGCCGGGTCTGGGCCGAAGGCCTCGTCGACGAAGGCGCCACGTTTTA
TTTCGTGTTGCCCCCTGCGCTTGAAGCGCCCAACCAAGAGTTCACTGTATGA

Upstream 100 bases:

>100_bases
TCAACAGGACTTGTCTGAATCATTAATTTGGCAATGTGCGTGATCGGAGACAATGCCGACGTGTGCTTGGCCCCTGCAGC
GAGCGGAAAGCGATCTAGCA

Downstream 100 bases:

>100_bases
CCGCCATCCGTACCATTCTTTTGGCAGAAGACAGCCTGGCCGATGCGGAAATGGCGGTCGACGCCTTGCGCGAGGCCCGT
CTGGCCAATCCCATCGTGCA

Product: two-component system sensor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 603; Mature: 603

Protein sequence:

>603_residues
MQTTVQADKWDRWRLPLLAVAVFLIVVVPSLLLQQLARNANRAAVWVSHSQQVQGTAQRLEAAMRDTESAALMRAHGVER
EALHERMRRGRSESLAAVQRLIVLTRDNPAQLVRIGRIQSTIERRLLLAERIAVTTSPEQIRFLINDMTVNNPIRVLMDD
LQSAEGRLLALRNARAETERMHYALLGWAALAVQLLLLGTVTWLMQRQIRRRLVAEQEYLRANGRASSVLQTVREPIVLL
DADQRIVLHNPAFAELYGLEERGNELMALEDVGEGVWRDAQIHQRLADVLLRGRELWDYEHEQRGADGVLRTMLINARRM
PLPDTTDEDVVLMTVSDISLQKTAQMRIQELNRQMEGKVEQVSEVNRELEAFSYSVSHDLRAPLRHVAGFSDKLARHLGD
AADEKSRHYMEVISSSARRMASLIDDLLVYSRLGRGALRLQSVDMQSLVAETRAILDSNVQSENTGHRVEWHIAPLPVLV
ADENMMRQLWMNLLGNAVKYSAKREVAKVEVTYTPMADGGHQFSVRDNGAGFDMEYSAKLFGVFQRLHKASEYAGTGIGL
ASVRRVLTRHGGRVWAEGLVDEGATFYFVLPPALEAPNQEFTV

Sequences:

>Translated_603_residues
MQTTVQADKWDRWRLPLLAVAVFLIVVVPSLLLQQLARNANRAAVWVSHSQQVQGTAQRLEAAMRDTESAALMRAHGVER
EALHERMRRGRSESLAAVQRLIVLTRDNPAQLVRIGRIQSTIERRLLLAERIAVTTSPEQIRFLINDMTVNNPIRVLMDD
LQSAEGRLLALRNARAETERMHYALLGWAALAVQLLLLGTVTWLMQRQIRRRLVAEQEYLRANGRASSVLQTVREPIVLL
DADQRIVLHNPAFAELYGLEERGNELMALEDVGEGVWRDAQIHQRLADVLLRGRELWDYEHEQRGADGVLRTMLINARRM
PLPDTTDEDVVLMTVSDISLQKTAQMRIQELNRQMEGKVEQVSEVNRELEAFSYSVSHDLRAPLRHVAGFSDKLARHLGD
AADEKSRHYMEVISSSARRMASLIDDLLVYSRLGRGALRLQSVDMQSLVAETRAILDSNVQSENTGHRVEWHIAPLPVLV
ADENMMRQLWMNLLGNAVKYSAKREVAKVEVTYTPMADGGHQFSVRDNGAGFDMEYSAKLFGVFQRLHKASEYAGTGIGL
ASVRRVLTRHGGRVWAEGLVDEGATFYFVLPPALEAPNQEFTV
>Mature_603_residues
MQTTVQADKWDRWRLPLLAVAVFLIVVVPSLLLQQLARNANRAAVWVSHSQQVQGTAQRLEAAMRDTESAALMRAHGVER
EALHERMRRGRSESLAAVQRLIVLTRDNPAQLVRIGRIQSTIERRLLLAERIAVTTSPEQIRFLINDMTVNNPIRVLMDD
LQSAEGRLLALRNARAETERMHYALLGWAALAVQLLLLGTVTWLMQRQIRRRLVAEQEYLRANGRASSVLQTVREPIVLL
DADQRIVLHNPAFAELYGLEERGNELMALEDVGEGVWRDAQIHQRLADVLLRGRELWDYEHEQRGADGVLRTMLINARRM
PLPDTTDEDVVLMTVSDISLQKTAQMRIQELNRQMEGKVEQVSEVNRELEAFSYSVSHDLRAPLRHVAGFSDKLARHLGD
AADEKSRHYMEVISSSARRMASLIDDLLVYSRLGRGALRLQSVDMQSLVAETRAILDSNVQSENTGHRVEWHIAPLPVLV
ADENMMRQLWMNLLGNAVKYSAKREVAKVEVTYTPMADGGHQFSVRDNGAGFDMEYSAKLFGVFQRLHKASEYAGTGIGL
ASVRRVLTRHGGRVWAEGLVDEGATFYFVLPPALEAPNQEFTV

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG4251

COG function: function code T; Bacteriophytochrome (light-regulated signal transduction histidine kinase)

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1788549, Length=373, Percent_Identity=24.6648793565684, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI48994928, Length=234, Percent_Identity=29.9145299145299, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI1786912, Length=249, Percent_Identity=27.710843373494, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1789149, Length=255, Percent_Identity=27.4509803921569, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1786600, Length=247, Percent_Identity=28.3400809716599, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI1790346, Length=207, Percent_Identity=31.4009661835749, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI87081816, Length=257, Percent_Identity=28.0155642023346, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI1790436, Length=220, Percent_Identity=24.5454545454545, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1788713, Length=425, Percent_Identity=20.7058823529412, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1790861, Length=256, Percent_Identity=26.171875, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 68138; Mature: 68138

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: PS50112 PAS ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTTVQADKWDRWRLPLLAVAVFLIVVVPSLLLQQLARNANRAAVWVSHSQQVQGTAQRL
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHH
EAAMRDTESAALMRAHGVEREALHERMRRGRSESLAAVQRLIVLTRDNPAQLVRIGRIQS
HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHEECCCHHHHHHHHHHHH
TIERRLLLAERIAVTTSPEQIRFLINDMTVNNPIRVLMDDLQSAEGRLLALRNARAETER
HHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEECCCHHHHHH
MHYALLGWAALAVQLLLLGTVTWLMQRQIRRRLVAEQEYLRANGRASSVLQTVREPIVLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEE
DADQRIVLHNPAFAELYGLEERGNELMALEDVGEGVWRDAQIHQRLADVLLRGRELWDYE
ECCCEEEEECCCHHHHHCCHHCCCCEEEHHHHCCCCCCHHHHHHHHHHHHHCCHHHCCCH
HEQRGADGVLRTMLINARRMPLPDTTDEDVVLMTVSDISLQKTAQMRIQELNRQMEGKVE
HHHCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
QVSEVNRELEAFSYSVSHDLRAPLRHVAGFSDKLARHLGDAADEKSRHYMEVISSSARRM
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
ASLIDDLLVYSRLGRGALRLQSVDMQSLVAETRAILDSNVQSENTGHRVEWHIAPLPVLV
HHHHHHHHHHHHHCCCHHEEHHCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCEEEE
ADENMMRQLWMNLLGNAVKYSAKREVAKVEVTYTPMADGGHQFSVRDNGAGFDMEYSAKL
CCHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEEECCCCCCCEEEEECCCCCCCCHHHHHH
FGVFQRLHKASEYAGTGIGLASVRRVLTRHGGRVWAEGLVDEGATFYFVLPPALEAPNQE
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEHHHHHCCCCEEEEEECCCCCCCCCC
FTV
CCC
>Mature Secondary Structure
MQTTVQADKWDRWRLPLLAVAVFLIVVVPSLLLQQLARNANRAAVWVSHSQQVQGTAQRL
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHH
EAAMRDTESAALMRAHGVEREALHERMRRGRSESLAAVQRLIVLTRDNPAQLVRIGRIQS
HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHEECCCHHHHHHHHHHHH
TIERRLLLAERIAVTTSPEQIRFLINDMTVNNPIRVLMDDLQSAEGRLLALRNARAETER
HHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEECCCHHHHHH
MHYALLGWAALAVQLLLLGTVTWLMQRQIRRRLVAEQEYLRANGRASSVLQTVREPIVLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEE
DADQRIVLHNPAFAELYGLEERGNELMALEDVGEGVWRDAQIHQRLADVLLRGRELWDYE
ECCCEEEEECCCHHHHHCCHHCCCCEEEHHHHCCCCCCHHHHHHHHHHHHHCCHHHCCCH
HEQRGADGVLRTMLINARRMPLPDTTDEDVVLMTVSDISLQKTAQMRIQELNRQMEGKVE
HHHCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
QVSEVNRELEAFSYSVSHDLRAPLRHVAGFSDKLARHLGDAADEKSRHYMEVISSSARRM
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
ASLIDDLLVYSRLGRGALRLQSVDMQSLVAETRAILDSNVQSENTGHRVEWHIAPLPVLV
HHHHHHHHHHHHHCCCHHEEHHCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCEEEE
ADENMMRQLWMNLLGNAVKYSAKREVAKVEVTYTPMADGGHQFSVRDNGAGFDMEYSAKL
CCHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEEECCCCCCCEEEEECCCCCCCCHHHHHH
FGVFQRLHKASEYAGTGIGLASVRRVLTRHGGRVWAEGLVDEGATFYFVLPPALEAPNQE
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEHHHHHCCCCEEEEEECCCCCCCCCC
FTV
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]